当前位置： SCI文献检索 > GENOMICS期刊下所有文献 > The mitochondrial genomes of three skippers: Insights into the evolution of the family Hesperiidae (Lepidoptera).

The mitochondrial genomes of three skippers: Insights into the evolution of the family Hesperiidae (Lepidoptera).

Abstract：

:We sequenced the mitogenomes of Astictopterus jama, Isoteinon lamprospilus and Notocrypta curvifascia to obtain further insight into the mitogenomic architecture evolution and performed phylogenetic reconstruction using 29 Hesperiidae mitogenome sequences. The complete mitogenome sequences of A. jama, I. lamprospilus and N. curvifascia are 15,430, 15,430 and 15,546 bp in size, respectively. All contain 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and an A + T-rich region. Nucleotide composition is A + T biased, and the majority of the protein-coding genes exhibit a negative AT-skew, which is reflected in the nucleotide composition, codon, and amino acid usage. The A + T-rich region is comprised of nonrepetitive sequences, including the motif ATAGA followed by a poly-T stretch, a microsatellite-like element next to the ATTTA motif, and a poly-A adjacent to tRNAs. Although most genes evolve under a strong purifying selection, the entire nad gene family (especially nad6) exhibits somewhat relaxed purifying selection, and atp8, evolving under a highly relaxed selection, is an outlier in the family Hesperiidae. Several different approaches relatively consistently indicated that nad6, atp8 and nad4 are comparatively fast-evolving genes in this family, which may have implications for future phylogenetic, population genetics and species diagnostics studies. For phylogenetic analyses of Hesperiidae, we tested a few datasets, and found that the one comprising all 37 genes produced the highest node support, indicating that the inclusion of RNAs improves the phylogenetic signal. Results indicate that subfamilies Euschemoninae, Heteropterinae, and Coeliadinae are monophyletic with strong nodal support, but Pyrginae and Eudaminae are paraphyletic. Finally, we confirm that A. jama and I. lamprospilus are close relatives.

journal_name

Genomics

journal_title

Genomics

authors

Ma L,Liu F,Chiba H,Yuan X

doi

10.1016/j.ygeno.2019.03.006

subject

Has Abstract

pub_date

2020-01-01 00:00:00

pages

432-441

issue

1

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(18)30480-4

journal_volume

112

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • Discovery and annotation of novel microRNAs in the porcine genome by using a semi-supervised transductive learning approach.

    abstract：:Despite the broad variety of available microRNA (miRNA) prediction tools, their application to the discovery and annotation of novel miRNA genes in domestic species is still limited. In this study we designed a comprehensive pipeline (eMIRNA) for miRNA identification in the yet poorly annotated porcine genome and demo...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2019.12.005

    authors： Mármol-Sánchez E,Cirera S,Quintanilla R,Pla A,Amills M

    更新日期：2020-05-01 00:00:00

  • Human phenol sulfotransferase STP2 gene: molecular cloning, structural characterization, and chromosomal localization.

    abstract：:Sulfonation is an important pathway in the biotransformation of many drugs, xenobiotics, neurotransmitters, and steroid hormones. The thermostable (TS) form of phenol sulfotransferase (PST) preferentially catalyzes the sulfonation of "simple" planar phenols, and levels of activity of TS PST in human tissues are contro...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1996.0216

    authors： Her C,Raftogianis R,Weinshilboum RM

    更新日期：1996-05-01 00:00:00

  • Comparative transcriptome analysis of diploid and triploid hybrid groupers (Epinephelus coioides♀ × E. lanceolatus♂) reveals the mechanism of abnormal gonadal development in triploid hybrids.

    abstract：:In our previous studies, diploid and triploid hybrids have been detected from the hybridization of Epinephelus coioides♀ × E. lanceolatus♂. The triploid groupers have been found to be delayed in gonadal development, but the mechanism remains poorly understood. In this study, we examined the gonadal development, assaye...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2018.11.010

    authors： Xiao L,Wang D,Guo Y,Tang Z,Liu Q,Li S,Zhang Y,Lin H

    更新日期：2019-05-01 00:00:00

  • Genomic sequence, organization, and chromosomal localization of human JAK3.

    abstract：:Members of the Janus (JAK) protein tyrosine kinase family including JAK3 have recently emerged as important components in cytokine signal transduction. Mutations of JAK3 have been found in a number of patients who present with severe combined immunodeficiency. To facilitate the further identification of JAK3-SCID pati...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1996.0520

    authors： Riedy MC,Dutra AS,Blake TB,Modi W,Lal BK,Davis J,Bosse A,O'Shea JJ,Johnston JA

    更新日期：1996-10-01 00:00:00

  • Molecular cloning and characterization of a novel human CC chemokine, SCYA26.

    abstract：:By searching the Expressed Sequence Tag database, a full-length cDNA for a novel human CC chemokine was cloned. This cDNA encoded a 94-amino-acid protein with a putative signal peptide of 26 amino acids. The deduced mature protein had the four conserved cysteine residues characteristic of CC chemokines and showed 44% ...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1999.5837

    authors： Guo RF,Ward PA,Hu SM,McDuffie JE,Huber-Lang M,Shi MM

    更新日期：1999-06-15 00:00:00

  • Complete genome sequence of Bacillus velezensis NST6 and comparison with the species belonging to operational group B. amyloliquefaciens.

    abstract：:Bacillus spp. play important roles in production of bioactive natural products with potential agricultural and medical applications. The three families of lipopeptides produced by Bacillus spp. have been most recognized for their antagonistic activity against other microbes, i.e. fengycin, iturin, and surfactin. A nov...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2020.12.011

    authors： Choi J,Nam J,Seo MH

    更新日期：2021-01-01 00:00:00

  • An explanation for the phenotypic differences between patients bearing partial deletions of the DMD locus.

    abstract：:Deletions giving rise to Duchenne muscular dystrophy (DMD) and the less severe Becker muscular dystrophy (BMD) occur in the same large gene on the short arm of the human X chromosome. We present a molecular mechanism to explain the clinical difference in severity between DMD and BMD patients who bear partial deletions...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/0888-7543(88)90113-9

    authors： Monaco AP,Bertelson CJ,Liechti-Gallati S,Moser H,Kunkel LM

    更新日期：1988-01-01 00:00:00

  • Chromosomal localization of a new mouse lens opacity gene (lop18)

    abstract：:Examination of mouse strains with a slit lamp and indirect ophthalmoscopy revealed that strain CBA/CaGnLe has a white cataract obvious at weaning age. It soon progresses to a large white nuclear cataract with mild cortical changes. Crosses with C57BL/6J showed that this is inherited as a single recessive fully penetra...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1996.0439

    authors： Chang B,Hawes NL,Smith RS,Heckenlively JR,Davisson MT,Roderick TH

    更新日期：1996-08-15 00:00:00

  • Physical mapping of the human neurotensin gene (NTS) between markers D12S1444 and D12S81 on chromosome 12q21.

    abstract：:Neurotensin (NTS) is an endogenous tridecapeptide of the central nervous system and the gastrointestinal tract of different mammalian species including human. The human gene encoding neurotensin has previously been assigned to chromosome 12 but no regional localization was available. We now confirm this assignment and...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1996.0624

    authors： Marondel I,Renault B,Lieman J,Ward D,Kucherlapati R

    更新日期：1996-12-01 00:00:00

  • Linkage map of nine loci defined by polymorphic DNA markers assigned to rat chromosome 13.

    abstract：:A genetic map of nine loci defined by polymorphic DNA markers was created using a single cross of F344/N and LEW/N rats. The markers contained polymorphic simple sequence repeats identified in five genes, renin (Ren), cardiac troponin T (Tnnt3), synaptotagmin (Syt2), Na+,K(+)-ATPase catalytic subunit (Atp1a2), and the...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1993.1466

    authors： Remmers EF,Goldmuntz EA,Zha H,Mathern P,Du Y,Crofford LJ,Wilder RL

    更新日期：1993-11-01 00:00:00

  • Tandem repeats 3' of the IGHA genes in the human immunoglobulin heavy chain gene cluster.

    abstract：:The human IGH constant region spans 350 kb and includes nine genes and two pseudogenes. All of the constant region gene cluster has been cloned except for sequences between the IGHD and IGHG3 genes, between the IGHA1 and IGHG2 genes, and the 3' region downstream of the IGHA2 gene. The regions 3' of the IGHA genes, whi...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1996.0338

    authors： Kang HK,Cox DW

    更新日期：1996-07-01 00:00:00

  • The gene for human glutaredoxin (GLRX) is localized to human chromosome 5q14.

    abstract：:Glutaredoxin is a small protein (12 kDa) catalyzing glutathione-dependent disulfide oxidoreduction reactions in a coupled system with NADPH, GSH, and glutathione reductase. A cDNA encoding the human glutaredoxin gene (HGMW-approved symbol GLRX) has recently been isolated and cloned from a human fetal spleen cDNA libra...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1996.0141

    authors： Padilla CA,Bajalica S,Lagercrantz J,Holmgren A

    更新日期：1996-03-15 00:00:00

  • A refined physical map of the long arm of human chromosome 16.

    abstract：:Mapping of 33 anonymous DNA probes and 12 genes to the long arm of chromosome 16 was achieved by the use of 14 mouse/human hybrid cell lines and the fragile site FRA16B. Two of the hybrid cell lines contained overlapping interstitial deletions in bands q21 and q22.1. The localization of the 12 genes has been refined. ...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/0888-7543(91)90313-4

    authors： Chen LZ,Harris PC,Apostolou S,Baker E,Holman K,Lane SA,Nancarrow JK,Whitmore SA,Stallings RL,Hildebrand CE

    更新日期：1991-06-01 00:00:00

  • Molecular cloning of a human co-beta-glucosidase cDNA: evidence that four sphingolipid hydrolase activator proteins are encoded by single genes in humans and rats.

    abstract：:Authentic cDNAs encoding the activator protein for acid beta-glucosidase (EC3.2.1.45), co-beta-glucosidase, were cloned from the pCD and lambda gt11 human cDNA libraries. Initial screening with oligonucleotide mixtures encoding amino acid sequences of co-beta-glucosidase identified partial cDNAs which were used to obt...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/0888-7543(89)90014-1

    authors： Rorman EG,Grabowski GA

    更新日期：1989-10-01 00:00:00

  • Human chromosome 17 NotI linking clones and their use in long-range restriction mapping of the Miller-Dieker chromosome region (MDCR) in 17p13.3.

    abstract：:A NotI linking library constructed from flow-sorted human chromosome 17 material was screened to aid in construction of a long-range restriction map of the Miller-Dieker chromosome region (MDCR) in 17p13.3. A total of 66 clones were mapped to one of eight regions of chromosome 17 using a somatic cell hybrid panel, and...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/0888-7543(90)90549-a

    authors： Ledbetter SA,Wallace MR,Collins FS,Ledbetter DH

    更新日期：1990-06-01 00:00:00

  • The 2p21 deletion syndrome: characterization of the transcription content.

    abstract：:The vast majority of small-deletion syndromes are caused by haploinsufficiency of one or several genes and are transmitted as dominant traits. We have previously identified a homozygous deletion of 179,311 bp on chromosome 2p21 as the cause of a unique syndrome, inherited in a recessive mode, consisting of cystinuria,...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2005.04.001

    authors： Parvari R,Gonen Y,Alshafee I,Buriakovsky S,Regev K,Hershkovitz E

    更新日期：2005-08-01 00:00:00

  • Integration of multi-objective PSO based feature selection and node centrality for medical datasets.

    abstract：:In the past decades, the rapid growth of computer and database technologies has led to the rapid growth of large-scale medical datasets. On the other, medical applications with high dimensional datasets that require high speed and accuracy are rapidly increasing. One of the dimensionality reduction approaches is featu...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2020.07.027

    authors： Rostami M,Forouzandeh S,Berahmand K,Soltani M

    更新日期：2020-11-01 00:00:00

  • Fragmented mitochondrial genomes evolved in opposite directions between closely related macaque louse Pedicinus obtusus and colobus louse Pedicinus badii.

    abstract：:We report for the first time the fragmented mitochondrial (mt) genomes of two Pedicinus species: Pedicinus obtusus and Pedicinus badii, and compared them with the lice of humans and chimpanzees. Despite being congeneric, the two monkey lice are distinct from each other in mt karyotype. The variation in mt karyotype be...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2020.09.005

    authors： Fu YT,Dong Y,Wang W,Nie Y,Liu GH,Shao R

    更新日期：2020-11-01 00:00:00

  • Identification and characterization of an Xq26-q27 duplication in a family with spina bifida and panhypopituitarism suggests the involvement of two distinct genes.

    abstract：:We investigated a family with a duplication, dup(X)q26-q27, that was present in two brothers, their mother, and their maternal grandmother. The brothers carrying the duplication displayed spina bifida and panhypopituitarism, whereas a third healthy brother inherited the normal X chromosome. Preferential inactivation o...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.2000.6327

    authors： Hol FA,Schepens MT,van Beersum SE,Redolfi E,Affer M,Vezzoni P,Hamel BC,Karnes PS,Mariman EC,Zucchi I

    更新日期：2000-10-15 00:00:00

  • Nonhomologous recombination between the cytochrome b558 heavy chain gene (CYBB) and LINE-1 causes an X-linked chronic granulomatous disease.

    abstract：:We cloned and characterized a genomic DNA fragment including the deletion junction of a chronic granulomatous disease patient with a 25-kb deletion extending to the 5' two-thirds of CYBB. The 3' breakpoint of the deletion exists in exon 7 of CYBB. A LINE-1 element lies at 5 kb upstream of CYBB in normal persons, and t...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1998.5510

    authors： Kumatori A,Faizunnessa NN,Suzuki S,Moriuchi T,Kurozumi H,Nakamura M

    更新日期：1998-10-15 00:00:00

  • Core proteome mediated therapeutic target mining and multi-epitope vaccine design for Helicobacter pylori.

    abstract：:Helicobacter pylori is a Gram-negative spiral-shaped bacterium that infects half of the human population worldwide and causes chronic inflammation. In the present study, we used the art of computational biology for therapeutic drug targets identification and a multi-epitope vaccine against multi-strains of H. pylori. ...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2020.06.026

    authors： Rahman N,Ajmal A,Ali F,Rastrelli L

    更新日期：2020-09-01 00:00:00

  • Structural organization and expression patterns of the human and mouse genes for the type I procollagen COOH-terminal proteinase enhancer protein.

    abstract：:The procollagen C-proteinase enhancer (PCPE) is a glycoprotein that potentiates enzymatic cleavage of the type I procollagen C-propeptide by bone morphogenetic protein-1 (BMP-1). The human PCPE gene (PCOLCE) was previously mapped to 7q22, an area frequently disrupted in uterine leiomyomata, while disruption of the rat...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1998.5663

    authors： Scott IC,Clark TG,Takahara K,Hoffman GG,Greenspan DS

    更新日期：1999-01-15 00:00:00

  • Human uroporphyrinogen-III synthase: genomic organization, alternative promoters, and erythroid-specific expression.

    abstract：:Uroporphyrinogen-III (URO) synthase is the heme biosynthetic enzyme defective in congenital erythropoietic porphyria. The approximately 34-kb human URO-synthase gene (UROS) was isolated, and its organization and tissue-specific expression were determined. The gene had two promoters that generated housekeeping and eryt...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.2000.6373

    authors： Aizencang G,Solis C,Bishop DF,Warner C,Desnick RJ

    更新日期：2000-12-01 00:00:00

  • The cloning and nucleotide sequence of human ST2L cDNA.

    abstract：:The ST2 gene is a member of the IL-1 receptor family and is hypothesized to be involved in helper T cell function, but its functional ligand and physiological role remain unknown. We have cloned the human ST2L cDNA that encodes a distinct type of membrane-bound ST2 protein. The predicted 556-amino-acid sequence showed...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.2000.6269

    authors： Li H,Tago K,Io K,Kuroiwa K,Arai T,Iwahana H,Tominaga S,Yanagisawa K

    更新日期：2000-08-01 00:00:00

  • Organization and evolutionary relatedness of OR37 olfactory receptor genes in mouse and human.

    abstract：:We report a comprehensive comparative analysis of human and mouse olfactory receptor (OR) genes encoding OR37 subtypes to determine the repertoire, chromosomal organization, and relatedness of these genes. Two OR37 clusters were found in both mouse (chromosome 4) and human (chromosome 9); with five genes in cluster I ...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/s0888-7543(03)00116-2

    authors： Hoppe R,Breer H,Strotmann J

    更新日期：2003-09-01 00:00:00

  • Transcriptional profiling of mefloquine-induced disruption of calcium homeostasis in neurons in vitro.

    abstract：:Mefloquine is associated with adverse neurological effects that are mediated via unknown mechanisms. Recent in vitro studies have shown that mefloquine disrupts neuronal calcium homeostasis via liberation of the endoplasmic reticulum (ER) store and induction of calcium influx across the plasma membrane. In the present...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2005.07.004

    authors： Dow GS,Caridha D,Goldberg M,Wolf L,Koenig ML,Yourick DL,Wang Z

    更新日期：2005-11-01 00:00:00

  • Human EVI9, a homologue of the mouse myeloid leukemia gene, is expressed in the hematopoietic progenitors and down-regulated during myeloid differentiation of HL60 cells.

    abstract：:Evi9, a common site of retroviral integration in BXH2 murine myeloid leukemias, encodes a C2H2 zinc finger protein and is overexpressed in these leukemic cells. To investigate a possible role of EVI9 in the human hematopoietic system, we isolated the cDNA clone of the human homologue. Human EVI9, located on the chromo...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.2000.6385

    authors： Saiki Y,Yamazaki Y,Yoshida M,Katoh O,Nakamura T

    更新日期：2000-12-15 00:00:00

  • PCR amplification of chromosome-specific DNA isolated from flow cytometry-sorted chromosomes.

    abstract：:We have established a method for amplifying and obtaining large quantities of chromosome-specific DNA by linker/adaptor ligation and polymerase chain reaction (PCR). Small quantities of DNA isolated from flow cytometry-sorted chromosomes 17 and 21 were digested with MboI, ligated to a linker/adaptor, and then subjecte...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/0888-7543(92)90378-6

    authors： Chang KS,Vyas RC,Deaven LL,Trujillo JM,Stass SA,Hittelman WN

    更新日期：1992-02-01 00:00:00

  • Characterization of a human homologue of the Saccharomyces cerevisiae transcription factor spt3 (SUPT3H).

    abstract：:Spt3 is a Saccharomyces cerevisiae transcription factor that is required in vivo for the transcription of a number of RNA polymerase II-transcribed genes. We report the cloning of the gene encoding the human homologue of Spt3, SUPT3H, and its initial functional analysis. The human and yeast Spt3 homologues share an ov...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1998.5500

    authors： Yu J,Madison JM,Mundlos S,Winston F,Olsen BR

    更新日期：1998-10-01 00:00:00

  • Determination of X-chromosome inactivation status using X-linked expressed polymorphisms identified by database searching.

    abstract：:The large number of redundant sequences available in nucleotide databases provides a resource for the identification of polymorphisms. Expressed polymorphisms in X-linked genes can be used to determine the inactivation status of the genes, and polymorphisms in genes that are subject to inactivation can then be used as...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.2000.6153

    authors： Kutsche R,Brown CJ

    更新日期：2000-04-01 00:00:00