Towards cross-modal organ translation and segmentation: A cycle- and shape-consistent generative adversarial network.

Abstract:

:Synthesized medical images have several important applications. For instance, they can be used as an intermedium in cross-modality image registration or used as augmented training samples to boost the generalization capability of a classifier. In this work, we propose a generic cross-modality synthesis approach with the following targets: 1) synthesizing realistic looking 2D/3D images without needing paired training data, 2) ensuring consistent anatomical structures, which could be changed by geometric distortion in cross-modality synthesis and 3) more importantly, improving volume segmentation by using synthetic data for modalities with limited training samples. We show that these goals can be achieved with an end-to-end 2D/3D convolutional neural network (CNN) composed of mutually-beneficial generators and segmentors for image synthesis and segmentation tasks. The generators are trained with an adversarial loss, a cycle-consistency loss, and also a shape-consistency loss (supervised by segmentors) to reduce the geometric distortion. From the segmentation view, the segmentors are boosted by synthetic data from generators in an online manner. Generators and segmentors prompt each other alternatively in an end-to-end training fashion. We validate our proposed method on three datasets, including cardiovascular CT and magnetic resonance imaging (MRI), abdominal CT and MRI, and mammography X-rays from different data domains, showing both tasks are beneficial to each other and coupling these two tasks results in better performance than solving them exclusively.

journal_name

Med Image Anal

journal_title

Medical image analysis

authors

Cai J,Zhang Z,Cui L,Zheng Y,Yang L

doi

10.1016/j.media.2018.12.002

subject

Has Abstract

pub_date

2019-02-01 00:00:00

pages

174-184

eissn

1361-8415

issn

1361-8423

pii

S1361-8415(18)30342-6

journal_volume

52

pub_type

杂志文章
  • Automated age estimation from MRI volumes of the hand.

    abstract::Highly relevant for both clinical and legal medicine applications, the established radiological methods for estimating unknown age in children and adolescents are based on visual examination of bone ossification in X-ray images of the hand. Our group has initiated the development of fully automatic age estimation meth...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.101538

    authors: Štern D,Payer C,Urschler M

    更新日期:2019-12-01 00:00:00

  • An image space approach to Cartesian based parallel MR imaging with total variation regularization.

    abstract::The Cartesian parallel magnetic imaging problem is formulated variationally using a high-order penalty for coil sensitivities and a total variation like penalty for the reconstructed image. Then the optimality system is derived and numerically discretized. The objective function used is non-convex, but it possesses a ...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2011.07.002

    authors: Keeling SL,Clason C,Hintermüller M,Knoll F,Laurain A,von Winckel G

    更新日期:2012-01-01 00:00:00

  • CHAOS Challenge - combined (CT-MR) healthy abdominal organ segmentation.

    abstract::Segmentation of abdominal organs has been a comprehensive, yet unresolved, research field for many years. In the last decade, intensive developments in deep learning (DL) introduced new state-of-the-art segmentation systems. Despite outperforming the overall accuracy of existing systems, the effects of DL model proper...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2020.101950

    authors: Kavur AE,Gezer NS,Barış M,Aslan S,Conze PH,Groza V,Pham DD,Chatterjee S,Ernst P,Özkan S,Baydar B,Lachinov D,Han S,Pauli J,Isensee F,Perkonigg M,Sathish R,Rajan R,Sheet D,Dovletov G,Speck O,Nürnberger A,Maier-H

    更新日期:2020-12-25 00:00:00

  • A gradient-based optical-flow cardiac motion estimation method for cine and tagged MR images.

    abstract::A new method is proposed to quantify the myocardial motion from both 2D C(ine)-MRI and T(agged)-MRI sequences. The tag pattern offers natural landmarks within the image that makes it possible to accurately quantify the motion within the myocardial wall. Therefore, several methods have been proposed for T-MRI. However,...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.06.016

    authors: Wang L,Clarysse P,Liu Z,Gao B,Liu W,Croisille P,Delachartre P

    更新日期:2019-10-01 00:00:00

  • Tumor sensitive matching flow: A variational method to detecting and segmenting perihepatic and perisplenic ovarian cancer metastases on contrast-enhanced abdominal CT.

    abstract::Accurate automated segmentation and detection of ovarian cancer metastases may improve the diagnosis and prognosis of women with ovarian cancer. In this paper, we focus on an important subset of ovarian cancer metastases that spread to the surface of the liver and spleen. Automated ovarian cancer metastasis detection ...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2014.04.001

    authors: Liu J,Wang S,Linguraru MG,Yao J,Summers RM

    更新日期:2014-07-01 00:00:00

  • Piecewise-diffeomorphic image registration: application to the motion estimation between 3D CT lung images with sliding conditions.

    abstract::In this paper, we propose a new strategy for modelling sliding conditions when registering 3D images in a piecewise-diffeomorphic framework. More specifically, our main contribution is the development of a mathematical formalism to perform Large Deformation Diffeomorphic Metric Mapping registration with sliding condit...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2012.10.001

    authors: Risser L,Vialard FX,Baluwala HY,Schnabel JA

    更新日期:2013-02-01 00:00:00

  • RMDL: Recalibrated multi-instance deep learning for whole slide gastric image classification.

    abstract::The whole slide histopathology images (WSIs) play a critical role in gastric cancer diagnosis. However, due to the large scale of WSIs and various sizes of the abnormal area, how to select informative regions and analyze them are quite challenging during the automatic diagnosis process. The multi-instance learning bas...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.101549

    authors: Wang S,Zhu Y,Yu L,Chen H,Lin H,Wan X,Fan X,Heng PA

    更新日期:2019-12-01 00:00:00

  • Three-dimensional multi-scale line filter for segmentation and visualization of curvilinear structures in medical images.

    abstract::This paper describes a method for the enhancement of curvilinear structures such as vessels and bronchi in three-dimensional (3-D) medical images. A 3-D line enhancement filter is developed with the aim of discriminating line structures from other structures and recovering line structures of various widths. The 3-D li...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/s1361-8415(98)80009-1

    authors: Sato Y,Nakajima S,Shiraga N,Atsumi H,Yoshida S,Koller T,Gerig G,Kikinis R

    更新日期:1998-06-01 00:00:00

  • Evaluation of automatic neonatal brain segmentation algorithms: the NeoBrainS12 challenge.

    abstract::A number of algorithms for brain segmentation in preterm born infants have been published, but a reliable comparison of their performance is lacking. The NeoBrainS12 study (http://neobrains12.isi.uu.nl), providing three different image sets of preterm born infants, was set up to provide such a comparison. These sets a...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2014.11.001

    authors: Išgum I,Benders MJ,Avants B,Cardoso MJ,Counsell SJ,Gomez EF,Gui L,Hűppi PS,Kersbergen KJ,Makropoulos A,Melbourne A,Moeskops P,Mol CP,Kuklisova-Murgasova M,Rueckert D,Schnabel JA,Srhoj-Egekher V,Wu J,Wang S,de Vries

    更新日期:2015-02-01 00:00:00

  • DT-MRI denoising and neuronal fiber tracking.

    abstract::Diffusion tensor imaging can provide the fundamental information required for viewing structural connectivity. However, robust and accurate acquisition and processing algorithms are needed to accurately map the nerve connectivity. In this paper, we present a novel algorithm for extracting and visualizing the fiber tra...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2003.12.001

    authors: McGraw T,Vemuri BC,Chen Y,Rao M,Mareci T

    更新日期:2004-06-01 00:00:00

  • Independent component analysis using prior information for signal detection in a functional imaging system of the retina.

    abstract::Independent component analysis (ICA) is a statistical technique that estimates a set of sources mixed by an unknown mixing matrix using only a set of observations. For this purpose, the only assumption is that the sources are statistically independent. In many applications, some information about the nature of the unk...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2010.06.009

    authors: Barriga ES,Pattichis M,Ts'o D,Abramoff M,Kardon R,Kwon Y,Soliz P

    更新日期:2011-02-01 00:00:00

  • Respiratory motion models: a review.

    abstract::The problem of respiratory motion has proved a serious obstacle in developing techniques to acquire images or guide interventions in abdominal and thoracic organs. Motion models offer a possible solution to these problems, and as a result the field of respiratory motion modelling has become an active one over the past...

    journal_title:Medical image analysis

    pub_type: 杂志文章,评审

    doi:10.1016/j.media.2012.09.005

    authors: McClelland JR,Hawkes DJ,Schaeffter T,King AP

    更新日期:2013-01-01 00:00:00

  • Interactive training system for interventional electrocardiology procedures.

    abstract::Recent progress in cardiac catheterization and devices has allowed the development of new therapies for severe cardiac diseases like arrhythmias and heart failure. The skills required for such interventions are very challenging to learn, and are typically acquired over several years. Virtual reality simulators may red...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2016.06.040

    authors: Talbot H,Spadoni F,Duriez C,Sermesant M,O'Neill M,Jaïs P,Cotin S,Delingette H

    更新日期:2017-01-01 00:00:00

  • Improved fidelity of brain microstructure mapping from single-shell diffusion MRI.

    abstract::Diffusion weighted imaging (DWI) is sensitive to alterations in the diffusion of water molecules caused by microstructural barriers. Different microstructural compartments are characterized by differences in DWI signal. Diffusion tensor imaging conflates the signal from these compartments into a single tensor, which p...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2015.10.004

    authors: Taquet M,Scherrer B,Boumal N,Peters JM,Macq B,Warfield SK

    更新日期:2015-12-01 00:00:00

  • Neighborhood resolved fiber orientation distributions (NRFOD) in automatic labeling of white matter fiber pathways.

    abstract::Accurate digital representation of major white matter bundles in the brain is an important goal in neuroscience image computing since the representations can be used for surgical planning, intra-patient longitudinal analysis and inter-subject population connectivity studies. Reconstructing desired fiber bundles genera...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2018.02.008

    authors: Ugurlu D,Firat Z,Türe U,Unal G

    更新日期:2018-05-01 00:00:00

  • Advances and challenges in deformable image registration: From image fusion to complex motion modelling.

    abstract::Over the past 20 years, the field of medical image registration has significantly advanced from multi-modal image fusion to highly non-linear, deformable image registration for a wide range of medical applications and imaging modalities, involving the compensation and analysis of physiological organ motion or of tissu...

    journal_title:Medical image analysis

    pub_type: 社论

    doi:10.1016/j.media.2016.06.031

    authors: Schnabel JA,Heinrich MP,Papież BW,Brady SJM

    更新日期:2016-10-01 00:00:00

  • An information theoretic approach for non-rigid image registration using voxel class probabilities.

    abstract::We propose two information theoretic similarity measures that allow to incorporate tissue class information in non-rigid image registration. The first measure assumes that tissue class probabilities have been assigned to each of the images to be registered by prior segmentation of both of them. One image is then non-r...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2005.03.004

    authors: D'Agostino E,Maes F,Vandermeulen D,Suetens P

    更新日期:2006-06-01 00:00:00

  • Cardiac image modelling: Breadth and depth in heart disease.

    abstract::With the advent of large-scale imaging studies and big health data, and the corresponding growth in analytics, machine learning and computational image analysis methods, there are now exciting opportunities for deepening our understanding of the mechanisms and characteristics of heart disease. Two emerging fields are ...

    journal_title:Medical image analysis

    pub_type: 社论,评审

    doi:10.1016/j.media.2016.06.027

    authors: Suinesiaputra A,McCulloch AD,Nash MP,Pontre B,Young AA

    更新日期:2016-10-01 00:00:00

  • Sensorless freehand 3D ultrasound in real tissue: speckle decorrelation without fully developed speckle.

    abstract::It has previously been demonstrated that freehand 3D ultrasound can be acquired without a position sensor by measuring the elevational speckle decorrelation from frame to frame. However, this requires that the B-scans contain significant amounts of fully developed speckle. In this paper, we show that this condition is...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2005.08.001

    authors: Gee AH,James Housden R,Hassenpflug P,Treece GM,Prager RW

    更新日期:2006-04-01 00:00:00

  • An accurate, fast and robust method to generate patient-specific cubic Hermite meshes.

    abstract::In-silico continuum simulations of organ and tissue scale physiology often require a discretisation or mesh of the solution domain. Cubic Hermite meshes provide a smooth representation of anatomy that is well-suited for simulating large deformation mechanics. Models of organ mechanics and deformation have demonstrated...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2011.06.010

    authors: Lamata P,Niederer S,Nordsletten D,Barber DC,Roy I,Hose DR,Smith N

    更新日期:2011-12-01 00:00:00

  • Groupwise registration with global-local graph shrinkage in atlas construction.

    abstract::Graph-based groupwise registration methods are widely used in atlas construction. Given a group of images, a graph is built whose nodes represent the images, and whose edges represent a geodesic path between two nodes. The distribution of images on an image manifold is explored through edge traversal in a graph. The f...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2020.101711

    authors: Fu T,Yang J,Li Q,Ai D,Song H,Jiang Y,Wang Y,Frangi AF

    更新日期:2020-08-01 00:00:00

  • Nonlinear multiscale regularisation in MR elastography: Towards fine feature mapping.

    abstract::Fine-featured elastograms may provide additional information of radiological interest in the context of in vivo elastography. Here a new image processing pipeline called ESP (Elastography Software Pipeline) is developed to create Magnetic Resonance Elastography (MRE) maps of viscoelastic parameters (complex modulus ma...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2016.05.012

    authors: Barnhill E,Hollis L,Sack I,Braun J,Hoskins PR,Pankaj P,Brown C,van Beek EJR,Roberts N

    更新日期:2017-01-01 00:00:00

  • Non-invasive estimation of relative pressure in turbulent flow using virtual work-energy.

    abstract::Vascular pressure differences are established risk markers for a number of cardiovascular diseases. Relative pressures are, however, often driven by turbulence-induced flow fluctuations, where conventional non-invasive methods may yield inaccurate results. Recently, we proposed a novel method for non-turbulent flows, ...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.101627

    authors: Marlevi D,Ha H,Dillon-Murphy D,Fernandes JF,Fovargue D,Colarieti-Tosti M,Larsson M,Lamata P,Figueroa CA,Ebbers T,Nordsletten DA

    更新日期:2020-02-01 00:00:00

  • Segmentation of carpal bones from CT images using skeletally coupled deformable models.

    abstract::The in vivo investigation of joint kinematics in normal and injured wrist requires the segmentation of carpal bones from 3D (CT) images, and their registration over time. The non-uniformity of bone tissue, ranging from dense cortical bone to textured spongy bone, the irregular shape of closely packed carpal bones, sma...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/s1361-8415(02)00065-8

    authors: Sebastian TB,Tek H,Crisco JJ,Kimia BB

    更新日期:2003-03-01 00:00:00

  • Quantitative analysis of multi-spectral fundus images.

    abstract::We have developed a new technique for extracting histological parameters from multi-spectral images of the ocular fundus. The new method uses a Monte Carlo simulation of the reflectance of the fundus to model how the spectral reflectance of the tissue varies with differing tissue histology. The model is parameterised ...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2006.05.007

    authors: Styles IB,Calcagni A,Claridge E,Orihuela-Espina F,Gibson JM

    更新日期:2006-08-01 00:00:00

  • 4D hyperspherical harmonic (HyperSPHARM) representation of surface anatomy: a holistic treatment of multiple disconnected anatomical structures.

    abstract::Image-based parcellation of the brain often leads to multiple disconnected anatomical structures, which pose significant challenges for analyses of morphological shapes. Existing shape models, such as the widely used spherical harmonic (SPHARM) representation, assume topological invariance, so are unable to simultaneo...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2015.02.004

    authors: Pasha Hosseinbor A,Chung MK,Koay CG,Schaefer SM,van Reekum CM,Schmitz LP,Sutterer M,Alexander AL,Davidson RJ

    更新日期:2015-05-01 00:00:00

  • Noise reduction in diffusion MRI using non-local self-similar information in joint x-q space.

    abstract::Diffusion MRI affords valuable insights into white matter microstructures, but suffers from low signal-to-noise ratio (SNR), especially at high diffusion weighting (i.e., b-value). To avoid time-intensive repeated acquisition, post-processing algorithms are often used to reduce noise. Among existing methods, non-local...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.01.006

    authors: Chen G,Wu Y,Shen D,Yap PT

    更新日期:2019-04-01 00:00:00

  • Coupled parametric model for estimation of visual field tests based on OCT macular thickness maps, and vice versa, in glaucoma care.

    abstract::The current standard of care for glaucoma patients consists of functional assessment of vision via visual field (VF) testing, which is sensitive but subjective, time-consuming, and often unreliable. A new imaging technology, Fourier domain optical coherence tomography (OCT), is being introduced to assess the structura...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2011.05.012

    authors: Tsai A,Caprioli J,Shen LQ

    更新日期:2012-01-01 00:00:00

  • Multi-task exclusive relationship learning for alzheimer's disease progression prediction with longitudinal data.

    abstract::Alzheimer's disease (AD) is a neurodegenerative disorder characterized by progressive impairment of memory and other cognitive functions. Currently, many multi-task learning approaches have been proposed to predict the disease progression at the early stage using longitudinal data, with each task corresponding to a pa...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.01.007

    authors: Wang M,Zhang D,Shen D,Liu M

    更新日期:2019-04-01 00:00:00

  • Towards intelligent robust detection of anatomical structures in incomplete volumetric data.

    abstract::Robust and fast detection of anatomical structures represents an important component of medical image analysis technologies. Current solutions for anatomy detection are based on machine learning, and are generally driven by suboptimal and exhaustive search strategies. In particular, these techniques do not effectively...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2018.06.007

    authors: Ghesu FC,Georgescu B,Grbic S,Maier A,Hornegger J,Comaniciu D

    更新日期:2018-08-01 00:00:00