Nonparametric collective spectral density estimation with an application to clustering the brain signals.

Abstract:

:In this paper, we develop a method for the simultaneous estimation of spectral density functions (SDFs) for a collection of stationary time series that share some common features. Due to the similarities among the SDFs, the log-SDF can be represented using a common set of basis functions. The basis shared by the collection of the log-SDFs is estimated as a low-dimensional manifold of a large space spanned by a prespecified rich basis. A collective estimation approach pools information and borrows strength across the SDFs to achieve better estimation efficiency. Moreover, each estimated spectral density has a concise representation using the coefficients of the basis expansion, and these coefficients can be used for visualization, clustering, and classification purposes. The Whittle pseudo-maximum likelihood approach is used to fit the model and an alternating blockwise Newton-type algorithm is developed for the computation. A web-based shiny App found at "https://ncsde.shinyapps.io/NCSDE" is developed for visualization, training, and learning the SDFs collectively using the proposed technique. Finally, we apply our method to cluster similar brain signals recorded by the for identifying synchronized brain regions according to their spectral densities.

journal_name

Stat Med

journal_title

Statistics in medicine

authors

Maadooliat M,Sun Y,Chen T

doi

10.1002/sim.7972

subject

Has Abstract

pub_date

2018-12-30 00:00:00

pages

4789-4806

issue

30

eissn

0277-6715

issn

1097-0258

journal_volume

37

pub_type

杂志文章
  • Variation in heart disease mortality across census tracts as a function of overdispersion and social class mixture.

    abstract::Variation in heart disease (HD) mortality rates across census tracts is greater than expected given binomial error and available explanatory variables. We extended an extra-binomial variation model for rates standardized by the direct method. The overdispersion parameter accounted for 36 per cent of the observed varia...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780091009

    authors: Jarjoura D,Logue E

    更新日期:1990-10-01 00:00:00

  • Model selection in logistic joinpoint regression with applications to analyzing cohort mortality patterns.

    abstract::We consider a general model for anomaly detection in a longitudinal cohort mortality pattern based on logistic joinpoint regression with unknown joinpoints. We discuss backward and forward sequential procedures for selecting both the locations and the number of joinpoints. Estimation of the model parameters and the se...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.3017

    authors: Czajkowski M,Gill R,Rempala G

    更新日期:2008-04-30 00:00:00

  • Spatiotemporal surveillance methods in the presence of spatial correlation.

    abstract::Health surveillance involves collecting public health data on chronic and infectious diseases to detect changes in disease incidence rates in order to improve public health. Timely detection of disease clusters is essential in prospective public health surveillance. Most existing health surveillance research is based ...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.3877

    authors: Jiang W,Han SW,Tsui KL,Woodall WH

    更新日期:2011-02-28 00:00:00

  • A joint test for progression and survival with interval-censored data from a cancer clinical trial.

    abstract::Clinical trials often assess efficacy by comparing treatments on the basis of two or more event-time outcomes. In the case of cancer clinical trials, progression-free survival (PFS), which is the minimum of the time from randomization to progression or to death, summarizes the comparison of treatments on the hazards f...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.6096

    authors: Finkelstein DM,Schoenfeld DA

    更新日期:2014-05-30 00:00:00

  • Bayesian modelling of imperfect ascertainment methods in cancer studies.

    abstract::Tumour registry linkage, chart review and patient self-report are all commonly used ascertainment methods in cancer epidemiology. These methods are used for estimating the incidence or prevalence of different cancer types in a population, and for investigating the effects of possible risk factors for cancer. Tumour re...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.2116

    authors: Bernatsky S,Joseph L,Bélisle P,Boivin JF,Rajan R,Moore A,Clarke A

    更新日期:2005-08-15 00:00:00

  • Doubly robust generalized estimating equations for longitudinal data.

    abstract::A popular method for analysing repeated-measures data is generalized estimating equations (GEE). When response data are missing at random (MAR), two modifications of GEE use inverse-probability weighting and imputation. The weighted GEE (WGEE) method involves weighting observations by their inverse probability of bein...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.3520

    authors: Seaman S,Copas A

    更新日期:2009-03-15 00:00:00

  • Integrating multiple-domain rules for disease classification.

    abstract::In psychiatry, clinicians use criteria sets from the Diagnostic and Statistical Manual of Mental Disorders to diagnose mental disorders. Most criteria sets have several symptom domains, and in order to be diagnosed, an individual must meet the minimum number of symptoms required by each domain. Some efforts are now fo...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.8173

    authors: Mauro C,Shear MK,Wang Y

    更新日期:2019-07-20 00:00:00

  • There is no impact of exposure measurement error on latency estimation in linear models.

    abstract::Identification of the latency period for the effect of a time-varying exposure is key when assessing many environmental, nutritional, and behavioral risk factors. A pre-specified exposure metric involving an unknown latency parameter is often used in the statistical model for the exposure-disease relationship. Likelih...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.8038

    authors: Peskoe SB,Spiegelman D,Wang M

    更新日期:2019-03-30 00:00:00

  • Composite sequential Monte Carlo test for post-market vaccine safety surveillance.

    abstract::Group sequential hypothesis testing is now widely used to analyze prospective data. If Monte Carlo simulation is used to construct the signaling threshold, the challenge is how to manage the type I error probability for each one of the multiple tests without losing control on the overall significance level. This paper...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.6805

    authors: Silva IR

    更新日期:2016-04-30 00:00:00

  • Weighted multiple testing correction for correlated tests.

    abstract::Virtually all clinical trials collect multiple endpoints that are usually correlated. Many methods have been proposed to control the family-wise type I error rate (FWER), but these methods often disregard the correlation among the endpoints, such as the commonly used Bonferroni correction, Holm procedure, Wiens' Bonfe...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4434

    authors: Xie C

    更新日期:2012-02-20 00:00:00

  • Group sequential designs for clinical trials with bivariate endpoints.

    abstract::Although all clinical trials are designed and monitored using more than one endpoint, methods are needed to assure that decision criteria are chosen to reflect the clinically relevant tradeoffs that assure the trial's scientific integrity. This article presents a framework for the design and monitoring clinical trials...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.8696

    authors: Hu J,Blatchford PJ,Goldenberg NA,Kittelson JM

    更新日期:2020-11-20 00:00:00

  • A score test for establishing non-inferiority with respect to short-term survival in two-sample comparisons with identical proportions of long-term survivors.

    abstract::In recent years randomized trials designed to establish non-inferiority of a new treatment as compared to a standard one have been more widely used. Two-sample statistics have been proposed for this equivalence testing problem. However, they are not suited to situations where a long-term survivor fraction is expected....

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.1453

    authors: Broët P,Tubert-Bitter P,De Rycke Y,Moreau T

    更新日期:2003-03-30 00:00:00

  • Network-based regularization for matched case-control analysis of high-dimensional DNA methylation data.

    abstract::The matched case-control designs are commonly used to control for potential confounding factors in genetic epidemiology studies especially epigenetic studies with DNA methylation. Compared with unmatched case-control studies with high-dimensional genomic or epigenetic data, there have been few variable selection metho...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.5694

    authors: Sun H,Wang S

    更新日期:2013-05-30 00:00:00

  • Inference for multimarker adaptive enrichment trials.

    abstract::Identification of treatment selection biomarkers has become very important in cancer drug development. Adaptive enrichment designs have been developed for situations where a unique treatment selection biomarker is not apparent based on the mechanism of action of the drug. With such designs, the eligibility rules may b...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.7422

    authors: Simon R,Simon N

    更新日期:2017-11-20 00:00:00

  • A random forest approach for competing risks based on pseudo-values.

    abstract::Random forest is a supervised learning method that combines many classification or regression trees for prediction. Here we describe an extension of the random forest method for building event risk prediction models in survival analysis with competing risks. In case of right-censored data, the event status at the pred...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.5775

    authors: Mogensen UB,Gerds TA

    更新日期:2013-08-15 00:00:00

  • Marker values at the time of an AIDS diagnosis.

    abstract::In this paper statistical methods are proposed to estimate the distribution of a CD4 T-cell number at the time of a clinical AIDS endpoint from serial measurements of CD4 T-cell values in a cohort study. The statistical formulation of the problem is that of survival analysis with interval censored data, but in which t...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780131915

    authors: Taylor JM,Kim DK

    更新日期:1994-10-15 00:00:00

  • Methodological pitfalls in the analysis of contraceptive failure.

    abstract::Although the literature on contraceptive failure is vast and is expanding rapidly, our understanding of the relative efficacy of methods is quite limited because of defects in the research design and in the analytical tools used by investigators. Errors in the literature range from simple arithmetical mistakes to outr...

    journal_title:Statistics in medicine

    pub_type: 杂志文章,评审

    doi:10.1002/sim.4780100206

    authors: Trussell J

    更新日期:1991-02-01 00:00:00

  • Two-stage testing using selection schemes.

    abstract::In this paper, we consider pooling schemes in which samples are to be tested in two-stages. We show that when batch size is limited as well as pool size, selection schemes tend to be more efficient and flexible. Formulae for the efficiencies of square arrays in all dimensions and for all selection schemes are given in...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.3965

    authors: Sudbury A

    更新日期:2010-09-20 00:00:00

  • Randomization tests for multiarmed randomized clinical trials.

    abstract::We examine the use of randomization-based inference for analyzing multiarmed randomized clinical trials, including the application of conditional randomization tests to multiple comparisons. The view is taken that the linkage of the statistical test to the experimental design (randomization procedure) should be recogn...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.8418

    authors: Wang Y,Rosenberger WF,Uschner D

    更新日期:2020-02-20 00:00:00

  • Exact unconditional tables for significance testing in the 2 x 2 multinomial trial.

    abstract::This paper presents tables analogous to T-tables for use in the 2 x 2 multinomial trial, where the continuity corrected Z-statistic is used to make exact unconditional inference. This is the first solution of a discrete exact unconditional inference problem involving a multivariate nuisance parameter for which no anci...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780110708

    authors: Shuster JJ

    更新日期:1992-05-01 00:00:00

  • A cluster model for space-time disease counts.

    abstract::Modelling disease clustering over space and time can be helpful in providing indications of possible exposures and planning corresponding public health practices. Though a considerable number of studies focus on modelling spatio-temporal patterns of disease, most of them do not directly model a spatio-temporal cluster...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.2424

    authors: Yan P,Clayton MK

    更新日期:2006-03-15 00:00:00

  • On choosing the number of interim analyses in clinical trials.

    abstract::Small but important therapeutic effects of new treatments can be most efficiently detected through the study of large randomized prospective series of patients. Such large scale clinical trials are nowadays commonplace. The alternative is years of polemic and debate surrounding several trials each too small to detect ...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780010105

    authors: McPherson K

    更新日期:1982-01-01 00:00:00

  • The analysis of continuous outcomes in multi-centre trials with small centre sizes.

    abstract::The standard analysis of clinical trials stratified by centre is to include centres as fixed effects, but if many centres contribute small numbers of patients, this approach results in a loss of power. Assuming no treatment by centre interaction, we used simulation to examine power and coverage of confidence intervals...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.3068

    authors: Pickering RM,Weatherall M

    更新日期:2007-12-30 00:00:00

  • Bayesian joint ordinal and survival modeling for breast cancer risk assessment.

    abstract::We propose a joint model to analyze the structure and intensity of the association between longitudinal measurements of an ordinal marker and time to a relevant event. The longitudinal process is defined in terms of a proportional-odds cumulative logit model. Time-to-event is modeled through a left-truncated proportio...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.7065

    authors: Armero C,Forné C,Rué M,Forte A,Perpiñán H,Gómez G,Baré M

    更新日期:2016-12-10 00:00:00

  • Nonparametric regression of state occupation, entry, exit, and waiting times with multistate right-censored data.

    abstract::We construct nonparametric regression estimators of a number of temporal functions in a multistate system based on a continuous univariate baseline covariate. These estimators include state occupation probabilities, state entry, exit, and waiting (sojourn) time distribution functions of a general progressive (e.g., ac...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.5703

    authors: Mostajabi F,Datta S

    更新日期:2013-07-30 00:00:00

  • A threshold-free summary index of prediction accuracy for censored time to event data.

    abstract::Prediction performance of a risk scoring system needs to be carefully assessed before its adoption in clinical practice. Clinical preventive care often uses risk scores to screen asymptomatic population. The primary clinical interest is to predict the risk of having an event by a prespecified future time t0 . Accuracy...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.7606

    authors: Yuan Y,Zhou QM,Li B,Cai H,Chow EJ,Armstrong GT

    更新日期:2018-05-10 00:00:00

  • Compliance with quality of life data collection in the National Surgical Adjuvant Breast and Bowel Project (NSABP) Breast Cancer Prevention Trial.

    abstract::This paper describes compliance with the completion of a quality of life questionnaire in the Breast Cancer Prevention Trial, a large multi-centre randomized trial that is studying the efficacy of Tamoxifen in preventing breast cancer. In the first 4875 women enrolled in the control arm of the study, there was a very ...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/(sici)1097-0258(19980315/15)17:5/7<613::ai

    authors: Ganz PA,Day R,Costantino J

    更新日期:1998-03-15 00:00:00

  • Random-effects meta-analysis of the clinical utility of tests and prediction models.

    abstract::The use of data from multiple studies or centers for the validation of a clinical test or a multivariable prediction model allows researchers to investigate the test's/model's performance in multiple settings and populations. Recently, meta-analytic techniques have been proposed to summarize discrimination and calibra...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.7653

    authors: Wynants L,Riley RD,Timmerman D,Van Calster B

    更新日期:2018-05-30 00:00:00

  • Risk-adjusted CUSUM charts under model error.

    abstract::In recent years, quality control charts have been increasingly applied in the healthcare environment, for example, to monitor surgical performance. Risk-adjusted cumulative (CUSUM) charts that utilize risk scores like the Parsonnet score to estimate the probability of death of a patient from an operation turn out to b...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.8104

    authors: Knoth S,Wittenberg P,Gan FF

    更新日期:2019-05-30 00:00:00

  • Biostatistical concepts and methods in the legal setting.

    abstract::Biostatistical concepts and methods apply to various problems arising in actual U.S. legal cases. These involve: measures of association, assessing the potential effect of omitted variables and the Peters-Belson approach to regression. In particular, we present the inapplicability of Fisher's exact test in the case wh...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780141505

    authors: Gastwirth JL,Greenhouse SW

    更新日期:1995-08-15 00:00:00