Complete genome sequence of Ferroglobus placidus AEDII12DO.

abstract：:Meiothermus silvanus (Tenreiro et al. 1995) Nobre et al. 1996 belongs to a thermophilic genus whose members share relatively low degrees of 16S rRNA gene sequence similarity. Meiothermus constitutes an evolutionary lineage separate from members of the genus Thermus, from which they can generally be distinguished by th...

journal_title：Standards in genomic sciences

authors： Sikorski J,Tindall BJ,Lowry S,Lucas S,Nolan M,Copeland A,Glavina Del Rio T,Tice H,Cheng JF,Han C,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Goodwin L,Chen A,Palaniappan K,Land M,Hauser L,Chan

更新日期：2010-07-29 00:00:00

abstract：:Mesotoga strain PhosAc3 was the first mesophilic cultivated member of the order Thermotogales. This genus currently contain two described species, M. prima and M. infera. Strain PhosAc3, isolated from a Tunisian digestor treating phosphogypsum, is phylogenetically closely related to M. prima strain MesG1.Ag.4.2(T). St...

journal_title：Standards in genomic sciences

authors： Ben Hania W,Fadhlaoui K,Brochier-Armanet C,Persillon C,Postec A,Hamdi M,Dolla A,Ollivier B,Fardeau ML,Le Mer J,Erauso G

更新日期：2015-05-01 00:00:00

abstract：:The nonheterocystous filamentous cyanobacterium, strain ESFC-1, is a recently described member of the order Oscillatoriales within the Cyanobacteria. ESFC-1 has been shown to be a major diazotroph in the intertidal microbial mat system at Elkhorn Slough, CA, USA. Based on phylogenetic analyses of the 16S RNA gene, ESF...

journal_title：Standards in genomic sciences

authors： Everroad RC,Stuart RK,Bebout BM,Detweiler AM,Lee JZ,Woebken D,Prufert-Bebout L,Pett-Ridge J

更新日期：2016-08-24 00:00:00

abstract：:Roseovarius mucosus Biebl et al. 2005 is a bacteriochlorophyll a-producing representative of the marine Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, which was isolated from the dinoflagellate Alexandrium ostenfeldii. The marine Roseobacter group was found to be abundant in the ocean and p...

journal_title：Standards in genomic sciences

authors： Riedel T,Spring S,Fiebig A,Scheuner C,Petersen J,Göker M,Klenk HP

更新日期：2015-03-19 00:00:00

abstract：:Polynucleobacter necessarius subsp. asymbioticus strain QLW-P1DMWA-1(T) is a planktonic freshwater bacterium affiliated with the family Burkholderiaceae (class Betaproteobacteria). This strain is of interest because it represents a subspecies with cosmopolitan and ubiquitous distribution in standing freshwater systems...

journal_title：Standards in genomic sciences

authors： Meincke L,Copeland A,Lapidus A,Lucas S,Berry KW,Del Rio TG,Hammon N,Dalin E,Tice H,Pitluck S,Richardson P,Bruce D,Goodwin L,Han C,Tapia R,Detter JC,Schmutz J,Brettin T,Larimer F,Land M,Hauser L,Kyrpides NC,Iva

更新日期：2012-03-19 00:00:00

abstract：:The tenacious association between strains of the heterotrophic alphaproteobacterial genus Acidiphilium and chemolithotrophic iron oxidizing bacteria has long been known. In this context the genome of the heterotroph Acidiphilium sp. JA12-A1, an isolate from an iron oxidizing mixed culture derived from a pilot plant fo...

journal_title：Standards in genomic sciences

authors： Ullrich SR,Poehlein A,Voget S,Hoppert M,Daniel R,Leimbach A,Tischler JS,Schlömann M,Mühling M

更新日期：2015-08-19 00:00:00

abstract：:Although the hemipterans (Aphididae) are comprised of roughly 50,000 extant insect species, only four have sequenced genomes that are publically available, namely Acyrthosiphon pisum (pea aphid), Rhodnius prolixus (Kissing bug), Myzus persicae (Green peach aphid) and Diuraphis noxia (Russian wheat aphid). As a signifi...

journal_title：Standards in genomic sciences

authors： Burger NFV,Botha AM

更新日期：2017-12-28 00:00:00

abstract：:Phage ST0 lysing Escherichia coli H8 was isolated from wastewater and sequenced using an Illumina HiSeq system. Genomic analyses revealed that it was virulent phages and contained a circular double-stranded DNA genome, consisting of 170,496 nucleotides with an average G + C content of 37.67%. This study may provide po...

journal_title：Standards in genomic sciences

authors： Liu H,Liu X,Li J

更新日期：2017-12-19 00:00:00

abstract：:Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft genome sequence and ann...

journal_title：Standards in genomic sciences

authors： Ntougias S,Lapidus A,Copeland A,Reddy TB,Pati A,Ivanova NN,Markowitz VM,Klenk HP,Woyke T,Fasseas C,Kyrpides NC,Zervakis GI

更新日期：2015-08-13 00:00:00

abstract：:Leptonema illini Hovind-Hougen 1979 is the type species of the genus Leptonema, family Leptospiraceae, phylum Spirochaetes. Organisms of this family have a Gram-negative-like cell envelope consisting of a cytoplasmic membrane and an outer membrane. The peptidoglycan layer is associated with the cytoplasmic rather than...

journal_title：Standards in genomic sciences

authors： Huntemann M,Stackebrandt E,Held B,Nolan M,Lucas S,Hammon N,Deshpande S,Cheng JF,Tapia R,Goodwin LA,Pitluck S,Liolios K,Pagani I,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Land M,Rohde M,Gron

更新日期：2013-05-25 00:00:00

abstract：:Strain T5(T) is the type strain of the species Phaeobacter inhibens Martens et al. 2006, a secondary metabolite producing bacterium affiliated to the Roseobacter clade. Strain T5(T) was isolated from a water sample taken at the German Wadden Sea, southern North Sea. Here we describe the complete genome sequence and an...

journal_title：Standards in genomic sciences

authors： Dogs M,Voget S,Teshima H,Petersen J,Davenport K,Dalingault H,Chen A,Pati A,Ivanova N,Goodwin LA,Chain P,Detter JC,Standfest S,Rohde M,Gronow S,Kyrpides NC,Woyke T,Simon M,Klenk HP,Göker M,Brinkhoff T

更新日期：2013-12-15 00:00:00

abstract：:Mesorhizobium loti strain NZP2037 was isolated in 1961 in Palmerston North, New Zealand from a Lotus divaricatus root nodule. Compared to most other M. loti strains, it has a broad host range and is one of very few M. loti strains able to form effective nodules on the agriculturally important legume Lotus pedunculatus...

journal_title：Standards in genomic sciences

authors： Kelly S,Sullivan J,Ronson C,Tian R,Bräu L,Davenport K,Daligault H,Erkkila T,Goodwin L,Gu W,Munk C,Teshima H,Xu Y,Chain P,Woyke T,Liolios K,Pati A,Mavromatis K,Markowitz V,Ivanova N,Kyrpides N,Reeve W

更新日期：2014-12-08 00:00:00

abstract：:This report details the outcome of the 13(th) Meeting of the Genomic Standards Consortium. The three-day conference was held at the Kingkey Palace Hotel, Shenzhen, China, on March 5-7, 2012, and was hosted by the Beijing Genomics Institute. The meeting, titled From Genomes to Interactions to Communities to Models, hig...

journal_title：Standards in genomic sciences

authors： Gilbert JA,Bao Y,Wang H,Sansone SA,Edmunds SC,Morrison N,Meyer F,Schriml LM,Davies N,Sterk P,Wilkening J,Garrity GM,Field D,Robbins R,Smith DP,Mizrachi I,Moreau C

更新日期：2012-05-25 00:00:00

abstract：:A lytic bacteriophage RG-2014 infecting a biofilm forming multidrug resistant bacterium Delftia tsuruhatensis strain ARB-1 as its host was isolated from a full-scale municipal wastewater treatment plant. Lytic phage RG-2014 was isolated for developing phage based therapeutic approaches against Delftia tsuruhatensis st...

journal_title：Standards in genomic sciences

authors： Bhattacharjee AS,Motlagh AM,Gilcrease EB,Islam MI,Casjens SR,Goel R

更新日期：2017-12-18 00:00:00

abstract：:Streptobacillus moniliformis Levaditi et al. 1925 is the type and sole species of the genus Streptobacillus, and is of phylogenetic interest because of its isolated location in the sparsely populated and neither taxonomically nor genomically much accessed family 'Leptotrichiaceae' within the phylum Fusobacteria. The '...

journal_title：Standards in genomic sciences

authors： Nolan M,Gronow S,Lapidus A,Ivanova N,Copeland A,Lucas S,Del Rio TG,Chen F,Tice H,Pitluck S,Cheng JF,Sims D,Meincke L,Bruce D,Goodwin L,Brettin T,Han C,Detter JC,Ovchinikova G,Pati A,Mavromatis K,Mikhailova N,C

更新日期：2009-12-30 00:00:00

abstract：:Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because...

journal_title：Standards in genomic sciences

authors： Anderson IJ,DasSarma P,Lucas S,Copeland A,Lapidus A,Del Rio TG,Tice H,Dalin E,Bruce DC,Goodwin L,Pitluck S,Sims D,Brettin TS,Detter JC,Han CS,Larimer F,Hauser L,Land M,Ivanova N,Richardson P,Cavicchioli R,DasSar

更新日期：2016-09-10 00:00:00

abstract：:Alistipes obesi sp. nov. strain ph8(T) is the type strain of A. obesi, a new species within the genus Alistipes. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. A. obesi is an obligately anaerobic rod. Here we describe the features of...

journal_title：Standards in genomic sciences

authors： Hugon P,Ramasamy D,Lagier JC,Rivet R,Couderc C,Raoult D,Fournier PE

更新日期：2013-02-25 00:00:00

abstract：:Ensifer (Sinorhizobium) medicae is an effective nitrogen fixing microsymbiont of a diverse range of annual Medicago (medic) species. Strain WSM419 is an aerobic, motile, non-spore forming, Gram-negative rod isolated from a M. murex root nodule collected in Sardinia, Italy in 1981. WSM419 was manufactured commercially ...

journal_title：Standards in genomic sciences

authors： Reeve W,Chain P,O'Hara G,Ardley J,Nandesena K,Bräu L,Tiwari R,Malfatti S,Kiss H,Lapidus A,Copeland A,Nolan M,Land M,Hauser L,Chang YJ,Ivanova N,Mavromatis K,Markowitz V,Kyrpides N,Gollagher M,Yates R,Dilworth M

更新日期：2010-01-28 00:00:00

abstract：:Strain M27-SA2 was isolated from the deep-sea salt-saturated anoxic lake Medee, which represents one of the most hostile extreme environments on our planet. On the basis of physiological studies and phylogenetic positioning this extremely halophilic euryarchaeon belongs to a novel genus 'Halanaeroarchaeum' within the ...

journal_title：Standards in genomic sciences

authors： Messina E,Sorokin DY,Kublanov IV,Toshchakov S,Lopatina A,Arcadi E,Smedile F,La Spada G,La Cono V,Yakimov MM

更新日期：2016-05-13 00:00:00

abstract：:Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. H. utahensis is a free-living, motile, rod shaped to pleomorphic, Gram-negative archaeon, wh...

journal_title：Standards in genomic sciences

authors： Anderson I,Tindall BJ,Pomrenke H,Göker M,Lapidus A,Nolan M,Copeland A,Glavina Del Rio T,Chen F,Tice H,Cheng JF,Lucas S,Chertkov O,Bruce D,Brettin T,Detter JC,Han C,Goodwin L,Land M,Hauser L,Chang YJ,Jeffries CD

更新日期：2009-11-22 00:00:00

abstract：:Enterobacter mori strain 5-4 is a Gram-negative, motile, rod shaped, and facultatively anaerobic bacterium, which was isolated from a mixture of formation water (also known as oil-reservior water) and crude-oil in Karamay oilfield, China. To date, there is only one E. mori genome has been sequenced and very little kno...

journal_title：Standards in genomic sciences

authors： Zhang F,Su S,Yu G,Zheng B,Shu F,Wang Z,Xiang T,Dong H,Zhang Z,Hou D,She Y

更新日期：2015-02-27 00:00:00

abstract：:Spirosoma linguale Migula 1894 is the type species of the genus. S. linguale is a free-living and non-pathogenic organism, known for its peculiar ringlike and horseshoe-shaped cell morphology. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is only the th...

journal_title：Standards in genomic sciences

authors： Lail K,Sikorski J,Saunders E,Lapidus A,Glavina Del Rio T,Copeland A,Tice H,Cheng JF,Lucas S,Nolan M,Bruce D,Goodwin L,Pitluck S,Ivanova N,Mavromatis K,Ovchinnikova G,Pati A,Chen A,Palaniappan K,Land M,Hauser L,C

更新日期：2010-03-30 00:00:00

abstract：:Rhizobium leguminosarum bv. trifolii SRDI943 (strain syn. V2-2) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Trifolium michelianum Savi cv. Paradana that had been grown in soil collected from a mixed pasture in Victoria, Australia. This isolate was found to have a...

journal_title：Standards in genomic sciences

authors： Reeve W,Drew E,Ballard R,Melino V,Tian R,De Meyer S,Brau L,Ninawi M,Daligault H,Davenport K,Erkkila T,Goodwin L,Gu W,Munk C,Teshima H,Xu Y,Chain P,Kyrpides N

更新日期：2013-12-15 00:00:00

abstract：:Natrinema altunense strain AJ2T, a halophilic archaeal strain, was isolated from a high-altitude (3884 m) salt lake in Xinjiang, China. This strain requires at least 1.7 M NaCl to grow and can grow anaerobically in the presence of nitrate. To understand the genetics underlying its extreme phenotype, we de novo assembl...

journal_title：Standards in genomic sciences

authors： Cheng H,Huo YY,Hu J,Xu XW,Wu M

更新日期：2017-03-01 00:00:00

abstract：:Escherichia coli is the most abundant facultative anaerobic bacteria in the gastro-intestinal tract of mammals but can be responsible for intestinal infection due to acquisition of virulence factors. Genomes of pathogenic E. coli strains are widely described whereas those of bovine commensal E. coli strains are very s...

journal_title：Standards in genomic sciences

authors： Segura A,Auffret P,Klopp C,Bertin Y,Forano E

更新日期：2017-10-10 00:00:00

abstract：:The family Hyphomonadaceae within the Alphaproteobacteria is largely comprised of bacteria isolated from marine environments with striking morphologies and an unusual mode of cell growth. Here, we report the complete genome sequence Hirschia baltica, which is only the second a member of the Hyphomonadaceae with a publ...

journal_title：Standards in genomic sciences

authors： Chertkov O,Brown PJ,Kysela DT,de Pedro MA,Lucas S,Copeland A,Lapidus A,Del Rio TG,Tice H,Bruce D,Goodwin L,Pitluck S,Detter JC,Han C,Larimer F,Chang YJ,Jeffries CD,Land M,Hauser L,Kyrpides NC,Ivanova N,Ovchinnik

更新日期：2011-12-31 00:00:00

abstract：:Thermosediminibacter oceani (Lee et al. 2006) is the type species of the genus Thermosediminibacter in the family Thermoanaerobacteraceae. The anaerobic, barophilic, chemoorganotrophic thermophile is characterized by straight to curved Gram-negative rods. The strain described in this study was isolated from a core sam...

journal_title：Standards in genomic sciences

authors： Pitluck S,Yasawong M,Munk C,Nolan M,Lapidus A,Lucas S,Glavina Del Rio T,Tice H,Cheng JF,Bruce D,Detter C,Tapia R,Han C,Goodwin L,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Land M,

更新日期：2010-09-28 00:00:00

abstract：:Strain HIMB11 is a planktonic marine bacterium isolated from coastal seawater in Kaneohe Bay, Oahu, Hawaii belonging to the ubiquitous and versatile Roseobacter clade of the alphaproteobacterial family Rhodobacteraceae. Here we describe the preliminary characteristics of strain HIMB11, including annotation of the draf...

journal_title：Standards in genomic sciences

authors： Durham BP,Grote J,Whittaker KA,Bender SJ,Luo H,Grim SL,Brown JM,Casey JR,Dron A,Florez-Leiva L,Krupke A,Luria CM,Mine AH,Nigro OD,Pather S,Talarmin A,Wear EK,Weber TS,Wilson JM,Church MJ,DeLong EF,Karl DM,Stew

更新日期：2014-03-15 00:00:00

abstract：:Candidatus Arsenophonus lipopteni (Enterobacteriaceae, Gammaproteobacteria) is an obligate intracellular symbiont of the blood feeding deer ked, Lipoptena cervi (Diptera: Hippoboscidae). The bacteria reside in specialized cells derived from host gut epithelia (bacteriocytes) forming a compact symbiotic organ (bacterio...

journal_title：Standards in genomic sciences

authors： Nováková E,Hypša V,Nguyen P,Husník F,Darby AC

更新日期：2016-09-17 00:00:00

abstract：:Halomonas zhanjiangensis Chen et al. 2009 is a member of the genus Halomonas, family Halomonadaceae, class Gammaproteobacteria. Representatives of the genus Halomonas are a group of halophilic bacteria often isolated from salty environments. The type strain H. zhanjiangensis JSM 078169(T) was isolated from a sea urchi...

journal_title：Standards in genomic sciences

authors： Zhou Y,Li R,Gao XY,Lapidus A,Han J,Haynes M,Lobos E,Huntemann M,Pati A,Ivanova NN,Rohde M,Mavromatis K,Tindall BJ,Markowitz V,Woyke T,Klenk HP,Kyrpides NC,Li WJ

更新日期：2014-04-11 00:00:00