Abstract:
:Mungbean (Vigna radiata (L.) Wilczek) is a unique species in its ability to fix atmospheric nitrogen, with early maturity, and relatively good drought resistance. We used 454 sequencing technology for transcriptome sequencing. A total of 150 159 and 142 993 reads produced 5 254 and 6 374 large contigs (≥ 500 bp) with an average length of 833 and 853 for Sunhwa and Jangan, respectively. Functional annotation to known sequences yielded 41.34% and 41.74% unigenes for Jangan and Sunhwa. A higher number of simple sequence repeat (SSR) motifs was identified in Jangan (1 630) compared with that of Sunhwa (1 334). A similar SSR distribution pattern was observed in both varieties. A total of 8 249 single nucleotide polymorphisms (SNPs) and indels with 2 098 high-confidence candidates were identified in the two mungbean varieties. The average distance between individual SNPs was approximately 860 bp. Our report demonstrates the utility of transcriptomic data for implementing a functional annotation and development of genetic markers. We also provide large resource sequence data for mungbean improvement programs.
journal_name
J Integr Plant Bioljournal_title
Journal of integrative plant biologyauthors
Moe KT,Chung JW,Cho YI,Moon JK,Ku JH,Jung JK,Lee J,Park YJdoi
10.1111/j.1744-7909.2010.01012.xsubject
Has Abstractpub_date
2011-01-01 00:00:00pages
63-73issue
1eissn
1672-9072issn
1744-7909journal_volume
53pub_type
杂志文章abstract::In anther development, tapetal cells take part in complex processes, including endomitosis and apoptosis (programmed cell death). The tapetum provides many of the proteins, lipids, polysaccharides and other molecules necessary for pollen development. Several transcription factors, including DYT1, TDF1, AMS, MS188 and ...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2011.01078.x
更新日期:2011-11-01 00:00:00
abstract::Modifications of inflorescence architecture have been crucial for the successful domestication of wheat and barley, which are central members of the Triticeae tribe that provide essential grains for the human diet. Investigation of the genes and alleles that underpin domestication-related traits has provided valuable ...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/jipb.12732
更新日期:2019-03-01 00:00:00
abstract::Abscission is the process by which plants discard organs in response to environmental cues/stressors, or as part of their normal development. Abscission has been studied throughout the history of the plant sciences and in numerous species. Although long studied at the anatomical and physiological levels, abscission ha...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/jipb.12116
更新日期:2013-12-01 00:00:00
abstract::Understanding plant resistance to pathogenic microbes requires detailed information on the molecular mechanisms controlling the execution of plant innate immune responses. A growing body of evidence places phosphoinositide-specific phospholipase C (PI-PLC) enzymes immediately downstream of activated immune receptors, ...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/jipb.12520
更新日期:2017-03-01 00:00:00
abstract::Angiosperms integrate a multitude of endogenous and environmental signals to control floral development, thereby ensuring reproductive success. Here, we report the identification of AGAMOUS AND TERMINAL FLOWER (AGTFL), a novel regulator of floral development in Medicago truncatula. Mutation of AGTFL led to the transfo...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12799
更新日期:2019-08-01 00:00:00
abstract::Atraphaxis has approximately 25 species and a distribution center in Central Asia. It has been previously used to hypothesize an origin from montane forest. We sampled 18 species covering three sections within the genus and sequenced five cpDNA spacers, atpB-rbcL, psbK-psbI, psbA-trnH, rbcL, and trnL-trnF. BEAST was u...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12226
更新日期:2014-12-01 00:00:00
abstract::Hydrogen sulfide (H2 S) is a newly-discovered signaling molecule in plants and has caused increasing attention in recent years, but its function in stomatal movement is unclear. In plants, H2 S is synthesized via cysteine degradation catalyzed by D-/L-cysteine desulfhydrase (D-/L-CDes). AtD-/L-CDes::GUS transgenic Ara...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12004
更新日期:2013-03-01 00:00:00
abstract::Plant thioglucosidases are the only known S-glycosidases in the large superfamily of glycosidases. These enzymes evolved more recently and are distributed mainly in Brassicales. Thioglucosidase research has focused mainly on the cruciferous crops due to their economic importance and cancer preventive benefits. In this...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2010.00988.x
更新日期:2010-10-01 00:00:00
abstract::This commentary highlights the recent two studies which uncovered dynamic maize kernel RNA-seq transcriptomes from early seed development, storage filling to maturation, day by day, hour by hour. These two studies provide a 'maize kernel gene expression dictionary' that will be powerful for the future studies in seed ...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12869
更新日期:2020-07-01 00:00:00
abstract::Studies that investigated the genetic basis of source and sink related traits have been widely conducted. However, the vascular system that links source and sink received much less attention. When maize was domesticated from its wild ancestor, teosinte, the external morphology has changed dramatically; however, less i...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12358
更新日期:2016-01-01 00:00:00
abstract::During plant development, distantly-located organs must communicate in order to adapt morphological and physiological features in response to environmental inputs. Among the recognized signaling molecules, a class of phytohormones known as the cytokinins functions as both local and long-distance regulatory signals for...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/j.1744-7909.2010.00898.x
更新日期:2010-01-01 00:00:00
abstract::Hormones are important signaling molecules regulating developmental processes and responses to environmental stimuli in higher plants. Rice endosperm, the portion of the seed surrounding the embryo, is the main determinant of rice grain shape and yield; however, the dynamics and exact functions of phytohormones in dev...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12927
更新日期:2020-10-01 00:00:00
abstract::During leaf organogenesis, a critical step for normal leaf primordium initiation is the repression of the class 1 KNOTTED1-like homeobox (KNOX) genes. After leaf primordia are formed, they must establish polarity for normal leaf morphogenesis. Recent studies have led to the identification of a number of genes that par...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2008.00693.x
更新日期:2008-07-01 00:00:00
abstract::Oryza meyeriana Baill (GG genome) is a precious germplasm in the tertiary gene pool of cultivated rice (AA genome), and possesses important traits such as resistance and tolerance to biotic and abiotic stress. However, interspecific crossability barrier, a critical bottleneck restricting genes transfer from O. meyeria...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2008.00728.x
更新日期:2009-01-01 00:00:00
abstract::Maize (Zea mays) root system architecture (RSA) mediates the key functions of plant anchorage and acquisition of nutrients and water. In this study, a set of 204 recombinant inbred lines (RILs) was derived from the widely adapted Chinese hybrid ZD958(Zheng58 × Chang7-2), genotyped by sequencing (GBS) and evaluated as ...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12452
更新日期:2016-03-01 00:00:00
abstract::The small phenolic compound salicylic acid (SA) plays an important regulatory role in multiple physiological processes including plant immune response. Significant progress has been made during the past two decades in understanding the SA-mediated defense signaling network. Characterization of a number of genes functi...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/j.1744-7909.2011.01043.x
更新日期:2011-06-01 00:00:00
abstract::Green Revolution made a substantial contribution to wheat yields worldwide in the 1960s and 1970s. It is of great importance to analyze the haplotype variation of Rht-D1, the Green Revolution gene, during wheat (Triticum aestivum L.) domestication and breeding to understand its evolution and function in wheat breeding...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12197
更新日期:2014-08-01 00:00:00
abstract::To effectively conserve sour orange (Citrus aurantium L.) germplasm on two islands at the estuary of the Yangtze River in China, we estimated genetic variation and relationships of the known parental trees and their proposed descendents (young trees) using the fingerprints of random amplified polymorphic DNA (RAPD). R...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2008.00768.x
更新日期:2009-01-01 00:00:00
abstract::Mutagenized populations have provided important materials for introducing variation and identifying gene function in plants. In this study, an ethyl methanesulfonate (EMS)-induced soybean (Glycine max) population, consisting of 21,600 independent M2 lines, was developed. Over 1,000 M4 (5) families, with diverse abnorm...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12505
更新日期:2017-01-01 00:00:00
abstract::Short RNAs are 20-24 nucleotide long non-coding RNA molecules generated by one of the Dicer-like enzymes. They recognize specific RNA or DNA sequences and guide the RNA silencing complex to their targets leading to post-transcriptional or transcriptional gene silencing of the target. Most of our knowledge about short ...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/j.1744-7909.2009.00871.x
更新日期:2010-04-01 00:00:00
abstract::With the enhancement of copper (Cu) stress, the germination percentage of wheat seeds decreased gradually. Pretreatment with sodium hydrosulfide (NaHS), hydrogen sulfide (H(2)S) donor alleviated the inhibitory effect of Cu stress in a dose-dependent manner; whereas little visible symptom was observed in germinating se...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2008.00769.x
更新日期:2008-12-01 00:00:00
abstract::In C3 plants, photorespiration is an energy-expensive process, including the oxygenation of ribulose-1,5-bisphosphate (RuBP) by ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco) and the ensuing multi-organellar photorespiratory pathway required to recycle the toxic byproducts and recapture a portion of the fix...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/jipb.12709
更新日期:2018-12-01 00:00:00
abstract::Fruit crops, including apple, orange, grape, banana, strawberry, watermelon, kiwifruit and tomato, not only provide essential nutrients for human life but also contribute to the major agricultural output and economic growth of many countries and regions in the world. Recent advancements in genome editing provides an u...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/jipb.12793
更新日期:2020-03-01 00:00:00
abstract::Exploitation of heterosis in rice (Oryza sativa L.) has contributed greatly to global food security. In this study, we generated three sets of reciprocal F1 hybrids of indica and japonica subspecies to evaluate the relationship between yield heterosis and the circadian clock. There were no differences in trait perform...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12240
更新日期:2015-03-01 00:00:00
abstract::Fusarium head blight (FHB) caused by Fusarium graminearum Schwabe (teleomorph Gibberella zeae (Schw.) Perch) results in large yield losses in annual global wheat production. Although studies have identified a number of wheat FHB resistance genes, a deeper understanding of the mechanisms underlying host plant resistanc...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12992
更新日期:2020-07-17 00:00:00
abstract::More than a billion people suffer from iron or zinc deficiencies globally. Rice (Oryza sativa L.) iron and zinc biofortification; i.e., intrinsic iron and zinc enrichment of rice grains, is considered the most effective way to tackle these deficiencies. However, rice iron biofortification, by means of conventional bre...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章,评审
doi:10.1111/jipb.12751
更新日期:2018-12-01 00:00:00
abstract::Nitrogen-limited conditions are considered to be a prerequisite for legume-rhizobial symbiosis, but the effects of nitrate-rich conditions on symbiotic status remain poorly understood. We addressed this issue by examining rhizobial (Rhizobim tropici) and arbusclar mycorrhizal (Glomus intraradices) symbiosis in Phaseol...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12156
更新日期:2014-03-01 00:00:00
abstract::A narrow leaf mutant was isolated from transgenic rice (Oryza sativa L.) lines carrying a T-DNA insertion. The mutant is characterized by narrow leaves during its whole growth period, and was named nal9 (narrow leaf 9). The mutant also has other phenotypes, such as light green leaves at the seedling stage, reduced pla...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/jipb.12098
更新日期:2013-11-01 00:00:00
abstract::Glutathione is an important antioxidant and has many important functions in plant development, growth and defense. Glutathione synthesis and degradation is highly compartment-specific and relies on the subcellular availability of its precursors, cysteine, glutamate, glycine and γ-glutamylcysteine especially in plastid...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2011.01085.x
更新日期:2011-12-01 00:00:00
abstract::Gene expression studies are important for revealing gene functions putatively involved in biological processes. We were interested in identifying differentially expressed genes during leaf development in rice. We combined the RNA arbitrarily primed-polymerase chain reaction (RAP-PCR) and dot blot hybridization methods...
journal_title:Journal of integrative plant biology
pub_type: 杂志文章
doi:10.1111/j.1744-7909.2008.00801.x
更新日期:2009-06-01 00:00:00