Abstract:
:Structural and functional genomics investigations are making an important impact on the current understanding and application of microbial agents used for plant disease control. Here, we review the case of Trichoderma spp., the most widely applied biocontrol fungi, which have been extensively studied using a variety of research approaches, including genomics, transcriptomics, proteomics, metabolomics, etc. Known for almost a century for their beneficial effects on plants and the soil, these fungi are the subject of investigations that represent a successful case of translational research, in which 'omics-generated novel understanding is directly translated in to new or improved crop treatments and management methods. We present an overview of the latest discoveries on the Trichoderma expressome and metabolome, of the complex and diverse biotic interactions established in nature by these microbes, and of their proven or potential importance to agriculture and industry.
journal_name
Annu Rev Phytopatholjournal_title
Annual review of phytopathologyauthors
Lorito M,Woo SL,Harman GE,Monte Edoi
10.1146/annurev-phyto-073009-114314subject
Has Abstractpub_date
2010-01-01 00:00:00pages
395-417eissn
0066-4286issn
1545-2107journal_volume
48pub_type
杂志文章,评审abstract::Banana (Musa spp.) is one of the world's most valuable primary agricultural commodities. Exported fruit are key commodities in several producing countries yet make up less than 15% of the total annual output of 145 million metric tons (MMT). Transnational exporters market fruit of the Cavendish cultivars, which are us...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-080614-120305
更新日期:2015-01-01 00:00:00
abstract::Land plants host a vast and diverse virome that is dominated by RNA viruses, with major additional contributions from reverse-transcribing and single-stranded (ss) DNA viruses. Here, we introduce the recently adopted comprehensive taxonomy of viruses based on phylogenomic analyses, as applied to the plant virome. We f...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev-phyto-030320-041346
更新日期:2020-08-25 00:00:00
abstract::The heterothallic ascomycete, Magnaporthe grisea, is the blast pathogen of rice and about 50 other grasses, and has potential for sexual and asexual reproduction. In most populations, data from mating type, fertility assays, and genotypic diversity strongly suggest that the pathogen is asexual. However, parasexual rec...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev.phyto.36.1.249
更新日期:1998-01-01 00:00:00
abstract::Starting with the influences of having a father who was an agricultural plant pathologist, I sketch my career through university and research institute from field epidemiology, basic virus characterization to molecular biology. I note what I consider to be the highlights of my scientific career and the events that sha...
journal_title:Annual review of phytopathology
pub_type: 历史文章,杂志文章,评审
doi:10.1146/annurev.phyto.46.110807.094143
更新日期:2008-01-01 00:00:00
abstract::Soybean hosts a wide variety of pathogens that cause significant yield losses. The importance of soybean as a major oilseed crop has led to research focused on its interactions with pathogens, such as Soybean mosaic virus, Pseudomonas syringae, Phytophthora sojae, Phakopsora pachyrhizi, and Heterodera glycines. Pionee...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-080615-100156
更新日期:2016-08-04 00:00:00
abstract::When plants recognize potential opponents, invading pathogens, wound signals, or abiotic stress, they often switch to a primed state of enhanced defense. However, defense priming can also be induced by some natural or synthetic chemicals. In the primed state, plants respond to biotic and abiotic stress with faster and...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-080614-120132
更新日期:2015-01-01 00:00:00
abstract::This review examines the discovery of naturally occurring phytochemicals antagonistic toward plant-parasitic and other nematodes. Higher plants have yielded a broad spectrum of active compounds, including polythienyls, isothiocyanates, glucosinolates, cyanogenic glycosides, polyacetylenes, alkaloids, lipids, terpenoid...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.40.032602.130045
更新日期:2002-01-01 00:00:00
abstract::The relationship between epidemiology and disease management is long-standing but sometimes tenuous. It may seem self-evident that improved understanding of epidemic processes will lead to more effective control practices but this remains a testable proposition rather than demonstrated reality. A wide range of models ...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.42.040803.140427
更新日期:2004-01-01 00:00:00
abstract::The interaction between tomato and the leaf mold pathogen Cladosporium fulvum is controlled in a gene-for-gene manner. This interaction has provided useful insights to the molecular basis of recognition specificity in plant disease resistance (R) proteins, disease resistance (R) gene evolution, R-protein mediated sign...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.43.040204.140224
更新日期:2005-01-01 00:00:00
abstract::Economic, environmental, and technological influences complicate the task of achieving disease-free products in the ornamentals industry. Integrated pest management (IPM) is a cornerstone of floriculture and nursery crop production: strategies include sanitation, clean stock, host resistance, and control through biolo...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.43.040204.140007
更新日期:2005-01-01 00:00:00
abstract::Quorum sensing (QS) allows bacteria to assess their local population density and/or physical confinement via the secretion and detection of small, diffusible signal molecules. This review describes how phytopathogenic bacteria have incorporated QS mechanisms into complex regulatory cascades that control genes for path...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.41.052002.095652
更新日期:2003-01-01 00:00:00
abstract::Positive strand RNA viral genomes are unique in the viral world in serving a dual role as mRNA and replicon. Since the origin of the minus-strand RNA replication intermediate is at the 3'-end of the genome, the 3'-untranslated region (UTR) clearly plays a role in viral RNA replication. The messenger role of this same ...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev.phyto.37.1.151
更新日期:1999-01-01 00:00:00
abstract::A major challenge facing agricultural scientists today is the need to secure food for an increasing world population. This growth occurs predominantly in developing, mostly tropical countries, where the majority of hungry people live. Reducing yield losses caused by pathogens of tropical agricultural crops is one meas...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.45.062806.094438
更新日期:2007-01-01 00:00:00
abstract::Systems biology attempts to answer biological questions by integrating across diverse genomic data sets. With the increasing ability to conduct genomics experiments, this integrative approach is being rapidly applied across numerous biological research communities. One of these research communities investigates how pl...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-081211-172950
更新日期:2012-01-01 00:00:00
abstract::Soft-rot Enterobacteriaceae (SRE), which belong to the genera Pectobacterium and Dickeya, consist mainly of broad host-range pathogens that cause wilt, rot, and blackleg diseases on a wide range of plants. They are found in plants, insects, soil, and water in agricultural regions worldwide. SRE encode all six known pr...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-081211-173013
更新日期:2012-01-01 00:00:00
abstract::Plasmids are common residents of phytopathogenic bacteria and contribute significantly to host evolution in a multi-faceted manner. Plasmids tend to encode determinants of virulence and ecological fitness that can enhance adaptation to a specific niche or can influence niche expansion. Many of these determinants appea...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.45.062806.094317
更新日期:2007-01-01 00:00:00
abstract::All plant-microbe interactions are initiated at the level of the cell. Recently, the light microscope has increased in popularity as an investigative tool in plant cell biology, in part because of the parallel developments of confocal laser scanning and video microscopy, computerized image processing, and an ever-incr...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev.phyto.38.1.443
更新日期:2000-09-01 00:00:00
abstract::Plant disease arises from the interaction of processes occurring at multiple spatial and temporal scales. With new tools such as next-generation sequencing, we are learning about the diversity of microbes circulating within and among plant populations and often coinhabiting host individuals. The proliferation of patho...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-080615-095959
更新日期:2016-08-04 00:00:00
abstract::Plant-parasitic nematodes are the most destructive group of plant pathogens worldwide and are extremely challenging to control. The recent completion of two root-knot nematode genomes opens the way for a comparative genomics approach to elucidate the success of these parasites. Sequencing revealed that Meloidogyne hap...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-080508-081839
更新日期:2009-01-01 00:00:00
abstract::The vast surface of the plant axis, stretching from root tips occasionally buried deeply in anoxic sediment, to apical meristems held far aloft, provides an extraordinarily diverse habitat for microorganisms. Each zone has to a greater or lesser extent its own cohort of microorganisms, in aggregate comprising represen...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev.phyto.38.1.145
更新日期:2000-09-01 00:00:00
abstract::During the Cold War, coffee became a strategically important crop in the global contest between the United States and the Soviet Union. The economies of many US allies in Latin America depended upon coffee. In the Cold War context, then, the coffee leaf rust (Hemileia vastatrix) became a geopolitical problem. Coffee e...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev-phyto-082718-100109
更新日期:2020-08-25 00:00:00
abstract::I relate my becoming a phytopathologist and my very satisfying growth into and beyond IPM to holistic plant health, and puzzle over paradigms that have prevented our accepting the overwhelming logic of (a) seeking defensible disease-loss data to justify funding and guide research and management priorities, (b) managin...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev.phyto.36.1.1
更新日期:1998-01-01 00:00:00
abstract::The genus Verticillium encompasses phytopathogenic species that cause vascular wilts of plants. In this review, we focus on Verticillium dahliae, placing emphasis on the controversy surrounding the elevation of a long-spored variant as a new species, recent advances in the analysis of compatible and incompatible inter...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-080508-081748
更新日期:2009-01-01 00:00:00
abstract::The study of plant disease epidemics at a landscape scale can be extended to allow for predictions about disease occurrence at this scale. Examined within the context of the disease triangle, systems developed to incorporate information primarily about the pathogen and conditions conducive to the infection process. Pa...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-080614-120406
更新日期:2015-01-01 00:00:00
abstract::A fundamental issue in biology is the question of how bacteria initiate and maintain pathogenic relationships with eukaryotic hosts. Despite billions of years of coexistence, far less is known about bacterial/fungal interactions than the equivalent associations formed by either of these types of microorganisms with hi...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-080508-081729
更新日期:2009-01-01 00:00:00
abstract::The phytohormone ethylene is a principal modulator in many aspects of plant life, including various mechanisms by which plants react to pathogen attack. Induced ethylene biosynthesis and subsequent intracellular signaling through a single conserved pathway have been well characterized. This leads to a cascade of trans...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.44.070505.143440
更新日期:2006-01-01 00:00:00
abstract::The role and functioning of the anterior chemosensory organs of plant parasitic nematodes is examined, with particular emphasis on the amphids. The morphology of the amphids is discussed primarily in the context of the changes in the ultrastructure associated with different life stages. The involvement of amphidial se...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev.phyto.34.1.181
更新日期:1996-01-01 00:00:00
abstract::Disease diagnosis is based on a number of factors, including laboratory tests for pathogen identification. Rapid development of genomic techniques for characterization of bacteria over the past decade has greatly simplified and improved pathogen detection and identification, but DNA-based methods have not yet entirely...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.42.040803.140329
更新日期:2004-01-01 00:00:00
abstract::Farmers increasingly leave crop residues on the soil surface rather than incorporating them into the soil. This practice helps reduce soil erosion, conserve energy, increase soil moisture, and increase crop yields. However, many soilborne plant pathogens survive in the previous year's crop residue, making diseases mor...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev.phyto.36.1.485
更新日期:1998-01-01 00:00:00
abstract::Bacteria have many export and secretion systems that translocate cargo into and across biological membranes. Seven secretion systems contribute to pathogenicity by translocating proteinaceous cargos that can be released into the extracellular milieu or directly into recipient cells. In this review, we describe these s...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-011014-015624
更新日期:2014-01-01 00:00:00