Abstract:
:Next generation sequencing techniques produce enormous data but its analysis and visualization remains a big challenge. To address this, we have developed Genome Annotator Light(GAL), a Docker based package for genome analysis and data visualization. GAL integrated several existing tools and in-house programs inside a Docker Container for systematic analysis and visualization of genomes through web browser. GAL takes varieties of input types ranging from raw Fasta files to fully annotated files, processes them through a standard annotation pipeline and visualizes on a web browser. Comparative genomic analysis is performed automatically within a given taxonomic class. GAL creates interactive genome browser with clickable genomic feature tracks; local BLAST-able database; query page, on-fly downstream data analysis using EMBOSS etc. Overall, GAL is an extremely convenient, portable and platform independent. Fully integrated web-resources can be easily created and deployed, e.g. www.eumicrobedb.org/cglab, for our in-house genomes. GAL is freely available at https://hub.docker.com/u/cglabiicb/.
journal_name
Genomicsjournal_title
Genomicsauthors
Panda A,Chaudhari NM,Tripathy Sdoi
10.1016/j.ygeno.2019.03.012subject
Has Abstractpub_date
2020-01-01 00:00:00pages
127-134issue
1eissn
0888-7543issn
1089-8646pii
S0888-7543(18)30700-6journal_volume
112pub_type
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