Transcriptional and epigenetic control of T helper cell specification: molecular mechanisms underlying commitment and plasticity.

Abstract:

:T helper cell differentiation occurs in the context of the extracellular cytokine milieu evoked by diverse microbes and other pathogenic stimuli along with T cell receptor stimulation. The culmination of these signals results in specification of T helper lineages, which occurs through the combinatorial action of multiple transcription factors that establish distinctive transcriptomes. In this manner, inducible, but constitutively active, master regulators work in conjunction with factors such as the signal transducer and activator of transcriptions (STATs) that sense the extracellular environment. The acquisition of a distinctive transcriptome also depends on chromatin modifications that impact key cis elements as well as the changes in global genomic organization. Thus, signal transduction and epigenetics are linked in these processes of differentiation. In this review, recent advances in understanding T helper lineage specification and deciphering the action of transcription factors are summarized with emphasis on comprehensive views of the dynamic T cell epigenome.

journal_name

Annu Rev Immunol

authors

Kanno Y,Vahedi G,Hirahara K,Singleton K,O'Shea JJ

doi

10.1146/annurev-immunol-020711-075058

subject

Has Abstract

pub_date

2012-01-01 00:00:00

pages

707-31

eissn

0732-0582

issn

1545-3278

journal_volume

30

pub_type

杂志文章,评审
  • NF-kappa B and Rel proteins: evolutionarily conserved mediators of immune responses.

    abstract::The transcription factor NF-kappa B, more than a decade after its discovery, remains an exciting and active area of study. The involvement of NF-kappa B in the expression of numerous cytokines and adhesion molecules has supported its role as an evolutionarily conserved coordinating element in the organism's response t...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.16.1.225

    authors: Ghosh S,May MJ,Kopp EB

    更新日期:1998-01-01 00:00:00

  • Producing nature's gene-chips: the generation of peptides for display by MHC class I molecules.

    abstract::Gene-chips contain thousands of nucleotide sequences that allow simultaneous analysis of the complex mixture of RNAs transcribed in cells. Like these gene-chips, major histocompatibility complex (MHC) class I molecules display a large array of peptides on the cell surface for probing by the CD8(+) T cell repertoire. T...

    journal_title:Annual review of immunology

    pub_type: 杂志文章

    doi:10.1146/annurev.immunol.20.100301.064819

    authors: Shastri N,Schwab S,Serwold T

    更新日期:2002-01-01 00:00:00

  • Transcriptional control of early T and B cell developmental choices.

    abstract::T and B cells share a common somatic gene rearrangement mechanism for assembling the genes that code for their antigen receptors; they also have developmental pathways with many parallels. Shared usage of basic helix-loop-helix E proteins as transcriptional drivers underlies these common features. However, the transcr...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev-immunol-032712-100024

    authors: Rothenberg EV

    更新日期:2014-01-01 00:00:00

  • Hypoxia and Innate Immunity: Keeping Up with the HIFsters.

    abstract::Recent years have witnessed an emergence of interest in understanding metabolic changes associated with immune responses, termed immunometabolism. As oxygen is central to all aerobic metabolism, hypoxia is now recognized to contribute fundamentally to inflammatory and immune responses. Studies from a number of groups ...

    journal_title:Annual review of immunology

    pub_type: 杂志文章

    doi:10.1146/annurev-immunol-100819-121537

    authors: Colgan SP,Furuta GT,Taylor CT

    更新日期:2020-04-26 00:00:00

  • Microbiota-mediated inflammation and antimicrobial defense in the intestine.

    abstract::The diverse microbial populations constituting the intestinal microbiota promote immune development and differentiation, but because of their complex metabolic requirements and the consequent difficulty culturing them, they remained, until recently, largely uncharacterized and mysterious. In the last decade, deep nucl...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev-immunol-032713-120238

    authors: Caballero S,Pamer EG

    更新日期:2015-01-01 00:00:00

  • The role of chemokine receptors in primary, effector, and memory immune responses.

    abstract::The immune system is composed of single cells, and its function is entirely dependent on the capacity of these cells to traffic, localize within tissues, and interact with each other in a precisely coordinated fashion. There is growing evidence that the large families of chemokines and chemokine receptors provide a fl...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.18.1.593

    authors: Sallusto F,Mackay CR,Lanzavecchia A

    更新日期:2000-01-01 00:00:00

  • Population biology of HIV-1 infection: viral and CD4+ T cell demographics and dynamics in lymphatic tissues.

    abstract::Human immunodeficiency virus-1 (HIV-1) is usually transmitted through sexual contact and in the very early stages of infection establishes a persistent infection in lymphatic tissues (LT). Virus is produced and stored at this site in a dynamic process that slowly depletes the immune system of CD4+ T cells, setting the...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.17.1.625

    authors: Haase AT

    更新日期:1999-01-01 00:00:00

  • Cellular basis of skin allograft rejection: an in vivo model of immune-mediated tissue destruction.

    abstract::Rejection of transplanted tissue allografts results from T-cell recognition of histocompatibility antigens expressed by cells of the donor graft. This review focuses on the phenotype, specificity, and function of the T cells mediating rejection responses against skin allografts, and on the immune mechanisms by which h...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.10.040192.002001

    authors: Rosenberg AS,Singer A

    更新日期:1992-01-01 00:00:00

  • Interleukin-10 and related cytokines and receptors.

    abstract::The Class 2 alpha-helical cytokines consist of interleukin-10 (IL-10), IL-19, IL-20, IL-22, IL-24 (Mda-7), and IL-26, interferons (IFN-alpha, -beta, -epsilon, -kappa, -omega, -delta, -tau, and -gamma) and interferon-like molecules (limitin, IL-28A, IL-28B, and IL-29). The interaction of these cytokines with their spec...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.22.012703.104622

    authors: Pestka S,Krause CD,Sarkar D,Walter MR,Shi Y,Fisher PB

    更新日期:2004-01-01 00:00:00

  • Discovering the role of the major histocompatibility complex in the immune response.

    abstract::The discovery that genes in the major histocompatibility complex (MHC) play an important role in the immune response depended on the chance interaction of several unrelated events. The first, and most important, was the decision by Michael Sela to synthesize a series of branched, multichain, synthetic polypeptides bas...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.18.1.1

    authors: McDevitt HO

    更新日期:2000-01-01 00:00:00

  • Regulation and function of NF-kappaB transcription factors in the immune system.

    abstract::The mammalian Rel/NF-kappaB family of transcription factors, including RelA, c-Rel, RelB, NF-kappaB1 (p50 and its precursor p105), and NF-kappaB2 (p52 and its precursor p100), plays a central role in the immune system by regulating several processes ranging from the development and survival of lymphocytes and lymphoid...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.021908.132641

    authors: Vallabhapurapu S,Karin M

    更新日期:2009-01-01 00:00:00

  • Peptides naturally presented by MHC class I molecules.

    abstract::MHC class I molecules are peptide receptors of stringent specificity which however still allow millions of different ligands. This is achieved by the following specificity characteristics summarized as allele specific peptide motifs: Peptides are of defined length, depending on the class I allele (either 8 or 9 residu...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.11.040193.001241

    authors: Rammensee HG,Falk K,Rötzschke O

    更新日期:1993-01-01 00:00:00

  • Induction of Th1 and Th2 CD4+ T cell responses: the alternative approaches.

    abstract::T helper lymphocytes can be divided into two distinct subsets of effector cells based on their functional capabilities and the profile of cytokines they produce. The Th1 subset of CD4+ T cells secretes cytokines usually associated with inflammation, such as IFN-gamma and TNF and induces cell-mediated immune responses....

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.15.1.297

    authors: Constant SL,Bottomly K

    更新日期:1997-01-01 00:00:00

  • Regulation of T cell fate by Notch.

    abstract::The transmembrane receptor Notch participates in diverse cell fate decisions throughout embryonic development. Notch receptors and their ligands are expressed in the mammalian thymus, raising the possibility that Notch could regulate T cell fate decisions. Expression of a constitutively activated form of Notch in deve...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.17.1.283

    authors: Robey E

    更新日期:1999-01-01 00:00:00

  • The inflammasomes: guardians of the body.

    abstract::The innate immune system relies on its capacity to rapidly detect invading pathogenic microbes as foreign and to eliminate them. The discovery of Toll-like receptors (TLRs) provided a class of membrane receptors that sense extracellular microbes and trigger antipathogen signaling cascades. More recently, intracellular...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.021908.132715

    authors: Martinon F,Mayor A,Tschopp J

    更新日期:2009-01-01 00:00:00

  • A life of adventure in immunobiology.

    abstract::This article outlines my early start in medicine, a late start in immunology research, and my efforts to integrate the two activities. I first describe some of the background information, excitement, and implications of the recognition of T and B cells as separate but functionally intertwined arms of the adaptive immu...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev-immunol-030409-101248

    authors: Cooper MD

    更新日期:2010-01-01 00:00:00

  • Natural suppressor (NS) cells, neonatal tolerance, and total lymphoid irradiation: exploring obscure relationships.

    abstract::Although several laboratories have shown that the appearance of naturally occurring suppressor cells in the spleens of neonatal or irradiated mice is temporarily related to the ease of induction of tolerance, the characteristics of these cells and their regulatory functions have been poorly understood until recently. ...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.02.040184.001251

    authors: Strober S

    更新日期:1984-01-01 00:00:00

  • Tolerance of infections.

    abstract::A host has two methods to defend against pathogens: It can clear the pathogens or reduce their impact on health in other ways. The first, resistance, is well studied. Study of the second, which ecologists call tolerance, is in its infancy. Tolerance measures the dose response curve of a host's health in reaction to a ...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev-immunol-020711-075030

    authors: Ayres JS,Schneider DS

    更新日期:2012-01-01 00:00:00

  • Cross-presentation, dendritic cells, tolerance and immunity.

    abstract::This review examines the role of cross-presentation in tolerance and immunity. We discuss (a) the antigenic requirements for cross-presentation, (b) the phenotype of the antigen presenting cell (APC), (c) the cellular interactions and molecular signals involved in cross-priming, and (d) the factors that direct the imm...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.19.1.47

    authors: Heath WR,Carbone FR

    更新日期:2001-01-01 00:00:00

  • Mast Cells in Inflammation and Disease: Recent Progress and Ongoing Concerns.

    abstract::Mast cells have existed long before the development of adaptive immunity, although they have been given different names. Thus, in the marine urochordate Styela plicata, they have been designated as test cells. However, based on their morphological characteristics (including prominent cytoplasmic granules) and mediator...

    journal_title:Annual review of immunology

    pub_type: 杂志文章

    doi:10.1146/annurev-immunol-071719-094903

    authors: Galli SJ,Gaudenzio N,Tsai M

    更新日期:2020-04-26 00:00:00

  • Molecular interactions mediating T cell antigen recognition.

    abstract::Over the past decade, key protein interactions contributing to T cell antigen recognition have been characterized in molecular detail. These have included interactions involving the T cell antigen receptor (TCR) itself, its coreceptors CD4 and CD8, the accessory molecule CD2, and the costimulatory receptors CD28 and C...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.21.120601.141036

    authors: van der Merwe PA,Davis SJ

    更新日期:2003-01-01 00:00:00

  • The specificity and regulation of T-cell responsiveness to allergens.

    abstract::CD4+ T lymphocytes initiate and regulate both the specific and nonspecific effector mechanisms of allergic immune responses. The definition of immunogenic components within allergens has allowed the specificity of the T-cell repertoire to be examined, and the refinement of their molecular structure is now facilitating...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.09.040191.000435

    authors: O'Hehir RE,Garman RD,Greenstein JL,Lamb JR

    更新日期:1991-01-01 00:00:00

  • The host defense of Drosophila melanogaster.

    abstract::To combat infection, the fruit fly Drosophila melanogaster relies on multiple innate defense reactions, many of which are shared with higher organisms. These reactions include the use of physical barriers together with local and systemic immune responses. First, epithelia, such as those beneath the cuticle, in the ali...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.25.022106.141615

    authors: Lemaitre B,Hoffmann J

    更新日期:2007-01-01 00:00:00

  • MHC class-I transgenic mice.

    abstract::The introduction of cloned genes into the germline of mice has been proven to be a powerful tool to investigate the role of the respective gene products within the immune system. Here we summarize the transgenic mouse models that have been established with major histocompatibility complex (MHC) class-I genes. Foreign ...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.09.040191.001501

    authors: Arnold B,Hämmerling GJ

    更新日期:1991-01-01 00:00:00

  • CD45: a critical regulator of signaling thresholds in immune cells.

    abstract::Regulation of tyrosine phosphorylation is a critical control point for integration of environmental signals into cellular responses. This regulation is mediated by the reciprocal actions of protein tyrosine kinases and phosphatases. CD45, the first and prototypic receptor-like protein tyrosine phosphatase, is expresse...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.21.120601.140946

    authors: Hermiston ML,Xu Z,Weiss A

    更新日期:2003-01-01 00:00:00

  • [gamma][delta] cells: a right time and a right place for a conserved third way of protection.

    abstract::The tripartite subdivision of lymphocytes into B cells, alphabeta T cells, and gammadelta cells has been conserved seemingly since the emergence of jawed vertebrates, more than 450 million years ago. Yet, while we understand much about B cells and alphabeta T cells, we lack a compelling explanation for the evolutionar...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.18.1.975

    authors: Hayday AC

    更新日期:2000-01-01 00:00:00

  • Function and activation of NF-kappa B in the immune system.

    abstract::NF-kappa B is a ubiquitous transcription factor. Nevertheless, its properties seem to be most extensively exploited in cells of the immune system. Among these properties are NF-kappa B's rapid posttranslational activation in response to many pathogenic signals, its direct participation in cytoplasmic/nuclear signaling...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.12.040194.001041

    authors: Baeuerle PA,Henkel T

    更新日期:1994-01-01 00:00:00

  • Structural biology of shared cytokine receptors.

    abstract::Recent structural information for complexes of cytokine receptor ectodomains bound to their ligands has significantly expanded our understanding of the macromolecular topology and ligand recognition mechanisms used by our three principal shared cytokine signaling receptors-gp130, gamma(c), and beta(c). The gp130 famil...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.24.021605.090616

    authors: Wang X,Lupardus P,Laporte SL,Garcia KC

    更新日期:2009-01-01 00:00:00

  • The coming of age of the immunoglobulin J chain.

    abstract::During the last decade the immunoglobulin J chain has indeed come of age. The amino-acid sequence has been determined for the mouse and human polypeptides, and the data obtained have established the uniqueness of the primary structure and its high degree of conservation in vertebrates. The biosynthesis of J chain has ...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.03.040185.002233

    authors: Koshland ME

    更新日期:1985-01-01 00:00:00

  • Properties of the novel proinflammatory supergene "intercrine" cytokine family.

    abstract::A family consisting of at least ten distinct novel 8-10 kd cytokines has been identified over the past 12 years. These cytokines exhibit from 20 to 45% homology in amino acid sequence, are probably all basic heparin-binding polypeptides, and have proinflammatory and reparative activities. The cDNA for these cytokines ...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.09.040191.003153

    authors: Oppenheim JJ,Zachariae CO,Mukaida N,Matsushima K

    更新日期:1991-01-01 00:00:00