Sequence information on simple sequence repeats and single nucleotide polymorphisms through transcriptome analysis of mungbean.

Abstract:

:Mungbean (Vigna radiata (L.) Wilczek) is a unique species in its ability to fix atmospheric nitrogen, with early maturity, and relatively good drought resistance. We used 454 sequencing technology for transcriptome sequencing. A total of 150 159 and 142 993 reads produced 5 254 and 6 374 large contigs (≥ 500 bp) with an average length of 833 and 853 for Sunhwa and Jangan, respectively. Functional annotation to known sequences yielded 41.34% and 41.74% unigenes for Jangan and Sunhwa. A higher number of simple sequence repeat (SSR) motifs was identified in Jangan (1 630) compared with that of Sunhwa (1 334). A similar SSR distribution pattern was observed in both varieties. A total of 8 249 single nucleotide polymorphisms (SNPs) and indels with 2 098 high-confidence candidates were identified in the two mungbean varieties. The average distance between individual SNPs was approximately 860 bp. Our report demonstrates the utility of transcriptomic data for implementing a functional annotation and development of genetic markers. We also provide large resource sequence data for mungbean improvement programs.

journal_name

J Integr Plant Biol

authors

Moe KT,Chung JW,Cho YI,Moon JK,Ku JH,Jung JK,Lee J,Park YJ

doi

10.1111/j.1744-7909.2010.01012.x

subject

Has Abstract

pub_date

2011-01-01 00:00:00

pages

63-73

issue

1

eissn

1672-9072

issn

1744-7909

journal_volume

53

pub_type

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