Transcriptome analysis of primary monocytes shows global down-regulation of genetic networks in HIV viremic patients versus long-term non-progressors.

Abstract:

:Despite significant contributions of monocytes to HIV persistence, the genomic basis of HIV-infection of monocytes and its association with plasma viremia remain elusive. To understand HIV interactions with monocytes during disease progression, monocytic transcriptomes from long-term non-progressors (LTNP), HIV+ patients with viral load <1000, with viral load >1000, and seronegative controls were analyzed using Illumina microarray. Differentially expressed genes were identified (fold change >2; adjusted p<0.05) and GSEA between HIV+ groups demonstrated that the down-regulation of the pathways including Toll-like receptor (TLR) signaling, cytokine-cytokine receptor interaction, cell cycle and apoptosis was significantly associated with the viremic groups, whereas their up-regulation with the LTNP group. The down-regulation of TLR pathway in the viremic patients was exemplified by the decreased expression of TLR with the subsequent tuning down of MAPK, NF-κB, JAK-STAT, and IRF cascades. These data provide the first transcriptomic distinction between HIV+ progressors and LTNPs based on primary monocytes.

journal_name

Virology

journal_title

Virology

authors

Wu JQ,Sassé TR,Wolkenstein G,Conceicao V,Saksena MM,Soedjono M,Perera SS,Wang B,Dwyer DE,Saksena NK

doi

10.1016/j.virol.2012.10.026

subject

Has Abstract

pub_date

2013-01-20 00:00:00

pages

308-19

issue

2

eissn

0042-6822

issn

1096-0341

pii

S0042-6822(12)00534-X

journal_volume

435

pub_type

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