Complete mitochondrial genome of Camponotus atrox (Hymenoptera: Formicidae): a new tRNA arrangement in Hymenoptera.

Abstract:

:We sequenced the complete mitochondrial (mt) genome of Camponotus atrox (Hymenoptera: Formicidae), which is only distributed in Korea. The genome was 16 540 bp in size and contained typical sets of genes (13 protein-coding genes, 22 tRNAs, and 2 rRNAs). The C. atrox A+T-rich region, at 1402 bp, was the longest of all sequenced ant genomes and was composed of an identical tandem repeat consisting of six 100-bp copies and one 96-bp copy. A total of 315 bp of intergenic spacer sequence was spread over 23 regions. An alignment of the spacer sequences in ants was largely feasible among congeneric species, and there was substantial sequence divergence, indicating their potential use as molecular markers for congeneric species. The A/T contents at the first and second codon positions of protein-coding genes (PCGs) were similar for ant species, including C. atrox (73.9% vs. 72.3%, on average). With increased taxon sampling among hymenopteran superfamilies, differences in the divergence rates (i.e., the non-synonymous substitution rates) between the suborders Symphyta and Apocrita were detected, consistent with previous results. The C. atrox mt genome had a unique gene arrangement, trnI-trnM-trnQ, at the A+T-rich region and ND2 junction (underline indicates inverted gene). This may have originated from a tandem duplication of trnM-trnI, resulting in trnM-trnI-trnM-trnI-trnQ, and the subsequent loss of the first trnM and second trnI, resulting in trnI-trnM-trnQ.

journal_name

Genome

journal_title

Genome

authors

Kim MJ,Hong EJ,Kim I

doi

10.1139/gen-2015-0080

subject

Has Abstract

pub_date

2016-01-01 00:00:00

pages

59-74

issue

1

eissn

0831-2796

issn

1480-3321

journal_volume

59

pub_type

杂志文章

相关文献

GENOME文献大全
  • Integration of molecular and classical linkage groups of the silkworm, Bombyx mori (n = 28).

    abstract::Previously published linkage groups (LGs) composed of molecular markers were assigned to classical LGs in the silkworm, Bombyx mori (n = 28). Four markers from the classical linkage map, og, w-1, Lp, and Pfl, were assigned to the molecular linkage maps using sequence tagged sites. In addition, linkage analysis was car...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g05-023

    authors: Yasukochi Y,Banno Y,Yamamoto K,Goldsmith MR,Fujii H

    更新日期:2005-08-01 00:00:00

  • Soybean genomic survey: BAC-end sequences near RFLP and SSR markers.

    abstract::We are building a framework physical infrastructure across the soybean genome by using SSR (simple sequence repeat) and RFLP (restriction fragment length polymorphism) markers to identify BACs (bacterial artificial chromosomes) from two soybean BAC libraries. The libraries were prepared from two genotypes, each digest...

    journal_title:Genome

    pub_type: 杂志文章

    doi:

    authors: Marek LF,Mudge J,Darnielle L,Grant D,Hanson N,Paz M,Huihuang Y,Denny R,Larson K,Foster-Hartnett D,Cooper A,Danesh D,Larsen D,Schmidt T,Staggs R,Crow JA,Retzel E,Young ND,Shoemaker RC

    更新日期:2001-08-01 00:00:00

  • Families of repeated DNA in the oomycete Phytophthora infestans and their distribution within the genus.

    abstract::The abundance, genomic organization, species distribution, and structure of 33 distinct families of repetitive DNA in Phytophthora are described. The families were identified by screening a library of Phytophthora infestans DNA for repetitive sequences. These was subsequently characterized within 26 species distribute...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g98-060

    authors: Judelson HS,Randall TA

    更新日期:1998-08-01 00:00:00

  • Genetic and cytogenetic analyses of the A genome of Triticum monococcum. IX. Cytological behaviour, phenotypic characteristics, breeding behaviour, and fertility of primary, double, and triple trisomics.

    abstract::Cytogenetic studies in Triticum monococcum (2n = 2x = 14, AA) were initiated by generating a series of primary as well as double and triple trisomics from autotriploids derived from crosses between induced autotetraploids and a diploid progenitor. Analysis of meiotic chromosome behaviour revealed that, with the except...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g93-077

    authors: Kim NS,Kuspira J

    更新日期:1993-06-01 00:00:00

  • The orphan nuclear receptor DHR38 influences transcription of the DOPA decarboxylase gene in epidermal and neural tissues of Drosophila melanogaster.

    abstract::The DOPA decarboxylase gene (Ddc) belongs to the "early-late" class of ecdysone-inducible genes in Drosophila melanogaster. Its expression is up-regulated in epidermal tissues by the ecdysone receptor acting through a response element, EcRE. In this paper, we show that another member of the nuclear receptor superfamil...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g07-084

    authors: Davis MM,Yang P,Chen L,O'Keefe SL,Hodgetts RB

    更新日期:2007-11-01 00:00:00

  • Introgression analysis of an interspecific hybrid population in peanuts (Arachis hypogaea L.) using RFLP and RAPD markers.

    abstract::Forty-six introgression lines (F10C9) from a cross between Arachis hypogaea L. (2n = 4x = 40) and A. cardenasii Krapov. & W. C. Gregory (2n = 2x = 20) were analyzed for the introgression of A. cardenasii chromosome segments. Seventy-three RFLP probes and 70 RAPD primers, expressing from one to four A. cardenasii-speci...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g95-021

    authors: Garcia GM,Stalker HT,Kochert G

    更新日期:1995-02-01 00:00:00

  • Intra-species DNA polymorphism in the tobacco cyst-nematode complex (Globodera tabacum) using AFLP.

    abstract::Amplified fragment length polymorphism (AFLP) was used to obtain information on the within-species genetic variability of the tobacco cyst-nematode (TCN) complex. AFLP was found to be well suited to this type of study. The current classification of TCN was confirmed. Results indicate that the Globodera tabacum solanac...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g01-091

    authors: Marché L,Valette S,Grenier E,Mugniéry D

    更新日期:2001-12-01 00:00:00

  • A search for diagnostic AFLP markers in Cichorium species with emphasis on endive and chicory cultivar groups.

    abstract::The genus Cichorium consists of two widely cultivated species C. intybus (chicory) and C. endivia (endive) and four wild species, C. bottae, C. spinosum, C. calvum, and C. pumilum. A multivariate and an UPGMA (unweighted pair group method average) analysis based on AFLP (amplified fragment length polymorphism) markers...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g00-024

    authors: Kiers AM,Mes TH,van der Meijden R,Bachmann K

    更新日期:2000-06-01 00:00:00

  • Mapping of genes expressed in Fusarium graminearum-infected heads of wheat cultivar 'Frontana'.

    abstract::The isolation, physical, and genetic mapping of a group of wheat genes expressed in infected heads of Triticum aestivum 'Frontana' resistant to Fusarium head blight is reported. A cDNA library was built from heads of 'Frontana' through suppressive subtractive hybridization, to enrich for sequences induced by the patho...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g04-098

    authors: Han FP,Fedak G,Ouellet T,Dan H,Somers DJ

    更新日期:2005-02-01 00:00:00

  • Construction of a genetic linkage map in celery using DNA-based markers.

    abstract::A F2 population of two celery cultivated types (Apium graveolens L. var. rapaceum and A. graveolens L. var. secalinum) was used to construct a linkage map consisting of 29 RFLP (restriction fragment length polymorphism), 100 RAPD (random amplified polymorphic DNA), four isozyme, one disease resistance, and one growth ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g95-005

    authors: Yang X,Quiros CF

    更新日期:1995-02-01 00:00:00

  • S1 satellite DNA as a taxonomic marker in brown frogs: molecular evidence that Rana graeca graeca and Rana graeca italica are different species.

    abstract::The brown frog Rana graeca was believed to be present in two areas, the Balkan Peninsula and the Italian Apennines. We have characterised the S1 satellite DNA family from Rana graeca graeca and compared it with that of Rana graeca italica. On Southern blots, the patterns of S1 satellite DNA bands are very different be...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g01-125

    authors: Picariello O,Feliciello I,Bellinello R,Chinali G

    更新日期:2002-02-01 00:00:00

  • Identification of the entire chromosome complement of bread wheat by two-colour FISH.

    abstract::Using the Aegilops tauschii clone pAs1 together with the barley clone pHvG38 for two-colour fluorescence in situ hybridization (FISH) the entire chromosome complement of hexaploid wheat was identified. The combination of the two probes allowed easy discrimination of the three genomes of wheat. The banding pattern obta...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g97-077

    authors: Pedersen C,Langridge P

    更新日期:1997-10-01 00:00:00

  • Isochromosome Y in an infertile heifer.

    abstract::The chromosome makeup of a 3-year-old crossbred heifer was examined in an attempt to explore the cytogenetic causes of her infertility. The heifer proved to be a mosaic carrying predominantly XY cells and with approximately 30% of cells lacking a normal Y. The minor population included cells carrying a dicentric isoch...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g90-104

    authors: Pinheiro LE,Mikich AB,Bechara GH,Almeida IL,Basrur PK

    更新日期:1990-10-01 00:00:00

  • QTL mapping of BNYVV resistance from the WB41 source in sugar beet.

    abstract::The most important rhizomania-resistance gene in sugar beet is the Rz1 gene from the Holly Sugar Company in California, the source widely used to breed partially resistant varieties. Other important gene sources are WB41 and WB42, which both originate from Beta vulgaris subsp. maritima collected in Denmark, and which ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g04-108

    authors: Gidner S,Lennefors BL,Nilsson NO,Bensefelt J,Johansson E,Gyllenspetz U,Kraft T

    更新日期:2005-04-01 00:00:00

  • Development of a selection index to improve market value of cultured Atlantic salmon (Salmo salar).

    abstract::Genetic parameters were estimated on growth and development traits using analyses of variance and covariance of 42 full-sib families from a select line, 39 full-sib families from a control line of the same strain, and 37 full-sib families from another unselected strain. The traits included percent 1+ smolts, percent s...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g92-046

    authors: O'Flynn FM,Friars GW,Bailey JK,Terhune JM

    更新日期:1992-04-01 00:00:00

  • Ty1-copia-like retrotransposons of tomato (Lycopersicon esculentum Mill.).

    abstract::We have used a PCR and cloning strategy to identify Ty1-copia-like retrotransposons in tomato, Lycopersicon esculentum Mill. Using degenerate oligonucleotide primers corresponding to conserved domains of the Ty1-copia retrotransposon reverse transcriptase (RT), fragments of about 260 bp were obtained by PCR amplificat...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g00-056

    authors: Rogers SA,Pauls KP

    更新日期:2000-10-01 00:00:00

  • Rapid detection of 1B, 1BL/1RS heterozygotes in the development of homozygous 1BL/1RS translocation stocks of Triticum turgidum (2n = 4x = 28).

    abstract::A biochemical marker was utilized to facilitate detection of chromosome 1B, 1BL/1RS translocation heterozygote plants in segregating backcross progenies during the development of 1BL/1RS homozygous lines in several Triticum turgidum L. cultivars (2n = 4x = 28; AABB). Isoelectric focussing of glucose phosphate isomeras...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g93-144

    authors: William MD,Mujeeb-Kazi A

    更新日期:1993-12-01 00:00:00

  • Mapping the SRY gene in Microtus cabrerae: a vole species with multiple SRY copies in males and females.

    abstract::The SRY gene is a single-copy, male-specific gene, located on the Y chromosome in most mammals. However, recently we have described the presence of multiple polymorphic copies of this gene in both males and females of the vole species Microtus cabrerae. Here, we present the chromosomal localization of SRY gene copies ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g02-007

    authors: Fernández R,Barragán MJ,Bullejos M,Marchal JA,Martínez S,Díaz de la Guardia R,Sánchez A

    更新日期:2002-06-01 00:00:00

  • Conversion of AFLP markers associated with FHB resistance in wheat into STS markers with an extension-AFLP method.

    abstract::Amplified fragment length polymorphism (AFLP) has proven a powerful tool for tagging genes or quantitative trait loci (QTLs) of interest in plants. However, conversion of AFLP markers into sequence-tagged site (STS) markers is technically challenging in wheat owing to the complicated nature of its genome. In this stud...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g04-022

    authors: Xu DH,Ban T

    更新日期:2004-08-01 00:00:00

  • Gene segregation in induced tetraploid rainbow trout: genetic evidence of preferential pairing of homologous chromosomes.

    abstract::Gene segregation at six protein loci was analysed in progeny from tetraploid males and females obtained by suppression of first mitosis. The triploid full-sib families from five tetraploid males and the diploid gynogenetic lines from four tetraploid females were examined. The proportions of heterozygous gametes (0.83 ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g88-092

    authors: Diter A,Guyomard R,Chourrout D

    更新日期:1988-08-01 00:00:00

  • Genetic diversity of different apricot geographical groups determined by SSR markers.

    abstract::Forty apricot cultivars with different geographic origins belonging to the germplasm collections of St. Istvan University (Budapest, Hungary) and the Instituto Valenciano de Investigaciones Agrarias (IVIA) (Valencia, Spain) were studied by means of SSR markers. The aim of the study was to determine the genetic relatio...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g02-128

    authors: Romero C,Pedryc A,Muñoz V,Llácer G,Badenes ML

    更新日期:2003-04-01 00:00:00

  • Clonal variation in the parthenogenetic rock lizard Lacerta armeniaca.

    abstract::Genetic diversity at 35 allozyme loci was surveyed in seven populations of Lacerta armeniaca. Fixed heterozygotes were present at 16 loci, with homozygotes at 17 loci. Variation occurred at two loci, one in each of two populations, indicating one widespread clone, one restricted clone, and one apparently restricted cl...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g95-141

    authors: Macculloch RD,Murphy RW,Kupriyanova LA,Darevsky IS,Danielyan FD

    更新日期:1995-12-01 00:00:00

  • Genetic mapping of resistance factors to Phytophthora palmivora in cocoa.

    abstract::Phytophthora palmivora causes pod rot, a serious disease on cocoa widespread throughout the producing regions. In order to ascertain the genetic determination of cocoa resistance to P. palmivora, a study was carried out on two progenies derived from crosses between a heterozygous, moderately resistant Forastero clone,...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-44-1-79

    authors: Flament MH,Kebe I,Clément D,Pieretti I,Risterucci AM,N'Goran JA,Cilas C,Despréaux D,Lanaud C

    更新日期:2001-02-01 00:00:00

  • Full-length transcriptome analysis and identification of genes involved in asarinin and aristolochic acid biosynthesis in medicinal plant Asarum sieboldii.

    abstract::Asarum sieboldii a well-known traditional Chinese medicinal herb, is used for curing inflammation and ache. It contains both bioactive ingredient asarinin and the toxic compound aristolochic acid. To address further breeding demand, genes involved in the biosynthetic pathways of asarinin and aristolochic acid should b...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2020-0095

    authors: Chen C,Shi X,Zhou T,Li W,Li S,Bai G

    更新日期:2020-12-15 00:00:00

  • DNA distribution pattern and metabolite profile of wild edible lobster mushroom (Hypomyces lactifluorum/Russula brevipes).

    abstract::Lobster mushroom is a wild edible mushroom with potential commercial value. It is the product resulting of the infection, most commonly of Russula brevipes, by Hypomyces lactifluorum. This study undertook quantitative polymerase chain reaction analysis of tissues sampled at different infection stages to investigate R....

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2017-0168

    authors: Laperriere G,Desgagné-Penix I,Germain H

    更新日期:2018-05-01 00:00:00

  • Detection of cytosine methylation and mapping of a gene influencing cytosine methylation in the genome of Citrus.

    abstract::A new method was developed to detect DNA methylation in the Citrus genome using random amplification coupled with restriction enzyme digestion. Genomic DNA from Citrus grandis (L.) Osb., Poncirus trifoliata (L.) Raf., and their F1 hybrid was amplified using 7 individual 10-mer random primers. Prior to amplification th...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g96-032

    authors: Cai Q,Guy CL,Moore GA

    更新日期:1996-04-01 00:00:00

  • Antisense inhibition of a tomato meiotic proteinase suggests functional redundancy of proteinases during microsporogenesis.

    abstract::Anther development in angiosperms culminates in the programmed cell death of specific tissues to facilitate the release of pollen. Despite a wealth of morphological descriptions of this process, there have been few reports on the regulation of dehiscence or the coordination of events between tissues. We have cloned an...

    journal_title:Genome

    pub_type: 杂志文章

    doi:

    authors: Riggs CD,Zeman K,Deguzman R,Rzepczyk A,Taylor AA

    更新日期:2001-08-01 00:00:00

  • Relationship between pachytene synapsis, metaphase I associations, and transmission of 2B and 4B chromosomes in rye.

    abstract::2B rye plants selected for high (H) or low (L) B transmission rate were studied at pachytene and metaphase I of meiosis to determine the relationship between synapsis, bivalents at metaphase I, and B transmission rate. The results show that the 2 B chromosomes (Bs) form bivalents at pachytene in both the H and L lines...

    journal_title:Genome

    pub_type: 杂志文章

    doi:

    authors: Jiménez G,Manzanero S,Puertas MJ

    更新日期:2000-04-01 00:00:00

  • Analysis of genetic diversity in red clover (Trifolium pratense L.) breeding populations as revealed by RAPD genetic markers.

    abstract::Red clover is an important forage legume species for temperate regions and very little is known about the genetic organization of its breeding populations. We used random amplified polymorphic DNA (RAPD) genetic markers to address the genetic diversity and the distribution of variation in 20 breeding populations and c...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g03-030

    authors: Ulloa O,Ortega F,Campos H

    更新日期:2003-08-01 00:00:00

  • EST sequencing and gene expression profiling of cultivated peanut (Arachis hypogaea L.).

    abstract::Peanut (Arachis hypogaea L.) is one of the most important oil crops in the world. However, biotechnological based improvement of peanut is far behind many other crops. It is critical and urgent to establish the biotechnological platform for peanut germplasm innovation. In this study, a peanut seed cDNA library was con...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g10-074

    authors: Bi YP,Liu W,Xia H,Su L,Zhao CZ,Wan SB,Wang XJ

    更新日期:2010-10-01 00:00:00