Genome Annotator Light (GAL): A Docker-based package for genome analysis and visualization.

Abstract:

:Next generation sequencing techniques produce enormous data but its analysis and visualization remains a big challenge. To address this, we have developed Genome Annotator Light(GAL), a Docker based package for genome analysis and data visualization. GAL integrated several existing tools and in-house programs inside a Docker Container for systematic analysis and visualization of genomes through web browser. GAL takes varieties of input types ranging from raw Fasta files to fully annotated files, processes them through a standard annotation pipeline and visualizes on a web browser. Comparative genomic analysis is performed automatically within a given taxonomic class. GAL creates interactive genome browser with clickable genomic feature tracks; local BLAST-able database; query page, on-fly downstream data analysis using EMBOSS etc. Overall, GAL is an extremely convenient, portable and platform independent. Fully integrated web-resources can be easily created and deployed, e.g. www.eumicrobedb.org/cglab, for our in-house genomes. GAL is freely available at https://hub.docker.com/u/cglabiicb/.

journal_name

Genomics

journal_title

Genomics

authors

Panda A,Chaudhari NM,Tripathy S

doi

10.1016/j.ygeno.2019.03.012

subject

Has Abstract

pub_date

2020-01-01 00:00:00

pages

127-134

issue

1

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(18)30700-6

journal_volume

112

pub_type

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