Phylodynamic analysis of a viral infection network.

abstract：:We studied the resident (16S rDNA) and the active (16S rRNA) members of soil archaeal and bacterial communities during rice plant development by sampling three growth stages (vegetative, reproductive and maturity) under field conditions. Additionally, the microbial community was investigated in two non-flooded fields ...

journal_title：Frontiers in microbiology

authors： Breidenbach B,Conrad R

更新日期：2015-01-08 00:00:00

abstract：:Developments in industrial applications inevitably accelerate the discharge of enormous substances into the environment, whereas multi-component mixtures commonly cause joint toxicity which is distinct from the simple sum of independent effect. Thus, ecotoxicological assessment, by luminescent bioassays has recently b...

journal_title：Frontiers in microbiology

authors： Wang D,Wang S,Bai L,Nasir MS,Li S,Yan W

更新日期：2020-07-31 00:00:00

abstract：:The bacterial catabolism of aromatic compounds has considerable promise to convert lignin depolymerization products to commercial chemicals. Alkylphenols are a key class of depolymerization products whose catabolism is not well-elucidated. We isolated Rhodococcus rhodochrous EP4 on 4-ethylphenol and applied genomic an...

journal_title：Frontiers in microbiology

authors： Levy-Booth DJ,Fetherolf MM,Stewart GR,Liu J,Eltis LD,Mohn WW

更新日期：2019-08-20 00:00:00

abstract：:This study presents three novel integrons In1394, In1395, and In1443, three novel unit transposons Tn6392, Tn6393, and Tn6403, one novel conjugative element (ICE) Tn6413, and the first sequenced IncP-7 resistance plasmid p1160-VIM from clinical Pseudomonas aeruginosa. Detailed sequence comparison of p1160-VIM (carryin...

journal_title：Frontiers in microbiology

authors： Zeng L,Zhan Z,Hu L,Jiang X,Zhang Y,Feng J,Gao B,Zhao Y,Yang W,Yang H,Yin Z,Zhou D

更新日期：2019-02-26 00:00:00

abstract：:Volvariella volvacea is a typical edible Basidiomycete with a high-temperature tolerance. It has a strong fibrinolysis capability and consumes abundant agricultural wastes. In agricultural cultivation, mycelial subculturing has been adopted, leading to serious strain degeneration. In this study, continuous mycelial su...

journal_title：Frontiers in microbiology

authors： Chen X,Zhang Z,Liu X,Cui B,Miao W,Cheng W,Zhao F

更新日期：2019-09-03 00:00:00

abstract：:In this article we compare the efficacy of different pharmacological agents (ranitidine, and omeprazole) to support phage transit from stomach to distal portions of the gastrointestinal tract in rats. We show that a temporal modification of environment in the animal stomach may protect Twort-like therapeutic antistaph...

journal_title：Frontiers in microbiology

authors： Międzybrodzki R,Kłak M,Jończyk-Matysiak E,Bubak B,Wójcik A,Kaszowska M,Weber-Dąbrowska B,Łobocka M,Górski A

更新日期：2017-03-23 00:00:00

abstract：:Reports in the literature suggest that bacteria exposed to lethal doses of ionizing radiation, i.e., electron beams, are unable to replicate yet they remain metabolically active. To investigate this phenomenon further, we electron beam irradiated Escherichia coli cells to a lethal dose and measured their membrane inte...

journal_title：Frontiers in microbiology

authors： Hieke AC,Pillai SD

更新日期：2018-09-10 00:00:00

abstract：:Carbapenemases are bacterial enzymes that hydrolyze carbapenems, a group of last-resort β-lactam antibiotics used for treatment of severe bacterial infections. They belong to three β-lactamase classes based amino acid sequence (A, B, and D). The aim of this study was to elucidate occurrence, diversity and functionalit...

journal_title：Frontiers in microbiology

authors： Gudeta DD,Bortolaia V,Pollini S,Docquier JD,Rossolini GM,Amos GC,Wellington EM,Guardabassi L

更新日期：2016-12-26 00:00:00

abstract：:Plant growth and productivity depend on the interactions of the plant with the associated rhizosphere microbes. Rhizosphere protists play a significant role in this respect: considerable efforts have been made in the past to reveal the impact of protist-bacteria interactions on the remobilization of essential nutrient...

journal_title：Frontiers in microbiology

authors： Kuppardt A,Fester T,Härtig C,Chatzinotas A

更新日期：2018-05-03 00:00:00

abstract：:Vachellia karroo (formerly Acacia karroo) is a wide-spread legume species indigenous to southern Africa. Little is known regarding the identity or diversity of rhizobia that associate with this plant in its native range in South Africa. The aims of this study were therefore: (i) to gather a collection of rhizobia asso...

journal_title：Frontiers in microbiology

authors： Beukes CW,Boshoff FS,Phalane FL,Hassen AI,le Roux MM,Stȩpkowski T,Venter SN,Steenkamp ET

更新日期：2019-06-04 00:00:00

abstract：:Iron is an essential but, in excess, toxic nutrient. Therefore, fungi evolved fine-tuned mechanisms for uptake and storage of iron, such as the production of siderophores (low-molecular mass iron-specific chelators). In Aspergillus fumigatus, iron starvation causes extensive transcriptional remodeling involving two ce...

journal_title：Frontiers in microbiology

authors： Haas H

更新日期：2012-02-06 00:00:00

abstract：:HIV-1 is an RNA enveloped virus that preferentially infects CD4(+) T lymphocytes and also macrophages. In CD4(+) T cells, HIV-1 mainly buds from the host cell plasma membrane. The viral Gag polyprotein targets the plasma membrane and is the orchestrator of the HIV assembly as its expression is sufficient to promote th...

journal_title：Frontiers in microbiology

authors： Mariani C,Desdouits M,Favard C,Benaroch P,Muriaux DM

更新日期：2014-06-25 00:00:00

abstract：:Photo-receptors are widely present in both prokaryotic and eukaryotic cells, which serves as the foundation of tuning cell behaviors with light. While practices in eukaryotic cells have been relatively established, trials in bacterial cells have only been emerging in the past few years. A number of light sensors have ...

journal_title：Frontiers in microbiology

authors： Liu Z,Zhang J,Jin J,Geng Z,Qi Q,Liang Q

更新日期：2018-11-08 00:00:00

abstract：:Lipopolysaccharide-deficient mutants of smooth Brucella species (rough mutants) have been shown to arise spontaneously in culture. However, in situ analysis of Brucella infected macrophages using antibody directed against O-polysaccharide suggested a loss of reactivity of Brucella consistent with the appearance of rou...

journal_title：Frontiers in microbiology

authors： Turse JE,Pei J,Ficht TA

更新日期：2011-03-23 00:00:00

abstract：:Severe fever with thrombocytopenia syndrome (SFTS) is a tick-borne viral disease affecting hundreds of people in China each year. To better understand the epidemiological characteristics and environmental risk factors associated with the incidence of SFTS in Hubei Province, China, we conducted a retrospective epidemio...

journal_title：Frontiers in microbiology

authors： Wang T,Li XL,Liu M,Song XJ,Zhang H,Wang YB,Tian BP,Xing XS,Li SY

更新日期：2017-03-08 00:00:00

abstract：:Chrysene is a high molecular weight (HMW), polycyclic aromatic hydrocarbon (PAH) known for its recalcitrance and carcinogenic properties and sparsely soluble (0.003 mg/L) in aqueous medium. Due to these refractory properties, bioavailability of chrysene is very low and therefore is persistence in the environment escap...

journal_title：Frontiers in microbiology

authors： Vaidya S,Devpura N,Jain K,Madamwar D

更新日期：2018-06-26 00:00:00

abstract：:Within the subarctic climate of Clinton Creek, Yukon, Canada, lies an abandoned and flooded open-pit asbestos mine that harbors rapidly growing microbialites. To understand their formation we completed a metagenomic community profile of the microbialites and their surrounding sediments. Assembled metagenomic data reve...

journal_title：Frontiers in microbiology

authors： White RA 3rd,Power IM,Dipple GM,Southam G,Suttle CA

更新日期：2015-09-23 00:00:00

abstract：:Clonostachys rosea is a biological control agent against Fusarium graminearum in small grain cereals and maize. Infections with F. graminearum do not only reduce the yield but, due to the production of mycotoxins, also affect the entire value chain of food and feed. In addition, production of other secondary metabolit...

journal_title：Frontiers in microbiology

authors： Gimeno A,Sohlberg E,Pakula T,Limnell J,Keller B,Laitila A,Vogelgsang S

更新日期：2019-07-16 00:00:00

abstract：:A novel cyclic peptide compound, KK-1, was originally isolated from the plant-pathogenic fungus Curvularia clavata. It consists of 10 amino acid residues, including five N-methylated amino acid residues, and has potent antifungal activity. Recently, the genome-sequencing analysis of C. clavata was completed, and the b...

journal_title：Frontiers in microbiology

authors： Yoshimi A,Yamaguchi S,Fujioka T,Kawai K,Gomi K,Machida M,Abe K

更新日期：2018-04-09 00:00:00

abstract：:Managed aquifer recharge (MAR) offers a collection of water storage and storage options that have been used by resource managers to mitigate the reduced availability of fresh water. One of these technologies is aquifer storage and recovery (ASR), where surface water is treated then recharged into a storage zone within...

journal_title：Frontiers in microbiology

authors： Lisle JT

更新日期：2020-07-29 00:00:00

abstract：:Special-flavor Baijiu is a unique Baijiu in Jiangxi Province, China, whose uniqueness mainly depends on the unique production process of special-flavor Baijiu Daqu. However, the microbial structure and physicochemical indices of different parts of the special-flavor Baijiu Daqu are still unknown. This greatly reduces ...

journal_title：Frontiers in microbiology

authors： Chen Y,Li K,Liu T,Li R,Fu G,Wan Y,Zheng F

更新日期：2021-01-14 00:00:00

abstract：:The human T-lymphotropic virus (HTLV) is part of the group of retroviruses that share similar routes of transmission to the human immunodeficiency virus (HIV). Coinfection of these viruses can affect the clinical course of both infections, and reports have shown a quicker progression to AIDS and the development of HIV...

journal_title：Frontiers in microbiology

authors： Alencar SP,Souza MC,Fonseca RRS,Menezes CR,Azevedo VN,Ribeiro ALR,Lima SS,Laurentino RV,Barbosa MDAAP,Freitas FB,Oliveira-Filho AB,Machado LFA

更新日期：2020-10-22 00:00:00

abstract：:Kaposi's sarcoma-associated herpesvirus (KSHV), also called human herpesvirus 8, belongs to the gamma herpesviruses and is the etiological agent of Kaposi's sarcoma, primary effusion lymphoma, and some types of multicentric Castleman's disease. In vivo, KSHV mainly infects B cells and endothelial cells. The interactio...

journal_title：Frontiers in microbiology

authors： Liang D,Lin X,Lan K

更新日期：2012-01-11 00:00:00

abstract：:Root nodule symbiosis (RNS) is one of the most productive and economical systems for nitrogen fixation, and previous studies have shown that several nodule-specific C2H2-zinc finger proteins (ZFPs) play important roles in symbiosis establishment and nodule function. However, C2H2-ZFPs are the most widespread ZFPs in e...

journal_title：Frontiers in microbiology

authors： Yuan S,Li X,Li R,Wang L,Zhang C,Chen L,Hao Q,Zhang X,Chen H,Shan Z,Yang Z,Chen S,Qiu D,Ke D,Zhou X

更新日期：2018-02-06 00:00:00

abstract：:Arid and semi-arid regions comprise nearly one-fifth of the earth's terrestrial surface. However, the diversities and functions of their soil microbial communities are not well understood, despite microbial ecological importance in driving biogeochemical cycling. Here, we analyzed the geochemistry and microbial commun...

journal_title：Frontiers in microbiology

authors： Ren M,Zhang Z,Wang X,Zhou Z,Chen D,Zeng H,Zhao S,Chen L,Hu Y,Zhang C,Liang Y,She Q,Zhang Y,Peng N

更新日期：2018-03-09 00:00:00

abstract：:Phage therapy requires libraries of well-characterized phages. Here we describe the generation of phage libraries for three target species: Escherichia coli, Pseudomonas aeruginosa, and Enterobacter cloacae. The basic phage characteristics on the isolation host, sequence analysis, growth properties, and host range and...

journal_title：Frontiers in microbiology

authors： Gibson SB,Green SI,Liu CG,Salazar KC,Clark JR,Terwilliger AL,Kaplan HB,Maresso AW,Trautner BW,Ramig RF

更新日期：2019-11-12 00:00:00

abstract：:Dental caries and periodontitis are the most common oral disease of all age groups, affecting billions of people worldwide. These oral diseases are mostly associated with microbial biofilms in the oral cavity. Streptococcus gordonii, an early tooth colonizing bacterium and Candida albicans, an opportunistic pathogenic...

journal_title：Frontiers in microbiology

authors： Veerapandian R,Vediyappan G

更新日期：2019-10-11 00:00:00

abstract：:Our understanding of microbial natural environments combines in situ experimentation with studies of specific interactions in laboratory-based setups. The purpose of this work was to develop, build and demonstrate the use of a microbial culture chamber enabling both in situ and laboratory-based studies. The design use...

journal_title：Frontiers in microbiology

authors： Thøgersen MS,Melchiorsen J,Ingham C,Gram L

更新日期：2018-07-30 00:00:00

abstract：:The host range of a phage is determined primarily by phage-receptor interaction. Here, we profiled the host range of an RNA leviphage, PP7 that requires functional type IV pilus (TFP) in order to enter into its host bacterium, Pseudomonas aeruginosa. Out of 25 twitching-proficient P. aeruginosa strains, 4 with group I...

journal_title：Frontiers in microbiology

authors： Kim ES,Bae HW,Cho YH

更新日期：2018-02-16 00:00:00

abstract：:Toxin/antitoxin (TA) systems are present in most prokaryote genomes. Toxins are almost exclusively proteins that reduce metabolism (but do not cause cell death), and antitoxins are either RNA or proteins that counteract the toxin or the RNA that encodes it. Although TA systems clearly stabilize mobile genetic elements...

journal_title：Frontiers in microbiology

authors： Song S,Wood TK

更新日期：2020-08-13 00:00:00