Phytophthora database 2.0: update and future direction.

Abstract:

:The online community resource Phytophthora database (PD) was developed to support accurate and rapid identification of Phytophthora and to help characterize and catalog the diversity and evolutionary relationships within the genus. Since its release in 2008, the sequence database has grown to cover 1 to 12 loci for ≈2,600 isolates (representing 138 described and provisional species). Sequences of multiple mitochondrial loci were added to complement nuclear loci-based phylogenetic analyses and diagnostic tool development. Key characteristics of most newly described and provisional species have been summarized. Other additions to improve the PD functionality include: (i) geographic information system tools that enable users to visualize the geographic origins of chosen isolates on a global-scale map, (ii) a tool for comparing genetic similarity between isolates via microsatellite markers to support population genetic studies, (iii) a comprehensive review of molecular diagnostics tools and relevant references, (iv) sequence alignments used to develop polymerase chain reaction-based diagnostics tools to support their utilization and new diagnostic tool development, and (v) an online community forum for sharing and preserving experience and knowledge accumulated in the global Phytophthora community. Here we present how these improvements can support users and discuss the PD's future direction.

journal_name

Phytopathology

journal_title

Phytopathology

authors

Park B,Martin F,Geiser DM,Kim HS,Mansfield MA,Nikolaeva E,Park SY,Coffey MD,Russo J,Kim SH,Balci Y,Abad G,Burgess T,Grünwald NJ,Cheong K,Choi J,Lee YH,Kang S

doi

10.1094/PHYTO-01-13-0023-R

subject

Has Abstract

pub_date

2013-12-01 00:00:00

pages

1204-8

issue

12

eissn

0031-949X

issn

1943-7684

journal_volume

103

pub_type

信件
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  • Spatiotemporal colonization of Xylella fastidiosa in its vector supports the role of egestion in the inoculation mechanism of foregut-borne plant pathogens.

    abstract::The pathogen that causes Pierce's disease of grapevine, Xylella fastidiosa, is the only known bacterial, arthropod-transmitted plant pathogen that does not circulate in the vector's hemolymph. Instead, bacteria are foregut-borne, persistent in adult vectors but semipersistent in immatures (i.e., bacteria colonize cuti...

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  • Spatial-Temporal and Quantitative Analysis of Growth and EPS I Production by Ralstonia solanacearum in Resistant and Susceptible Tomato Cultivars.

    abstract::ABSTRACT One susceptible and two resistant cultivars of tomato were tested for differences in infection by Ralstonia solanacearum and for the subsequent multiplication, colonization, and production of the wilt-inducing virulence factor, exopolysaccharide I (EPS I). Bacterial ingress into the taproot was fastest in the...

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  • Characterization, Phylogeny, and Genome Analyses of Nonpathogenic Xanthomonas campestris Strains Isolated from Brassica Seeds.

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  • Effects of acibenzolar-s-methyl and ethirimol on the composition of a laboratory population of barley powdery mildew.

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  • Real-time quantitative expression studies of the zearalenone biosynthetic gene cluster in Fusarium graminearum.

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  • Effect of temperature, vector life stage, and plant access period on transmission of banana bunchy top virus to banana.

    abstract::The study of the transmission biology of insect-borne plant viruses is important to develop disease control practices. We characterized the transmission of a nanovirus, Banana bunchy top virus (BBTV), by its aphid vector Pentalonia nigronervosa Coquerel (Hemiptera, Aphididae) with respect to temperature, vector life s...

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  • Vegetative Compatibility Groups of Verticillium dahliae in Israel: Their Distribution and Association with Pathogenicity.

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  • Characterization of Putative Effectors from the Cereal Cyst Nematode Heterodera avenae.

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  • Reproductive Ability of Hybrids of Striga aspera and Striga hermonthica.

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  • Allocation of resources: sources of variation in fusarium head blight screening nurseries.

    abstract::ABSTRACT Severe epidemics of Fusarium head blight (FHB) caused by Fusarium graminearum, group II (teleomorph: Gibberella zeae) have been occurring on wheat crops in the northcentral United States and southern Canada. Evaluation of resistance to FHB is difficul, because resistance is partial and infection depends upon ...

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  • Effect of wetness duration and temperature on the development of anthracnose on selected almond tissues and comparison of cultivar susceptibility.

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  • Determinants of Virulence and In Vitro Development Colocalize on a Genetic Map of Setosphaeria turcica.

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  • Penicillium digitatum Suppresses Production of Hydrogen Peroxide in Host Tissue During Infection of Citrus Fruit.

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  • Identification and Characterization of Menadione and Benzethonium Chloride as Potential Treatments of Pierce's Disease of Grapevines.

    abstract::Xylella fastidiosa infects a wide range of plant hosts and causes Pierce's disease (PD) of grapevines. The type 1 multidrug resistance (MDR) efflux system is essential for pathogenicity and survival of bacterial pathogens in planta. X. fastidiosa, with a single MDR system, is significantly more vulnerable to inhibitio...

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  • Statistical Power in Plant Pathology Research.

    abstract::In null hypothesis testing, failure to reject a null hypothesis may have two potential interpretations. One interpretation is that the treatments being evaluated do not have a significant effect, and a correct conclusion was reached in the analysis. Alternatively, a treatment effect may have existed but the conclusion...

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  • Networks in plant epidemiology: from genes to landscapes, countries, and continents.

    abstract::There is increasing use of networks in ecology and epidemiology, but still relatively little application in phytopathology. Networks are sets of elements (nodes) connected in various ways by links (edges). Network analysis aims to understand system dynamics and outcomes in relation to network characteristics. Many exi...

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    pub_type: 杂志文章

    doi:10.1094/PHYTO-97-12-1658

    authors: Hebbar PK

    更新日期:2007-12-01 00:00:00

  • Development and Validation of an Infection Risk Model for Bacterial Canker of Kiwifruit, Using a Multiplication and Dispersal Concept for Forecasting Bacterial Diseases.

    abstract::A weather-based disease prediction model for bacterial canker of kiwifruit (known worldwide as Psa; Pseudomonas syringae pv. actinidiae biovar 3) was developed using a new mechanistic scheme for bacterial disease forecasters, the multiplication and dispersal concept. Bacterial multiplication is estimated from a temper...

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    pub_type: 杂志文章

    doi:10.1094/PHYTO-04-16-0166-R

    authors: Beresford RM,Tyson JL,Henshall WR

    更新日期:2017-02-01 00:00:00

  • Systemically induced resistance and microbial competitive exclusion: implications on biological control.

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    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-04-11-0120

    authors: Martinuz A,Schouten A,Sikora RA

    更新日期:2012-03-01 00:00:00

  • Draft Whole Genome Sequence Analyses on Pseudomonas syringae pv. actinidiae Hypersensitive Response Negative Strains Detected from Kiwifruit Bleeding Sap Samples.

    abstract::Kiwifruit bleeding sap samples, collected in Italian and Chilean orchards from symptomatic and asymptomatic plants, were evaluated for the presence of Pseudomonas syringae pv. actinidiae, the causal agent of bacterial canker. The saps were sampled during the spring in both hemispheres, before the bud sprouting, during...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-08-17-0278-R

    authors: Biondi E,Zamorano A,Vega E,Ardizzi S,Sitta D,De Salvador FR,Campos-Vargas R,Meneses C,Perez S,Bertaccini A,Fiore N

    更新日期:2018-05-01 00:00:00