Rice tissue-specific promoters and condition-dependent promoters for effective translational application.

Abstract:

:Rice (Oryza sativa) is one of the most important staple food crops for more than half of the world's population. The demand is increasing for food security because of population growth and environmental challenges triggered by climate changes. This scenario has led to more interest in developing crops with greater productivity and sustainability. The process of genetic transformation, a major tool for crop improvement, utilizes promoters as one of its key elements. Those promoters are generally divided into three types: constitutive, spatiotemporal, and condition-dependent. Transcriptional control of a constitutive promoter often leads to reduced plant growth, due to a negative effect of accumulated molecules during cellular functions or energy consumption. To maximize the effect of a transgene on transgenic plants, it is better to use condition-dependent or tissue-specific promoters. However, until now, those types have not been as widely applied in crop biotechnology. In this review, we introduce and discuss four groups of tissue-specific promoters (50 promoters in total) and six groups of condition-dependent promoters (27 promoters). These promoters can be utilized to fine-tune desirable agronomic traits and develop crops with tolerance to various stresses, enhanced nutritional value, and advanced productivity.

journal_name

J Integr Plant Biol

authors

Jeong HJ,Jung KH

doi

10.1111/jipb.12362

subject

Has Abstract

pub_date

2015-11-01 00:00:00

pages

913-24

issue

11

eissn

1672-9072

issn

1744-7909

journal_volume

57

pub_type

杂志文章,评审
  • Characters of DNA constitution in the rye B chromosome.

    abstract::We have used chromosome microdissection and microcloning to construct a DNA library of the entire B chromosome (B) of rye. New rye B-specific sequences have been screened from this pool, blasted with other sequences and analyzed to elucidate the characters of DNA constitution and the possible pathway of the origin of ...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/j.1744-7909.2007.00588.x

    authors: Long H,Qi ZX,Sun XM,Chen CB,Li XL,Song WQ,Chen RY

    更新日期:2008-02-01 00:00:00

  • OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae.

    abstract::Somatic embryogenesis receptor kinase (SERK) proteins play pivotal roles in regulation of plant development and immunity. The rice genome contains two SERK genes, OsSerk1 and OsSerk2. We previously demonstrated that OsSerk2 is required for rice Xa21-mediated resistance to Xanthomonas oryzae pv. oryzae (Xoo) and for no...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/jipb.12290

    authors: Zuo S,Zhou X,Chen M,Zhang S,Schwessinger B,Ruan D,Yuan C,Wang J,Chen X,Ronald PC

    更新日期:2014-12-01 00:00:00

  • The endoplasmic reticulum: a dynamic and well-connected organelle.

    abstract::The endoplasmic reticulum forms the first compartment in a series of organelles which comprise the secretory pathway. It takes the form of an extremely dynamic and pleomorphic membrane-bounded network of tubules and cisternae which have numerous different cellular functions. In this review, we discuss the nature of en...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章,评审

    doi:10.1111/jipb.12297

    authors: Hawes C,Kiviniemi P,Kriechbaumer V

    更新日期:2015-01-01 00:00:00

  • Improved oxidative tolerance in suspension-cultured cells of C4-pepctransgenic rice by H2O2 and Ca(2+) under PEG-6000.

    abstract::To understand the molecular responses of PC (Overexpressing the maize C4-pepc gene, which encodes phosphoenolpyruvate carboxylase (PEPC)), to drought stress at cell level, we analyzed changes in the levels of signaling molecules (hydrogen peroxide (H2O2), calcium ion (Ca(2+)), and nitric oxide (NO)) in suspension-cult...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/jipb.12283

    authors: Qian B,Li X,Liu X,Wang M

    更新日期:2015-06-01 00:00:00

  • Loss-of-function mutation of rice SLAC7 decreases chloroplast stability and induces a photoprotection mechanism in rice.

    abstract::Plants absorb sunlight to power the photochemical reactions of photosynthesis, which can potentially damage the photosynthetic machinery. However, the mechanism that protects chloroplasts from the damage remains unclear. In this work, we demonstrated that rice (Oryza sativa L.) SLAC7 is a generally expressed membrane ...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/jipb.12350

    authors: Fan X,Wu J,Chen T,Tie W,Chen H,Zhou F,Lin Y

    更新日期:2015-12-01 00:00:00

  • Ethylene promotes seed iron storage during Arabidopsis seed maturation via ERF95 transcription factor.

    abstract::Because Iron (Fe) is an essential element, Fe storage in plant seeds is necessary for seedling establishment following germination. However, the mechanisms controlling seed Fe storage during seed development remain largely unknown. Here we reveal that an ERF95 transcription factor regulates Arabidopsis seed Fe accumul...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/jipb.12986

    authors: Sun Y,Li JQ,Yan JY,Yuan JJ,Li GX,Wu YR,Xu JM,Huang RF,Harberd NP,Ding ZJ,Zheng SJ

    更新日期:2020-08-01 00:00:00

  • Analysis of the Arabidopsis floral proteome: detection of over 2 000 proteins and evidence for posttranslational modifications.

    abstract::The proteome of the Arabidopsis flower has not been extensively studied previously. Here, we report a proteomic analysis of the wild type Arabidopsis flower. Using both two-dimensional electrophoresis/mass spectrometry (2-DGE/MS) and multi-dimensional protein identification technology (MudPIT) approaches, we identifie...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/j.1744-7909.2008.00787.x

    authors: Feng B,Li L,Zhou X,Stanley B,Ma H

    更新日期:2009-02-01 00:00:00

  • COR27 and COR28 encode nighttime repressors integrating Arabidopsis circadian clock and cold response.

    abstract::It was noted that circadian components function in plant adaptation to diurnal temperature cycles and freezing tolerance. Our genome-wide transcriptome analysis revealed that evening-phased COR27 and COR28 mainly repress the transcription of clock-associated evening genes PRR5, ELF4 and cold-responsive genes. Chromati...

    journal_title:Journal of integrative plant biology

    pub_type: 信件

    doi:10.1111/jipb.12512

    authors: Wang P,Cui X,Zhao C,Shi L,Zhang G,Sun F,Cao X,Yuan L,Xie Q,Xu X

    更新日期:2017-02-01 00:00:00

  • Plant phosphatidylinositol-specific phospholipase C at the center of plant innate immunity.

    abstract::Understanding plant resistance to pathogenic microbes requires detailed information on the molecular mechanisms controlling the execution of plant innate immune responses. A growing body of evidence places phosphoinositide-specific phospholipase C (PI-PLC) enzymes immediately downstream of activated immune receptors, ...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章,评审

    doi:10.1111/jipb.12520

    authors: Abd-El-Haliem AM,Joosten MH

    更新日期:2017-03-01 00:00:00

  • The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice.

    abstract::C(2) H(2) -type zinc finger proteins (ZFPs) are thought to play important roles in modulating the responses of plants to drought, salinity and oxidative stress. However, direct evidence is lacking for the involvement of these ZFPs in abscisic acid (ABA)-induced antioxidant defense in plants. In this study, the role of...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/j.1744-7909.2012.01135.x

    authors: Zhang H,Ni L,Liu Y,Wang Y,Zhang A,Tan M,Jiang M

    更新日期:2012-07-01 00:00:00

  • Negative regulation of resistance protein-mediated immunity by master transcription factors SARD1 and CBP60g.

    abstract::Salicylic acid (SA) is an essential defence hormone in plants. Upon pathogen infection, induced biosynthesis of SA is mediated by Isochorismate synthase 1 (ICS1), whose gene transcription is controlled mainly through two redundant transcription factors, SAR Deficient 1 (SARD1) and Calmodulin-binding protein 60-like g ...

    journal_title:Journal of integrative plant biology

    pub_type: 信件

    doi:10.1111/jipb.12698

    authors: Sun T,Liang W,Zhang Y,Li X

    更新日期:2018-11-01 00:00:00

  • OTS1-dependent deSUMOylation increases tolerance to high copper levels in Arabidopsis.

    abstract::The conjugation of SUMO (small ubiquitin-like modifier) to protein substrates is a reversible process (SUMOylation/deSUMOylation) that regulates plant development and stress responses. The essential metal copper (Cu) is required for normal plant growth, but excess amounts are toxic. The SUMO E3 ligase, SIZ1, and SIZ1-...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/jipb.12618

    authors: Zhan E,Zhou H,Li S,Liu L,Tan T,Lin H

    更新日期:2018-04-01 00:00:00

  • Effects of transgenic soybean on growth and phosphorus acquisition in mixed culture system.

    abstract::Transgenic soybean plants overexpressing the Arabidopsis purple acid phosphatase gene AtPAP15 (OXp) or the soybean expansin gene GmEXPB2 (OXe) can improve phosphorous (P) efficiency in pure culture by increasing Apase secretion or changing root morphology. In this study, soybean-soybean mixed cultures were employed to...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/jipb.12243

    authors: Xie J,Zhou J,Wang X,Liao H

    更新日期:2015-05-01 00:00:00

  • Sucrose transporter2 contributes to maize growth, development, and crop yield.

    abstract::During daylight, plants produce excess photosynthates, including sucrose, which is temporarily stored in the vacuole. At night, plants remobilize sucrose to sustain metabolism and growth. Based on homology to other sucrose transporter (SUT) proteins, we hypothesized the maize (Zea mays) SUCROSE TRANSPORTER2 (ZmSUT2) p...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/jipb.12527

    authors: Leach KA,Tran TM,Slewinski TL,Meeley RB,Braun DM

    更新日期:2017-06-01 00:00:00

  • Development and utilization of a new chemically-induced soybean library with a high mutation density .

    abstract::Mutagenized populations have provided important materials for introducing variation and identifying gene function in plants. In this study, an ethyl methanesulfonate (EMS)-induced soybean (Glycine max) population, consisting of 21,600 independent M2 lines, was developed. Over 1,000 M4 (5) families, with diverse abnorm...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/jipb.12505

    authors: Li Z,Jiang L,Ma Y,Wei Z,Hong H,Liu Z,Lei J,Liu Y,Guan R,Guo Y,Jin L,Zhang L,Li Y,Ren Y,He W,Liu M,Htwe NM,Liu L,Guo B,Song J,Tan B,Liu G,Li M,Zhang X,Liu B,Shi X,Han S,Hua S,Zhou F,Yu L,Li Y,

    更新日期:2017-01-01 00:00:00

  • Soybean AP1 homologs control flowering time and plant height.

    abstract::Flowering time and plant height are key agronomic traits that directly affect soybean (Glycine max) yield. APETALA1 (AP1) functions as a class A gene in the ABCE model for floral organ development, helping to specify carpel, stamen, petal, and sepal identities. There are four AP1 homologs in soybean, all of which are ...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/jipb.12988

    authors: Chen L,Nan H,Kong L,Yue L,Yang H,Zhao Q,Fang C,Li H,Cheng Q,Lu S,Kong F,Liu B,Dong L

    更新日期:2020-12-01 00:00:00

  • Comparison analysis of transcripts from the halophyte Thellungiella halophila.

    abstract::The Brassicaceae family halophyte Thellungiella halophila has a high salinity tolerance and serves as a valuable halophytic genetic model plant with experimental convenience similar to Arabidopsis thaliana. A cDNA library of Thellungiella was generated from salt-treated seedlings including rosettes and roots. More tha...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/j.1744-7909.2008.00740.x

    authors: Zhang Y,Lai J,Sun S,Li Y,Liu Y,Liang L,Chen M,Xie Q

    更新日期:2008-10-01 00:00:00

  • Relationship between the virtual dynamic thinning line and the self-thinning boundary line in simulated plant populations.

    abstract::The self-thinning rule defines a straight upper boundary line on log-log scales for all possible combinations of mean individual biomass and density in plant populations. Recently, the traditional slope of the upper boundary line, -3/2, has been challenged by -4/3 which is deduced from some new mechanical theories, li...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/j.1744-7909.2007.00618.x

    authors: Chen K,Kang HM,Bai J,Fang XW,Wang G

    更新日期:2008-03-01 00:00:00

  • Cell polarity: Regulators and mechanisms in plants.

    abstract::Cell polarity plays an important role in a wide range of biological processes in plant growth and development. Cell polarity is manifested as the asymmetric distribution of molecules, for example, proteins and lipids, at the plasma membrane and/or inside of a cell. Here, we summarize a few polarized proteins that have...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章,评审

    doi:10.1111/jipb.12904

    authors: Yang K,Wang L,Le J,Dong J

    更新日期:2020-01-01 00:00:00

  • Subcellular localizations of AS1 and AS2 suggest their common and distinct roles in plant development.

    abstract::During leaf organogenesis, a critical step for normal leaf primordium initiation is the repression of the class 1 KNOTTED1-like homeobox (KNOX) genes. After leaf primordia are formed, they must establish polarity for normal leaf morphogenesis. Recent studies have led to the identification of a number of genes that par...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/j.1744-7909.2008.00693.x

    authors: Zhu Y,Li Z,Xu B,Li H,Wang L,Dong A,Huang H

    更新日期:2008-07-01 00:00:00

  • Haplotype variation of Green Revolution gene Rht-D1 during wheat domestication and improvement.

    abstract::Green Revolution made a substantial contribution to wheat yields worldwide in the 1960s and 1970s. It is of great importance to analyze the haplotype variation of Rht-D1, the Green Revolution gene, during wheat (Triticum aestivum L.) domestication and breeding to understand its evolution and function in wheat breeding...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/jipb.12197

    authors: Zhang C,Gao L,Sun J,Jia J,Ren Z

    更新日期:2014-08-01 00:00:00

  • Reactive oxygen species signaling and stomatal movement in plant responses to drought stress and pathogen attack.

    abstract::Stomata, the pores formed by a pair of guard cells, are the main gateways for water transpiration and photosynthetic CO2 exchange, as well as pathogen invasion in land plants. Guard cell movement is regulated by a combination of environmental factors, including water status, light, CO2 levels and pathogen attack, as w...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章,评审

    doi:10.1111/jipb.12654

    authors: Qi J,Song CP,Wang B,Zhou J,Kangasjärvi J,Zhu JK,Gong Z

    更新日期:2018-09-01 00:00:00

  • Arabidopsis acetyl-amido synthetase GH3.5 involvement in camalexin biosynthesis through conjugation of indole-3-carboxylic acid and cysteine and upregulation of camalexin biosynthesis genes.

    abstract::Camalexin (3-thiazol-2'-yl-indole) is the major phytoalexin found in Arabidopsis thaliana. Several key intermediates and corresponding enzymes have been identified in camalexin biosynthesis through mutant screening and biochemical experiments. Camalexin is formed when indole-3-acetonitrile (IAN) is catalyzed by the cy...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/j.1744-7909.2012.01131.x

    authors: Wang MY,Liu XT,Chen Y,Xu XJ,Yu B,Zhang SQ,Li Q,He ZH

    更新日期:2012-07-01 00:00:00

  • Quantitative trait loci mapping of dark-induced senescence in winter wheat (Triticum aestivum).

    abstract::In order to explore the genetics of dark-induced senescence in winter wheat (Triticum aestivum L.), a quantitative trait loci (QTL) analysis was carried out in a doubled haploid population developed from a cross between the varieties Hanxuan 10 (HX) and Lumai 14 (LM). The senescence parameters chlorophyll content (Chl...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/j.1744-7909.2011.01088.x

    authors: Li H,Lin F,Wang G,Jing R,Zheng Q,Li B,Li Z

    更新日期:2012-01-01 00:00:00

  • High-throughput phenotyping and genomic selection: the frontiers of crop breeding converge.

    abstract::Genomic selection (GS) and high-throughput phenotyping have recently been captivating the interest of the crop breeding community from both the public and private sectors world-wide. Both approaches promise to revolutionize the prediction of complex traits, including growth, yield and adaptation to stress. Whereas hig...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1744-7909.2012.01116.x

    authors: Cabrera-Bosquet L,Crossa J,von Zitzewitz J,Serret MD,Araus JL

    更新日期:2012-05-01 00:00:00

  • Genome-wide association study of callus induction variation to explore the callus formation mechanism of rice.

    abstract::Rice (Oryza sativa) is one of the most widely cultivated food crops, worldwide. Tissue culture is extensively used in rice breeding and functional genome research. The ability to induce callus determines whether a particular rice variety can be subjected to tissue culture and Agrobacterium-mediated transformation. Ove...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/jipb.12759

    authors: Zhang Z,Zhao H,Li W,Wu J,Zhou Z,Zhou F,Chen H,Lin Y

    更新日期:2019-11-01 00:00:00

  • Construction and application of efficient Ac-Ds transposon tagging vectors in rice.

    abstract::Transposons are effective mutagens alternative to T-DNA for the generation of insertional mutants in many plant species including those whose transformation is inefficient. The current strategies of transposon tagging are usually slow and labor-intensive and yield low frequency of tagged lines. We have constructed a s...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/j.1744-7909.2009.00870.x

    authors: Qu S,Jeon JS,Ouwerkerk PB,Bellizzi M,Leach J,Ronald P,Wang GL

    更新日期:2009-11-01 00:00:00

  • Loss of algal Proton Gradient Regulation 5 increases reactive oxygen species scavenging and H2 evolution.

    abstract::We have identified hpm91, a Chlamydomonas mutant lacking Proton Gradient Regulation5 (PGR5) capable of producing hydrogen (H2 ) for 25 days with more than 30-fold yield increase compared to wild type. Thus, hpm91 displays a higher capacity of H2 production than a previously characterized pgr5 mutant. Physiological and...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/jipb.12502

    authors: Chen M,Zhang J,Zhao L,Xing J,Peng L,Kuang T,Rochaix JD,Huang F

    更新日期:2016-12-01 00:00:00

  • The rice OsV4 encoding a novel pentatricopeptide repeat protein is required for chloroplast development during the early leaf stage under cold stress.

    abstract::Pentatricopeptide repeat (PPR) proteins, characterized by tandem arrays of a 35 amino acid motif, have been suggested to play central and broad roles in modulating the expression of organelle genes in plants. However, the molecular mechanisms of most rice PPR genes remains unclear. In this paper, we isolated and chara...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/jipb.12138

    authors: Gong X,Su Q,Lin D,Jiang Q,Xu J,Zhang J,Teng S,Dong Y

    更新日期:2014-04-01 00:00:00

  • Modeling size-number distributions of seeds for use in soil bank studies.

    abstract::Knowledge of soil seed banks is essential to understand the dynamics of plant populations and communities and would greatly benefit from the integration of existing knowledge on ecological correlations of seed size and shape. The present study aims to establish a feasible and meaningful method to describe size-number ...

    journal_title:Journal of integrative plant biology

    pub_type: 杂志文章

    doi:10.1111/j.1744-7909.2008.00659.x

    authors: Casco H,Dias AS,Dias LS

    更新日期:2008-05-01 00:00:00