Capsid antibodies to different adeno-associated virus serotypes bind common regions.

Abstract:

:Interactions between viruses and the host antibody immune response are critical in the development and control of disease, and antibodies are also known to interfere with the efficacy of viral vector-based gene delivery. The adeno-associated viruses (AAVs) being developed as vectors for corrective human gene delivery have shown promise in clinical trials, but preexisting antibodies are detrimental to successful outcomes. However, the antigenic epitopes on AAV capsids remain poorly characterized. Cryo-electron microscopy and three-dimensional image reconstruction were used to define the locations of epitopes to which monoclonal fragment antibodies (Fabs) against AAV1, AAV2, AAV5, and AAV6 bind. Pseudoatomic modeling showed that, in each serotype, Fabs bound to a limited number of sites near the protrusions surrounding the 3-fold axes of the T=1 icosahedral capsids. For the closely related AAV1 and AAV6, a common Fab exhibited substoichiometric binding, with one Fab bound, on average, between two of the three protrusions as a consequence of steric crowding. The other AAV Fabs saturated the capsid and bound to the walls of all 60 protrusions, with the footprint for the AAV5 antibody extending toward the 5-fold axis. The angle of incidence for each bound Fab on the AAVs varied and resulted in significant differences in how much of each viral capsid surface was occluded beyond the Fab footprints. The AAV-antibody interactions showed a common set of footprints that overlapped some known receptor-binding sites and transduction determinants, thus suggesting potential mechanisms for virus neutralization by the antibodies.

journal_name

J Virol

journal_title

Journal of virology

authors

Gurda BL,DiMattia MA,Miller EB,Bennett A,McKenna R,Weichert WS,Nelson CD,Chen WJ,Muzyczka N,Olson NH,Sinkovits RS,Chiorini JA,Zolotutkhin S,Kozyreva OG,Samulski RJ,Baker TS,Parrish CR,Agbandje-McKenna M

doi

10.1128/JVI.00622-13

subject

Has Abstract

pub_date

2013-08-01 00:00:00

pages

9111-24

issue

16

eissn

0022-538X

issn

1098-5514

pii

JVI.00622-13

journal_volume

87

pub_type

杂志文章
  • Activation of gene expression by herpes simplex virus type 1 ICP0 occurs at the level of mRNA synthesis.

    abstract::ICP0 is a nuclear phosphoprotein involved in the activation of herpes simplex virus type 1 (HSV-1) gene expression during lytic infection and reactivation from viral latency. Although available evidence suggests that ICP0 acts at the level of transcription, definitive studies specifically addressing this issue have no...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.71.9.6850-6862.1997

    authors: Jordan R,Schaffer PA

    更新日期:1997-09-01 00:00:00

  • Human plasmacytoid dendritic cells sense lymphocytic choriomeningitis virus-infected cells in vitro.

    abstract::We previously reported that exosomal transfer of hepatitis C virus (HCV) positive-strand RNA from human Huh-7 hepatoma cells to human plasmacytoid dendritic cells (pDCs) triggers pDC alpha/beta interferon (IFN-α/β) production in a Toll-like receptor 7 (TLR7)-dependent, virus-independent manner. Here we show that human...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01714-13

    authors: Wieland SF,Takahashi K,Boyd B,Whitten-Bauer C,Ngo N,de la Torre JC,Chisari FV

    更新日期:2014-01-01 00:00:00

  • Effect of neutralizing sera on factor x-mediated adenovirus serotype 5 gene transfer.

    abstract::The deployment of adenovirus serotype 5 (Ad5)-based vectors is hampered by preexisting immunity. When such vectors are delivered intravenously, hepatocyte transduction is mediated by the hexon-coagulation factor X (FX) interaction. Here, we demonstrate that human sera efficiently block FX-mediated cellular binding and...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01878-08

    authors: Parker AL,Waddington SN,Buckley SM,Custers J,Havenga MJ,van Rooijen N,Goudsmit J,McVey JH,Nicklin SA,Baker AH

    更新日期:2009-01-01 00:00:00

  • Retrovirus purification: method that conserves envelope glycoprotein and maximizes infectivity.

    abstract::A Sepharose 4B chromatographic method for purification of retroviruses is described which was less time consuming, increased purified virus yields, conserved viral glycoprotein, and increased recovery of biological infectivity in comparison with conventional sucrose gradient ultracentrifugation techniques. ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.25.3.923-927.1978

    authors: McGrath M,Witte O,Pincus T,Weissman IL

    更新日期:1978-03-01 00:00:00

  • A single amino acid substitution in the murine norovirus capsid protein is sufficient for attenuation in vivo.

    abstract::Murine norovirus (MNV), a prevalent pathogen of laboratory mice, shares many characteristics with human noroviruses. Previous results indicated that passage of MNV1 in the macrophage cell line RAW 264.7 results in attenuation in STAT1-deficient mice (C. E. Wobus, S. M. Karst, L. B. Thackray, K. O. Chang, S. V. Sosnovt...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00237-08

    authors: Bailey D,Thackray LB,Goodfellow IG

    更新日期:2008-08-01 00:00:00

  • Characterization of Recombinant Human Cytomegaloviruses Encoding IE1 Mutants L174P and 1-382 Reveals that Viral Targeting of PML Bodies Perturbs both Intrinsic and Innate Immune Responses.

    abstract:UNLABELLED:PML is the organizer of cellular structures termed nuclear domain 10 (ND10) or PML-nuclear bodies (PML-NBs) that act as key mediators of intrinsic immunity against human cytomegalovirus (HCMV) and other viruses. The antiviral function of ND10 is antagonized by viral regulatory proteins such as the immediate ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01973-15

    authors: Scherer M,Otto V,Stump JD,Klingl S,Müller R,Reuter N,Muller YA,Sticht H,Stamminger T

    更新日期:2015-11-11 00:00:00

  • Vesicular stomatitis virus evolution during alternation between persistent infection in insect cells and acute infection in mammalian cells is dominated by the persistence phase.

    abstract::Vesicular stomatitis virus has the potential for very rapid evolution in the laboratory, but like many other arboviruses, it evolves at a relatively slow rate in the natural environment. Previous work showed that alternating replication in different cell types does not promote stasis. In order to determine whether oth...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.78.22.12236-12242.2004

    authors: Zárate S,Novella IS

    更新日期:2004-11-01 00:00:00

  • Genome variability and capsid structural constraints of hepatitis a virus.

    abstract::The number of synonymous mutations per synonymous site (K(s)), the number of nonsynonymous mutations per nonsynonymous site (K(a)), and the codon usage statistic (N(c)) were calculated for several hepatitis A virus (HAV) isolates. While K(s) was similar to those of poliovirus (PV) and foot-and-mouth disease virus (FMD...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.77.1.452-459.2003

    authors: Sánchez G,Bosch A,Pintó RM

    更新日期:2003-01-01 00:00:00

  • Activation of the Epstein-Barr virus replicative cycle by human herpesvirus 6.

    abstract::One common attribute of herpesviruses is the ability to establish latent, life-long infections. The role of virus-virus interaction in viral reactivation between or among herpesviruses has not been studied. Preliminary experiments in our laboratory had indicated that infection of Epstein-Barr virus (EBV) genome-positi...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.67.11.6768-6777.1993

    authors: Flamand L,Stefanescu I,Ablashi DV,Menezes J

    更新日期:1993-11-01 00:00:00

  • RING-H2 protein WSSV249 from white spot syndrome virus sequesters a shrimp ubiquitin-conjugating enzyme, PvUbc, for viral pathogenesis.

    abstract::Modification of proteins by ubiquitin is essential for numerous cellular processes. The RING-H2 finger motif has been implicated in ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Four proteins, WSSV199, WSSV222, WSSV249, and WSSV403, from white spot syndrome virus (WSSV) contain the RING-H2 motif. Here we...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.14.8764-8772.2005

    authors: Wang Z,Chua HK,Gusti AA,He F,Fenner B,Manopo I,Wang H,Kwang J

    更新日期:2005-07-01 00:00:00

  • A switch region determines the cell type-specific positive or negative action of YY1 on the activity of the human papillomavirus type 18 promoter.

    abstract::YY1 is a zinc finger transcription factor which acts as either a repressor or an activator dependent on the promoter context. YY1 is a potent activator of the genuine human papillomavirus type 18 (HPV-18) upstream regulatory region (URR) in HeLa cells, which are known for high-level expression of the HPV-18 early gene...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.1.1-12.1995

    authors: Bauknecht T,Jundt F,Herr I,Oehler T,Delius H,Shi Y,Angel P,Zur Hausen H

    更新日期:1995-01-01 00:00:00

  • The major phosphorylation sites of the respiratory syncytial virus phosphoprotein are dispensable for virus replication in vitro.

    abstract::The phosphoprotein (P protein) of respiratory syncytial virus (RSV) is a key component of the viral RNA-dependent RNA polymerase complex. The protein is constitutively phosphorylated at the two clusters of serine residues (116, 117, and 119 [116/117/119] and 232 and 237 [232/237]). To examine the role of phosphorylati...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.76.21.10776-10784.2002

    authors: Lu B,Ma CH,Brazas R,Jin H

    更新日期:2002-11-01 00:00:00

  • Efficient Inhibition of Avian and Seasonal Influenza A Viruses by a Virus-Specific Dicer-Substrate Small Interfering RNA Swarm in Human Monocyte-Derived Macrophages and Dendritic Cells.

    abstract::Influenza A viruses (IAVs) are viral pathogens that cause epidemics and occasional pandemics of significant mortality. The generation of efficacious vaccines and antiviral drugs remains a challenge due to the rapid appearance of new influenza virus types and antigenic variants. Consequently, novel strategies for the p...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01916-18

    authors: Jiang M,Österlund P,Westenius V,Guo D,Poranen MM,Bamford DH,Julkunen I

    更新日期:2019-02-05 00:00:00

  • Overexpression of interleukin-2 by a recombinant herpes simplex virus type 1 attenuates pathogenicity and enhances antiviral immunity.

    abstract::The expression of interleukin-2 (IL-2) has been implicated in the modulation of the outcome of ocular infection with herpes simplex virus type 1 (HSV-1); however, its effects remain controversial. To clarify the role of IL-2, we constructed a recombinant HSV-1 (HSV-IL-2) that expresses two copies of the murine IL-2 ge...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.76.18.9069-9078.2002

    authors: Ghiasi H,Osorio Y,Perng GC,Nesburn AB,Wechsler SL

    更新日期:2002-09-01 00:00:00

  • Resolution of a polyomavirus-mouse hybrid replicon: viral function required for recombination.

    abstract::RmI, a circular chimera made of the polyomavirus (Py) genome with an insertion of mouse DNA (Ins), effectively undergoes intramolecular recombination in normal mouse cells, as indicated by the conversion of cloned RmI (RmIc) into unit-length Py DNA in transfected cultures. To follow the fate of the cellular component ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.61.3.845-850.1987

    authors: Piché A,Bourgaux P

    更新日期:1987-03-01 00:00:00

  • Herpes simplex virus 1 regulatory protein ICP22 interacts with a new cell cycle-regulated factor and accumulates in a cell cycle-dependent fashion in infected cells.

    abstract::The herpes simplex virus 1 infected cell protein 22 (ICP22), the product of the alpha22 gene, is a nucleotidylylated and phosphorylated nuclear protein with properties of a transcriptional factor required for the expression of a subset of viral genes. Here, we report the following. (i) ICP22 interacts with a previousl...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.11.8525-8531.1998

    authors: Bruni R,Roizman B

    更新日期:1998-11-01 00:00:00

  • The N-terminal extension of the influenza B virus nucleoprotein is not required for nuclear accumulation or the expression and replication of a model RNA.

    abstract::The nucleoprotein (NP) of influenza B virus is 50 amino acids longer at the N-terminus than influenza A virus NP and lacks homology to the A virus protein over the first 69 residues. We have deleted the N-terminal 51 and 69 residues of the influenza B/Ann Arbor/1/66 virus NP and show that nuclear accumulation of the p...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.6.5307-5312.1998

    authors: Stevens MP,Barclay WS

    更新日期:1998-06-01 00:00:00

  • Heterosubtypic immunity to influenza A virus infection requires a properly diversified antibody repertoire.

    abstract::Heterosubtypic immunity (HSI) is defined as cross-protection to infection with an influenza A virus serotype other than the one used for primary infection. Although HSI has been thought to be mediated by serotype cross-reactive cytotoxic T lymphocytes (CTL) that recognize conserved epitopes of structural proteins, rec...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00751-07

    authors: Nguyen HH,Zemlin M,Ivanov II,Andrasi J,Zemlin C,Vu HL,Schelonka R,Schroeder HW Jr,Mestecky J

    更新日期:2007-09-01 00:00:00

  • Analysis of N-linked glycosylation of hantaan virus glycoproteins and the role of oligosaccharide side chains in protein folding and intracellular trafficking.

    abstract::The membrane glycoproteins Gn and Gc of Hantaan virus (HTNV) (family Bunyaviridae) are modified by N-linked glycosylation. The glycoproteins contain six potential sites for the attachment of N-linked oligosaccharides, five sites on Gn and one on Gc. The properties of the N-linked oligosaccharide chains were analyzed b...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.78.10.5414-5422.2004

    authors: Shi X,Elliott RM

    更新日期:2004-05-01 00:00:00

  • Keratinocytes are cell targets of West Nile virus in vivo.

    abstract::West Nile virus (WNV) replicates in the skin; however, cell targets in the skin have not been identified. In the current studies, WNV infected the epidermis and adnexal glands of mouse skin, and the epidermal cells were identified as keratinocytes by double labeling for WNV antigen and keratin 10. Inoculation of mice ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02692-10

    authors: Lim PY,Behr MJ,Chadwick CM,Shi PY,Bernard KA

    更新日期:2011-05-01 00:00:00

  • Inactivation of the human papillomavirus E6 or E7 gene in cervical carcinoma cells by using a bacterial CRISPR/Cas RNA-guided endonuclease.

    abstract::High-risk human papillomaviruses (HPVs), including HPV-16 and HPV-18, are the causative agents of cervical carcinomas and are linked to several other tumors of the anogenital and oropharyngeal regions. The majority of HPV-induced tumors contain integrated copies of the normally episomal HPV genome that invariably reta...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01879-14

    authors: Kennedy EM,Kornepati AV,Goldstein M,Bogerd HP,Poling BC,Whisnant AW,Kastan MB,Cullen BR

    更新日期:2014-10-01 00:00:00

  • Adenovirus type 5 rupture of lysosomes leads to cathepsin B-dependent mitochondrial stress and production of reactive oxygen species.

    abstract::In response to viral infection, reactive oxygen species (ROS) mediate innate immune signaling or generate danger signals to activate immune cells. The mechanisms of virally induced ROS are poorly defined, however. We demonstrate that ROS are produced within minutes of adenovirus type 5 (Ad5) infection of macrophages a...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00675-11

    authors: McGuire KA,Barlan AU,Griffin TM,Wiethoff CM

    更新日期:2011-10-01 00:00:00

  • Two distinct sequence elements mediate retroviral gene expression in embryonal carcinoma cells.

    abstract::Moloney murine leukemia virus (M-MuLV) and M-MuLV-derived retroviral vectors are not expressed in early mouse embryos or in embryonal carcinoma cells. M-MuLV-derived mutants or M-MuLV-related variants which transduce the neomycin phosphotransferase gene can, however, induce drug resistance in embryonal carcinoma cells...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.61.9.2742-2746.1987

    authors: Weiher H,Barklis E,Ostertag W,Jaenisch R

    更新日期:1987-09-01 00:00:00

  • Herpes simplex virus type 1 DNA-packaging protein UL17 is required for efficient binding of UL25 to capsids.

    abstract::Herpes simplex virus type 1 packages its DNA genome into a precursor capsid, referred to as the procapsid. Of the three capsid-associated DNA-packaging proteins, UL17, UL25, and UL6, only UL17 and UL6 appear to be components of the procapsid, with UL25 being added subsequently. To determine whether the association of ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.80.5.2118-2126.2006

    authors: Thurlow JK,Murphy M,Stow ND,Preston VG

    更新日期:2006-03-01 00:00:00

  • Twin studies demonstrate a host cell genetic effect on productive human immunodeficiency virus infection of human monocytes and macrophages in vitro.

    abstract::Biological and genetic variability is a prominent feature of human immunodeficiency virus (HIV) strains, especially in tropism, syncytium formation, and replicative capacity. To determine whether there were variable host cell effects on HIV replication in monocytes, three different strains of low-passage-number monocy...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.70.11.7792-7803.1996

    authors: Chang J,Naif HM,Li S,Sullivan JS,Randle CM,Cunningham AL

    更新日期:1996-11-01 00:00:00

  • Segregation of EAV-HP ancient endogenous retroviruses within the chicken population.

    abstract::Avian leukosis virus subgroup J (ALV-J), an exogenous avian retrovirus, is thought to have evolved by recombination with the highly identical env gene of the endogenous avian retrovirus EAV-HP. Embryonic expression of EAV-HP env has been suggested to be associated with the induction of immunological tolerance, a featu...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.75.23.11935-11938.2001

    authors: Sacco MA,Venugopal K

    更新日期:2001-12-01 00:00:00

  • Epitope-mapping studies define two major neutralization sites on the vaccinia virus extracellular enveloped virus glycoprotein B5R.

    abstract::Vaccinia extracellular enveloped virus (EEV) is critical for cell-to-cell and long-range virus spread both in vitro and in vivo. The B5R gene encodes an EEV-specific type I membrane protein that is essential for efficient EEV formation. The majority of the B5R ectodomain consists of four domains with homology to short...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.10.6260-6271.2005

    authors: Aldaz-Carroll L,Whitbeck JC,Ponce de Leon M,Lou H,Hirao L,Isaacs SN,Moss B,Eisenberg RJ,Cohen GH

    更新日期:2005-05-01 00:00:00

  • Construction of avian adenovirus CELO recombinants in cosmids.

    abstract::The avian adenovirus CELO is a promising vector for gene transfer applications. In order to study this potentiality, we developed an improved method for construction of adenovirus vectors in cosmids that was used to engineer the CELO genome. For all the recombinant viruses constructed by this method, the ability to pr...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.75.11.5288-5301.2001

    authors: François A,Eterradossi N,Delmas B,Payet V,Langlois P

    更新日期:2001-06-01 00:00:00

  • Genetic informational RNA is not required for recombinant prion infectivity.

    abstract::Whether a genetic informational nucleic acid is required for the infectivity of transmissible spongiform encephalopathies is central to the debate about the infectious agent. Here we report that an infectious prion formed with bacterially expressed recombinant prion protein plus synthetic polyriboadenylic acid and syn...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.06216-11

    authors: Wang F,Zhang Z,Wang X,Li J,Zha L,Yuan CG,Weissmann C,Ma J

    更新日期:2012-02-01 00:00:00

  • Sonic fragility of the head-tail bond of bacteriophage P22.

    abstract::The binding of tail parts to the head of phage P22 is normally irreversible, but after adsorption to host cells sonication releases many of the tail parts intact. This release is dependent on the power of sonication, but is independent of the length of sonication from 2 to 32 s. This phenomenon has been used to show t...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.17.2.675-677.1976

    authors: Ruddel M,Israel V

    更新日期:1976-02-01 00:00:00