RNAlater® is a viable storage option for avian influenza sampling in logistically challenging conditions.

Abstract:

:Surveillance of wild birds is critical in monitoring for highly pathogenic avian influenza A viruses (AIVs). However, a successful surveillance regime requires proper treatment of samples in the field - rapid placement of samples in -80°C and subsequent maintenance of cold-chain. Given the logistical difficulties of this, many avian taxa and/or geographic locations are not sampled, or, when sampled may result in false negatives due to poor sample treatment in the field. Here, we assessed the utility of RNAlater® as a stabilization agent for AIV sampling. We found no difference in real time PCR performance between virus transport media at optimal conditions and RNAlater® at -80°C, -20°C, 4°C or room temperature up to two weeks, at either low or high virus load. Not only was RNAlater® useful in comparison of spiked samples or those from duck experiments, it was employed successfully in a field study of backyard birds in China. We detected AIV in cloacal and oropharyngeal samples from chickens and a sample with a low Cq was successfully subtyped as H9, although sample storage conditions were suboptimal. Thus, despite limitations in downstream characterization such virus isolation and typing, RNAlater® is a viable option for AIV sampling under logistically challenging circumstances.

journal_name

J Virol Methods

authors

Wille M,Yin H,Lundkvist Å,Xu J,Muradrasoli S,Järhult JD

doi

10.1016/j.jviromet.2017.11.004

subject

Has Abstract

pub_date

2018-02-01 00:00:00

pages

32-36

eissn

0166-0934

issn

1879-0984

pii

S0166-0934(17)30494-9

journal_volume

252

pub_type

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