Beam-inside-beam contact: Mechanical simulations of slender medical instruments inside the human body.

Abstract:

BACKGROUND AND OBJECTIVE:This contribution presents a rapid computational framework to mechanically simulate the insertion of a slender medical instrument in a tubular structure such as an artery, the cochlea or another slender instrument. METHODS:Beams are employed to rapidly simulate the mechanical behaviour of the medical instrument and the tubular structure. However, the framework's novelty is its capability to handle the mechanical contact between an inner beam (representing the medical instrument) embedded in a hollow outer beam (representing the tubular structure). This "beam-inside-beam" contact framework, which forces two beams to remain embedded, is the first of its kind since existing contact frameworks for beams are "beam-to-beam" approaches, i.e. they repel beams from each other. Furthermore, we propose contact kinematics such that not only instruments and tubes with circular cross-sections can be considered, but also those with elliptical cross-sections. This provides flexibility for the optimization of patient-specific instruments. RESULTS:The results demonstrate that the framework's robustness is substantial, because only a few increments per simulation and a few iterations per increment are required, even though large deformations, large rotations and large curvature changes of both the instrument and tubular structure occur. The stability of the framework remains high even if the modulus of the inner tube is thousand times larger than that of the outer tube. A mesh convergence study furthermore exposes that a relatively small number of elements is required to accurately approach the reference solution. CONCLUSIONS:The framework's high simulation speed originates from the exploitation of the rigidity of the beams' cross-sections to quantify the exclusion between the inner and the hollow outer beam. This rigidity limits the accuracy of the framework at the same time, but this is unavoidable since simulation accuracy and simulation speed are two competing interests. Hence, the framework is particularly attractive if simulation speed is preferred over accuracy.

authors

Magliulo M,Lengiewicz J,Zilian A,Beex LAA

doi

10.1016/j.cmpb.2020.105527

subject

Has Abstract

pub_date

2020-11-01 00:00:00

pages

105527

eissn

0169-2607

issn

1872-7565

pii

S0169-2607(20)30105-X

journal_volume

196

pub_type

杂志文章
  • Mask_explorer: A tool for exploring brain masks in fMRI group analysis.

    abstract:BACKGROUND AND OBJECTIVE:Functional magnetic resonance imaging (fMRI) studies of the human brain are appearing in increasing numbers, providing interesting information about this complex system. Unique information about healthy and diseased brains is inferred using many types of experiments and analyses. In order to ob...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2016.07.015

    authors: Gajdoš M,Mikl M,Mareček R

    更新日期:2016-10-01 00:00:00

  • smcure: an R-package for estimating semiparametric mixture cure models.

    abstract::The mixture cure model is a special type of survival models and it assumes that the studied population is a mixture of susceptible individuals who may experience the event of interest, and cure/non-susceptible individuals who will never experience the event. For such data, standard survival models are usually not appr...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2012.08.013

    authors: Cai C,Zou Y,Peng Y,Zhang J

    更新日期:2012-12-01 00:00:00

  • Prognostic value of tumor volume for patients with advanced lung cancer treated with chemotherapy.

    abstract:BACKGROUND AND OBJECTIVE:We aim to develop a reference system utilizing computed tomography to calculate changes in tumor volume of lung cancer patients after chemotherapy to assist physicians in clinical treatment and evaluation. METHODS:Image processing techniques were used to analyze the computed tomography of lung...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2017.03.021

    authors: Kuo CJ,Ke BH,Wu NY,Kuo J,Hsu HH

    更新日期:2017-06-01 00:00:00

  • Deep-learning-based segmentation of the vocal tract and articulators in real-time magnetic resonance images of speech.

    abstract:BACKGROUND AND OBJECTIVE:Magnetic resonance (MR) imaging is increasingly used in studies of speech as it enables non-invasive visualisation of the vocal tract and articulators, thus providing information about their shape, size, motion and position. Extraction of this information for quantitative analysis is achieved u...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2020.105814

    authors: Ruthven M,Miquel ME,King AP

    更新日期:2021-01-01 00:00:00

  • Optimal dynamic empirical therapy in a health care facility: A Monte-Carlo look-ahead method.

    abstract:BACKGROUND AND OBJECTIVES:Empirical antimicrobial prescription strategies have been proposed to counteract the selection of resistant pathogenic strains. The respective merits of such strategies have been debated. Rather than comparing a finite number of policies, we take an optimization approach and propose a solution...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2020.105767

    authors: Houy N,Flaig J

    更新日期:2021-01-01 00:00:00

  • Computer-assisted centrifugal elutriation. II. Multiparametric statistical analysis.

    abstract::A combination of non-interactive statistical methods is discussed to analyze multiparametric light-scatter data obtained by means of computer-assisted centrifugal elutriation. ...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(88)90101-0

    authors: Sloot PM,Van der Donk EH,Figdor CG

    更新日期:1988-07-01 00:00:00

  • CONV--convolution for responses to a finite diameter photon beam incident on multi-layered tissues.

    abstract::A convolution program (CONV) solving responses to a collimated finite diameter photon beam perpendicularly incident on a multi-layered tissue has been coded in ANSI Standard C, hence, the program can be executed on various computers. The program, employing an extended trapezoidal rule for integration, convolves the re...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/s0169-2607(97)00021-7

    authors: Wang L,Jacques SL,Zheng L

    更新日期:1997-11-01 00:00:00

  • A framework for building and simulating qualitative models of compartmental systems.

    abstract::This paper describes a framework, called QCMF (Qualitative Compartmental Modeling Framework), which assists the user in formulating models of a pathophysiological system and in analyzing their behaviors through the simulation of the effects of a variety of pathogenetic mechanisms and therapeutical treatments. QCMF has...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(94)90096-5

    authors: Ironi L,Stefanelli M

    更新日期:1994-04-01 00:00:00

  • Cross-sectional photoacoustic tomography image reconstruction with a multi-curve integration model.

    abstract:BACKGROUND AND OBJECTIVE:In acoustic inversion of photoacoustic tomography (PAT), an imaging model that precisely describes both the ultrasonic wave propagation and the detector properties is of crucial importance. Inspired by the multi-stripe integration model in clinical X-ray computed tomography systems, in this wor...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2020.105731

    authors: Qi L,Huang S,Li X,Zhang S,Lu L,Feng Q,Chen W

    更新日期:2020-12-01 00:00:00

  • Mathematical model of electrotonic interactions during excitation and repolarisation of myocardial tissue.

    abstract::A discrete model has been developed which reproduces the intercellular electrophysiological processes within a block of myocardial tissue. The behaviour of individual elements is introduced in the form of the digitised physiologic and premature action potentials which are comprehended as series of jumps between discre...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(91)90070-a

    authors: Malik M

    更新日期:1991-06-01 00:00:00

  • NONMEMory: a run management tool for NONMEM.

    abstract::NONMEM is an extremely powerful tool for nonlinear mixed-effect modelling and simulation of pharmacokinetic and pharmacodynamic data. However, it is a console-based application whose output does not lend itself to rapid interpretation or efficient management. NONMEMory has been created to be a comprehensive project ma...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2005.02.003

    authors: Wilkins JJ

    更新日期:2005-06-01 00:00:00

  • A new hybrid intelligent system for accurate detection of Parkinson's disease.

    abstract::Elderly people are commonly affected by Parkinson's disease (PD) which is one of the most common neurodegenerative disorders due to the loss of dopamine-producing brain cells. People with PD's (PWP) may have difficulty in walking, talking or completing other simple tasks. Variety of medications is available to treat P...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2014.01.004

    authors: Hariharan M,Polat K,Sindhu R

    更新日期:2014-03-01 00:00:00

  • Using the job-exposure matrix for elaborating job histories.

    abstract::A first software (JHS) for the elaboration of job histories oriented toward risks was designed and results published In an article "A software for the elaboration of Job Histories". This article presents a second software (JES), based on the use of a job-exposure matrix designed for one company. The matrix is essentia...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(92)90056-d

    authors: Martin JM,Mouaddib AI,Bouzid M,Robaux P

    更新日期:1992-09-01 00:00:00

  • Development and applications of an interactive digital filter design program.

    abstract::We have implemented an interactive digital filter design program in the HP 1000 computer at the Department of Electrical Engineering of the University of Washington. This program allows users to design different types of filters interactively with both amplitude and phase responses displayed on graphic devices. The pe...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(85)90058-6

    authors: Woo HW,Kim YM,Tompkins WJ

    更新日期:1985-10-01 00:00:00

  • Mathematical modelling of the lower urinary tract.

    abstract::The lower urinary tract is one of the most complex biological systems of the human body as it involved hydrodynamic properties of urine and muscle. Moreover, its complexity is increased to be managed by voluntary and involuntary neural systems. In this paper, a mathematical model of the lower urinary tract it is propo...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2012.09.005

    authors: Paya AS,Fernandez DR,Gil D,Garcia Chamizo JM,Perez FM

    更新日期:2013-03-01 00:00:00

  • Diagnostic reasoning and medical decision-making with fuzzy influence diagrams.

    abstract::Influence diagrams have been widely used as knowledge bases in medical informatics and many applied domains. In conventional influence diagrams, the numerical models of uncertainty are probability distributions associated with chance nodes and value tables for value nodes. However, when incomplete knowledge or linguis...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2007.11.009

    authors: Kao HY

    更新日期:2008-04-01 00:00:00

  • Simulation of blood flow in arteries with aneurysm: Lattice Boltzmann Approach (LBM).

    abstract:BACKGROUND AND OBJECTIVE:In most countries, the higher death rates are due to cardiovascular disease and stroke. These problems often derive from irregular blood flow and the circulatory system disorder. METHODS:In this paper, the blood flow is simulated in a created aneurysm in the artery upon using Lattice Boltzmann...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2019.105312

    authors: Afrouzi HH,Ahmadian M,Hosseini M,Arasteh H,Toghraie D,Rostami S

    更新日期:2020-04-01 00:00:00

  • Microcomputer program for automated action potential waveform analysis.

    abstract::A program for action potential waveform analysis based on a PC compatible computer is described. Single or averaged action potentials are analyzed by obtaining its first derivative and using criteria which allow automatic measurement of several action potential components, including: depolarization rate, repolarizatio...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/s0169-2607(00)00053-5

    authors: Soto E,Salceda E,Cruz R,Ortega A,Vega R

    更新日期:2000-06-01 00:00:00

  • On the magnetic aggregation of Fe3O4 nanoparticles.

    abstract::Background and objective In-vivo MRI-guided drug delivery concept is a personalized technique towards cancer treatment. A major bottleneck of this method, is the weak magnetic response of nanoparticles. A crucial improvement is the usage of paramagnetic nanoparticles aggregates since they can easier manipulated in hum...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2020.105778

    authors: Karvelas EG,Lampropoulos NK,Benos LT,Karakasidis T,Sarris IE

    更新日期:2021-01-01 00:00:00

  • Median and quantile tests under complex survey design using SAS and R.

    abstract::Techniques for conducting hypothesis testing on the median and other quantiles of two or more subgroups under complex survey design are limited. In this paper, we introduce programs in both SAS and R to perform such a test. A detailed illustration of the computations, macro variable definitions, input and output for t...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2014.07.007

    authors: Pan Y,Caudill SP,Li R,Caldwell KL

    更新日期:2014-11-01 00:00:00

  • Construction of the flow rate nomogram using polynomial regression.

    abstract::The urinary flow rates of normal individuals depend on the initial bladder volume in a non-linear fashion (J. Urol. 109 (1973) 874). A flow rate nomogram was developed by Siroky, Olsson and Krane, (J. Vol. 122 (1979) 665), taking the non-linear relationship into account, as an aid in the interpretation of urinary flow...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(93)90030-o

    authors: Hosmane B,Maurath C,McConnell M

    更新日期:1993-04-01 00:00:00

  • A new approach for arrhythmia classification using deep coded features and LSTM networks.

    abstract:BACKGROUND AND OBJECTIVE:For diagnosis of arrhythmic heart problems, electrocardiogram (ECG) signals should be recorded and monitored. The long-term signal records obtained are analyzed by expert cardiologists. Devices such as the Holter monitor have limited hardware capabilities. For improved diagnostic capacity, it w...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2019.05.004

    authors: Yildirim O,Baloglu UB,Tan RS,Ciaccio EJ,Acharya UR

    更新日期:2019-07-01 00:00:00

  • ARTEMIS-2: an application development experiment with the HELIOS environment.

    abstract::A medical application is a highly complex system that embraces many data types and a very large number of data processing functions and methods. The development of integrated software engineering environments has deeply changed the conception of applications and the profile of the application developers. In this paper...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:

    authors: Lemaitre D,Jaulent MC,Günnel U,Demiris AM,Michel PA,Rassinoux AM,Göransson B,Olsson E,Degoulet P

    更新日期:1994-12-01 00:00:00

  • A program for the user-independent computation of the correlation dimension and the largest Lyapunov exponent of heart rate dynamics from small data sets.

    abstract::We propose a specially optimized computer program for the user-independent calculation of the correlation dimension D and the largest Lyapunov exponent L of heart rate dynamics on the basis of only 1024 electrocardiographically recorded RR intervals (heartbeat intervals). The validity of our program was established by...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 临床试验,杂志文章

    doi:10.1016/0169-2607(95)01707-0

    authors: Ganz RE,Lenz C

    更新日期:1996-01-01 00:00:00

  • Controlled multicenter study on the effect of computer assistance in intensive insulin therapy of type 1 diabetics.

    abstract::This paper describes the results of a controlled multicenter study on the effect of the computer assistance in the intensive insulin therapy. The patient collective consisted of 50 diabetics, randomly divided in two groups with 25 patients per group. The Multiple Subcutaneous Injection (MSI) group was treated with the...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 临床试验,杂志文章,多中心研究,随机对照试验

    doi:10.1016/s0169-2607(02)00034-2

    authors: Schrezenmeir J,Dirting K,Papazov P

    更新日期:2002-08-01 00:00:00

  • A survey on histological image analysis-based assessment of three major biological factors influencing radiotherapy: proliferation, hypoxia and vasculature.

    abstract::Image analysis is a rapidly evolving field with growing applications in science and engineering. In cancer research, it has played a key role in advancing techniques of major diagnostic importance, minimising human intervention and providing vital clinical information. Especially in the field of tissue microscopy, the...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2003.07.001

    authors: Loukas CG,Linney A

    更新日期:2004-06-01 00:00:00

  • CANSURV: A Windows program for population-based cancer survival analysis.

    abstract::Patient survival is one of the most important measures of cancer patient care (the diagnosis and treatment of cancer). The optimal method for monitoring the progress of patient care across the full spectrum of provider settings is through the population-based study of cancer patient survival, which is only possible us...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2005.08.002

    authors: Yu B,Tiwari RC,Cronin KA,McDonald C,Feuer EJ

    更新日期:2005-12-01 00:00:00

  • The effect of particulate matter size on cardiovascular health in Taipei Basin, Taiwan.

    abstract:BACKGROUND:Although the overall effect of particulate matter (PM) on cardiovascular disease (CVD) has been previously documented, the effect of different PM sizes (PM10, PM2.5-10 and PM2.5) has not been well studied. This study estimates the effect of different PM sizes on the incidence of CVD in Taipei, Taiwan. METHO...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2016.08.014

    authors: Yang HC,Chang SH,Lu R,Liou DM

    更新日期:2016-12-01 00:00:00

  • MARVIN: a medical research application framework based on open source software.

    abstract::This paper describes the open source framework MARVIN for rapid application development in the field of biomedical and clinical research. MARVIN applications consist of modules that can be plugged together in order to provide the functionality required for a specific experimental scenario. Application modules work on ...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2008.04.007

    authors: Rudolph T,Puls M,Anderegg C,Ebert L,Broehan M,Rudin A,Kowal J

    更新日期:2008-08-01 00:00:00

  • Novel atlas of fiber directions built from ex-vivo diffusion tensor images of porcine hearts.

    abstract::Cardiac MR image-based predictive models integrating statistical atlases of heart anatomy and fiber orientations can aid in better diagnosis of cardiovascular disease, a major cause of death worldwide. Such atlases have been built from diffusion tensor (DT) images and can be used in anisotropic models for personalized...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2019.105200

    authors: Mojica M,Pop M,Sermesant M,Ebrahimi M

    更新日期:2020-04-01 00:00:00