Optimizing the binding activity of the AP2/ERF transcription factor with the GCC box element from Brassica napus by directed evolution.

Abstract:

:In this study, we cloned the ERF-B3 subfamily transcription factor gene BnaERF-B3-hy15 from Brassica napus L. Huyou15. This 600 bp gene encodes a 199 amino acid classic ethylene responsive factor (ERF), which shown no binding or very weak binding GCC box-binding activity by the yeast one-hybrid assay. We used gene shuffling and the yeast one-hybrid system to obtain three mutated sequences that can bind to the GCC box. Sequence analysis indicated that two residues, Gly156 in the AP2 domain and Phe62 at the N-terminal domain were mutated to arginine and serine, respectively. Changes of Gly156 to arginine and Phe62 to serine increased the GCCbinding activity of BnaERF-B3-hy15 and the alter of Gly156 to arginine changed the AP2-domain structure of BnaERF-B3- hy15.

journal_name

BMB Rep

journal_title

BMB reports

authors

Jin XF,Zhu B,Peng RH,Jiang HH,Chen JM,Zhuang J,Zhang J,Yao QH,Xiong AS

doi

10.5483/bmbrep.2010.43.8.567

subject

Has Abstract

pub_date

2010-08-01 00:00:00

pages

567-72

issue

8

eissn

1976-6696

issn

1976-670X

journal_volume

43

pub_type

杂志文章
  • miR-3074-3p promotes myoblast differentiation by targeting Cav1.

    abstract::Muscle fibers are generally formed as multinucleated fibers that are differentiated from myoblasts. Several reports have identified transcription factors and proteins involved in the process of muscle differentiation, but the roles of microRNAs (miRNAs) in myogenesis remain unclear. Here, comparative analysis of the m...

    journal_title:BMB reports

    pub_type: 新闻

    doi:

    authors: Lee B,Shin YJ,Lee SM,Son YH,Yang YR,Lee KP

    更新日期:2020-05-01 00:00:00

  • Suppression of MED19 expression by shRNA induces inhibition of cell proliferation and tumorigenesis in human prostate cancer cells.

    abstract::MED19 is a member of the Mediator that plays a key role in the activation and repression of signal transduction or the regulation of transcription in carcinomas. To tested the functional role of MED19 in human prostate cancer, we downregulated MED19 expression in prostate cancer cells (PC-3 and DU145) by lentivirus-me...

    journal_title:BMB reports

    pub_type: 杂志文章

    doi:10.5483/bmbrep.2011.44.8.547

    authors: Cui X,Xu D,Lv C,Qu F,He J,Chen M,Liu Y,Gao Y,Che J,Yao Y,Yu H

    更新日期:2011-08-01 00:00:00

  • Microbial linguistics: perspectives and applications of microbial cell-to-cell communication.

    abstract::Inter-cellular communication via diffusible small molecules is a defining character not only of multicellular forms of life but also of single-celled organisms. A large number of bacterial genes are regulated by the change of chemical milieu mediated by the local population density of its own species or others. The ce...

    journal_title:BMB reports

    pub_type: 杂志文章,评审

    doi:10.5483/BMBRep.2011.44.1.1

    authors: Mitchell RJ,Lee SK,Kim T,Ghim CM

    更新日期:2011-01-01 00:00:00

  • Phosphorylation of p53 at threonine 155 is required for Jab1-mediated nuclear export of p53.

    abstract::The Jun activation-domain binding protein 1 (Jab1) induces p53 nuclear export and cytoplasmic degradation, but the underlying mechanism is poorly understood. Here, we show that phosphorylation at the threonine 155 residue is essential for Jab1-mediated p53 nuclear export. Jab1 stimulated phosphorylation of p53 at T155...

    journal_title:BMB reports

    pub_type: 新闻

    doi:10.5483/bmbrep.2017.50.7.077

    authors: Lee EW,Oh W,Song HP,Kim WK

    更新日期:2017-07-01 00:00:00

  • Revisiting PPARγ as a target for the treatment of metabolic disorders.

    abstract::As the prevalence of obesity has increased explosively over the last several decades, associated metabolic disorders, including type 2 diabetes, dyslipidemia, hypertension, and cardiovascular diseases, have been also increased. Thus, new strategies for preventing and treating them are needed. The nuclear peroxisome pr...

    journal_title:BMB reports

    pub_type: 杂志文章,评审

    doi:10.5483/bmbrep.2014.47.11.174

    authors: Choi SS,Park J,Choi JH

    更新日期:2014-11-01 00:00:00

  • p53 is not necessary for nuclear translocation of GAPDH during NO-induced apoptosis.

    abstract::Aberrant GAPDH expression following S-nitrosoglutathione (GSNO) treatment was compared in HepG2 cells, which express functional p53, and Hep3B cells, which lack functional p53. The results of Western blotting and fluorescent immunocytochemistry revealed that nuclear translocation and accumulation of GAPDH occur in bot...

    journal_title:BMB reports

    pub_type: 杂志文章

    doi:10.5483/bmbrep.2011.44.12.782

    authors: Kim JJ,Lee MY

    更新日期:2011-12-01 00:00:00

  • Zinc finger protein 143 expression is closely related to tumor malignancy via regulating cell motility in breast cancer.

    abstract::We previously reported the involvement of zinc-finger protein 143 (ZNF143) on cancer cell motility in colon cancer cells. Here, ZNF143 was further characterized in breast cancer. Immunohistochemistry was used to determine the expression of ZNF143 in normal tissues and in tissues from metastatic breast cancer at variou...

    journal_title:BMB reports

    pub_type: 新闻

    doi:10.5483/bmbrep.2017.50.12.177

    authors: Paek AR,Mun JY,Hong KM,Lee J,Hong DW,You HJ

    更新日期:2017-12-01 00:00:00

  • The expanding reach of the GAL4/UAS system into the behavioral neurobiology of Drosophila.

    abstract::Our understanding of the relationships between genes, brains, and behaviors has changed a lot since the first behavioral mutants were isolated in the fly bottles of the Benzer lab at Caltech (1), but Drosophila is still an excellent model system for studying the neurobiology of behavior. Recent advances provide an unp...

    journal_title:BMB reports

    pub_type: 杂志文章,评审

    doi:10.5483/bmbrep.2009.42.11.705

    authors: Jones WD

    更新日期:2009-11-30 00:00:00

  • KBTBD7, a novel human BTB-kelch protein, activates transcriptional activities of SRE and AP-1.

    abstract::In this study, a novel member of BTB-kelch proteins, named KBTBD7, was cloned from a human embryonic heart cDNA library. The cDNA of KBTBD7 is 3,008 bp long and encodes a protein product of 684 amino acids (77.2 kD). This protein is highly conserved in evolution across different species. Western blot analysis indicate...

    journal_title:BMB reports

    pub_type: 杂志文章

    doi:10.5483/bmbrep.2010.43.1.017

    authors: Hu J,Yuan W,Tang M,Wang Y,Fan X,Mo X,Li Y,Ying Z,Wan Y,Ocorr K,Bodmer R,Deng Y,Wu X

    更新日期:2010-01-01 00:00:00

  • Glycosylation modification of human prion protein provokes apoptosis in HeLa cells in vitro.

    abstract::We investigate the correlation between the glycosylation modified prion proteins and apoptosis. The wild-type PRNP gene and four PRNP gene glycosylated mutants were transiently expressed in HeLa cells. The effect of apoptosis induced by PrP mutants was confirmed by MTT assay, Hochest staining, Annexin-V staining and P...

    journal_title:BMB reports

    pub_type: 杂志文章

    doi:10.5483/bmbrep.2009.42.6.331

    authors: Yang Y,Chen L,Pan HZ,Kou Y,Xu CM

    更新日期:2009-06-30 00:00:00

  • Influence of the lung mechanical ventilation with injurious parameters on 7-ketocholesterol synthesis in Sus Scrofa.

    abstract::The aim of work was to investigate changes of 7-ketocholesterol synthesis in alveolar macrophages in the dynamic of lung mechanical ventilation with injurious parameters. The goal of in vitro part of work was to observe influence of 7-ketocholesterol on iNOS and MIP1 Beta production in bronchoalveolar lavage fluid (BA...

    journal_title:BMB reports

    pub_type: 杂志文章

    doi:10.5483/bmbrep.2010.43.4.257

    authors: Klimenko OV,Vobruba V,Martasek P

    更新日期:2010-04-01 00:00:00

  • Regulation of signal transducer and activator of transcription 3 activation by dual-specificity phosphatase 3.

    abstract::Since cancer is the leading cause of death worldwide, there is an urgent need to understand the mechanisms underlying cancer progression and the development of cancer inhibitors. Signal transducer and activator of transcription 3 (STAT3) is a major transcription factor that regulates the proliferation and survival of ...

    journal_title:BMB reports

    pub_type: 新闻

    doi:

    authors: Kim BR,Ha J,Kang E,Cho S

    更新日期:2020-06-01 00:00:00

  • An inhibitory alternative splice isoform of Toll-like receptor 3 is induced by type I interferons in human astrocyte cell lines.

    abstract::Toll-like receptor 3 (TLR3) recognizes viral double-stranded RNA. It stimulates pro-inflammatory cytokine and interferon production. Here we reported the expression of a novel isoform of TLR3 in human astrocyte cell lines whose message is generated by alternative splicing. The isoform represents the N-terminus of the ...

    journal_title:BMB reports

    pub_type: 杂志文章

    doi:10.5483/bmbrep.2015.48.12.106

    authors: Seo JW,Yang EJ,Kim SH,Choi IH

    更新日期:2015-12-01 00:00:00

  • Deubiquitinase YOD1: the potent activator of YAP in hepatomegaly and liver cancer.

    abstract::Advances in the understanding of the Hippo signaling as a key regulatory pathway of proliferation and apoptosis have provided mechanical insights for controlling organ size and tumorigenicity. Recently, much attention has been directed to the regulation of LATS1/2 (large tumor suppressor) kinases that phosphorylate YA...

    journal_title:BMB reports

    pub_type: 新闻

    doi:10.5483/bmbrep.2017.50.6.078

    authors: Kim Y,Jho EH

    更新日期:2017-06-01 00:00:00

  • Gene repressive mechanisms in the mouse brain involved in memory formation.

    abstract::Gene regulation in the brain is essential for long-term plasticity and memory formation. Despite this established notion, the quantitative translational map in the brain during memory formation has not been reported. To systematically probe the changes in protein synthesis during memory formation, our recent study exp...

    journal_title:BMB reports

    pub_type: 新闻

    doi:10.5483/bmbrep.2016.49.4.044

    authors: Yu NK,Kaang BK

    更新日期:2016-04-01 00:00:00

  • Phospholipase A(2), reactive oxygen species, and lipid peroxidation in CNS pathologies.

    abstract::The importance of lipids in cell signaling and tissue physiology is demonstrated by the many CNS pathologies involving deregulated lipid metabolism. One such critical metabolic event is the activation of phospholipase A(2) (PLA(2)), which results in the hydrolysis of membrane phospholipids and the release of free fatt...

    journal_title:BMB reports

    pub_type: 杂志文章,评审

    doi:10.5483/bmbrep.2008.41.8.560

    authors: Adibhatla RM,Hatcher JF

    更新日期:2008-08-31 00:00:00

  • Hemistepsin A inhibits T0901317-induced lipogenesis in the liver.

    abstract::Hemistepsin A (HsA) is a guaianolide sesquiterpene lactone that inhibits hepatitis and liver fibrosis. We evaluated the effects of HsA on liver X receptor (LXR)-mediated hepatic lipogenesis in vitro and in vivo. Up to 10 M, HsA did not affect the viability of HepG2 and Huh7 cells. Pretreatment with 5-10 μM HsA signif...

    journal_title:BMB reports

    pub_type: 新闻

    doi:

    authors: Kim JK,Cho IJ,Kim EO,Lee DG,Jung DH,Ki SH,Ku SK,Kim SC

    更新日期:2020-08-26 00:00:00

  • Role of dipeptidyl peptidase-4 as a potentiator of activin/nodal signaling pathway.

    abstract::DPP4 (dipeptidyl peptidase-4), a highly conserved transmembrane glycoprotein with an exo-peptidase activity, has been shown to contribute to glucose metabolism, immune regulation, signal transduction, and cell differentiation. Here, we show that DPP4 is involved in control of activin/nodal signaling in Xenopus early d...

    journal_title:BMB reports

    pub_type: 杂志文章

    doi:

    authors: Park DS,Kim K,Jang M,Choi SC

    更新日期:2018-12-01 00:00:00

  • Current understanding of cancer-intrinsic PD-L1: regulation of expression and its protumoral activity.

    abstract::In the last decade, we have witnessed an unprecedented clinical success in cancer immunotherapies targeting the programmed cell-death ligand 1 (PD-L1) and programmed cell-death 1 (PD-1) pathway. Besides the fact that PD-L1 plays a key role in immune regulation in tumor microenvironment, recently a plethora of reports ...

    journal_title:BMB reports

    pub_type: 新闻

    doi:

    authors: Yadollahi P,Jeon YK,Ng WL,Choi I

    更新日期:2021-01-01 00:00:00

  • Suppression of SIRT2 and altered acetylation status of human pluripotent stem cells: possible link to metabolic switch during reprogramming.

    abstract::Primed human pluripotent stem cells (hPSCs) are highly dependent on glycolysis rather than oxidative phosphorylation, which is similar to the metabolic switch that occurs in cancer cells. However, the molecular mechanisms that underlie this metabolic reprogramming in hPSCs and its relevance to pluripotency remain uncl...

    journal_title:BMB reports

    pub_type: 新闻

    doi:10.5483/bmbrep.2017.50.9.119

    authors: Kwon OS,Han MJ,Cha HJ

    更新日期:2017-09-01 00:00:00

  • NDRG3-mediated lactate signaling in hypoxia.

    abstract::Hypoxia is associated with many pathological conditions as well as the normal physiology of metazoans. We identified a lactate-dependent signaling pathway in hypoxia, mediated by the oxygen- and lactate-regulated protein NDRG family member 3 (NDRG3). Oxygen negatively regulates NDRG3 expression at the protein level vi...

    journal_title:BMB reports

    pub_type: 杂志文章

    doi:10.5483/bmbrep.2015.48.6.080

    authors: Park KC,Lee DC,Yeom YI

    更新日期:2015-06-01 00:00:00

  • Dexamethasone induces the expression of LRRK2 and α-synuclein, two genes that when mutated cause Parkinson's disease in an autosomal dominant manner.

    abstract::LRRK2 (leucine-rich repeat kinase 2) has been identified as a gene corresponding to PARK8, an autosomal-dominant gene for familial Parkinson's disease (PD). LRRK2 pathogenic-specific mutants induce neurotoxicity and shorten neurites. To elucidate the mechanism underlying LRRK2 expression, we constructed the LRRK2-prom...

    journal_title:BMB reports

    pub_type: 杂志文章

    doi:10.5483/bmbrep.2013.46.9.234

    authors: Park JM,Ho DH,Yun HJ,Kim HJ,Lee CH,Park SW,Kim YH,Son I,Seol W

    更新日期:2013-09-01 00:00:00

  • The roles of FADD in extrinsic apoptosis and necroptosis.

    abstract::Fas-associated protein with death domain (FADD), an adaptor that bridges death receptor signaling to the caspase cascade, is indispensible for the induction of extrinsic apoptotic cell death. Interest in the non-apoptotic function of FADD has greatly increased due to evidence that FADD-deficient mice or dominant-negat...

    journal_title:BMB reports

    pub_type: 杂志文章,评审

    doi:10.5483/bmbrep.2012.45.9.186

    authors: Lee EW,Seo J,Jeong M,Lee S,Song J

    更新日期:2012-09-01 00:00:00

  • Non-classical role of Galectin-3 in cancer progression: translocation to nucleus by carbohydrate-recognition independent manner.

    abstract::Galectin-3 is a carbohydrate-binding protein and regulates diverse functions, including cell proliferation and differentiation, mRNA splicing, apoptosis induction, immune surveillance and inflammation, cell adhesion, angiogenesis, and cancer-cell metastasis. Galectin-3 is also recommended as a diagnostic or prognostic...

    journal_title:BMB reports

    pub_type: 杂志文章,评审

    doi:

    authors: Kim SJ,Chun KH

    更新日期:2020-04-01 00:00:00

  • The linker connecting the tandem ubiquitin binding domains of RAP80 is critical for lysine 63-linked polyubiquitin-dependent binding activity.

    abstract::The tandem ubiquitin-interacting motif (UIM) domain located at the N-terminus of Receptor Associated Protein 80 (RAP80) plays a crucial role in ionizing radiation (IR)-induced DNA damage response. RAP80 translocates to sites of IR-induced DNA damage through interaction of its UIM domain with ubiquitinated H2A and Lys6...

    journal_title:BMB reports

    pub_type: 杂志文章

    doi:10.5483/bmbrep.2009.42.11.764

    authors: Cho HJ,Lee S,Kim H

    更新日期:2009-11-30 00:00:00

  • Characterization of full-length enriched expressed sequence tags of dehydration-treated white fibrous roots of sweetpotato.

    abstract::Sweetpotato (Ipomoea batatas (L). Lam.) is relatively tolerant to unfavorable growth conditions such as drought, yet has not been exploited to provide a better understanding of the molecular basis of drought stress tolerance. We obtained 983 high-quality expressed sequence tags of 100 bp or longer (average length of 7...

    journal_title:BMB reports

    pub_type: 杂志文章

    doi:10.5483/bmbrep.2009.42.5.271

    authors: Kim SH,Song WK,Kim YH,Kwon SY,Lee HS,Lee IC,Kwak SS

    更新日期:2009-05-31 00:00:00

  • Cohesin gene mutations in tumorigenesis: from discovery to clinical significance.

    abstract::Cohesin is a multi-protein complex composed of four core subunits (SMC1A, SMC3, RAD21, and either STAG1 or STAG2) that is responsible for the cohesion of sister chromatids following DNA replication until its cleavage during mitosis thereby enabling faithful segregation of sister chromatids into two daughter cells. Rec...

    journal_title:BMB reports

    pub_type: 杂志文章,评审

    doi:10.5483/bmbrep.2014.47.6.092

    authors: Solomon DA,Kim JS,Waldman T

    更新日期:2014-06-01 00:00:00

  • Overexpression of tumor necrosis factor receptor-associated protein 1 (TRAP1), leads to mitochondrial aberrations in mouse fibroblast NIH/3T3 cells.

    abstract::Cancer cells undergo uncontrolled proliferation, and aberrant mitochondrial alterations. Tumor necrosis factor receptor-associated protein 1 (TRAP1) is a mitochondrial heat shock protein. TRAP1 mRNA is highly expressed in some cancer cell lines and tumor tissues. However, the effects of its overexpression on mitochond...

    journal_title:BMB reports

    pub_type: 杂志文章

    doi:10.5483/bmbrep.2014.47.5.174

    authors: Im CN,Seo JS

    更新日期:2014-05-01 00:00:00

  • Polo-like kinase-1 in DNA damage response.

    abstract::Polo-like kinase-1 (Plk1) belongs to a family of serine-threonine kinases and plays a critical role in mitotic progression. Plk1 involves in the initiation of mitosis, centrosome maturation, bipolar spindle formation, and cytokinesis, well-reported as traditional functions of Plk1. In this review, we discuss the role ...

    journal_title:BMB reports

    pub_type: 杂志文章,评审

    doi:10.5483/bmbrep.2014.47.5.061

    authors: Hyun SY,Hwang HI,Jang YJ

    更新日期:2014-05-01 00:00:00

  • Monoacylglycerol O-acyltransferase 1 (MGAT1) localizes to the ER and lipid droplets promoting triacylglycerol synthesis.

    abstract::Monoacylglycerol acyltransferase 1 (MGAT) is a microsomal enzyme that catalyzes the synthesis of diacylglycerol (DAG) and triacylglycerol (TAG). However, the subcellular localization and catalytic function domain of this enzyme is poorly understood. In this report, we identified that murine MGAT1 localizes to the endo...

    journal_title:BMB reports

    pub_type: 新闻

    doi:10.5483/bmbrep.2017.50.7.036

    authors: Lee YJ,Kim JW

    更新日期:2017-07-01 00:00:00