Critical analysis of protein signaling networks involved in the regulation of plant secondary metabolism: focus on anthocyanins.

Abstract:

:Anthocyanin biosynthesis in Arabidopsis is a convenient and relatively simple model for investigating the basic principles of secondary metabolism regulation. In recent years, many publications have described links between anthocyanin biosynthesis and general defense reactions in plants as well as photomorphogenesis and hormonal signaling. These relationships are complex, and they cannot be understood intuitively. Upon observing the lacuna in the Arabidopsis interactome (an interaction map of the factors involved in the regulation of Arabidopsis secondary metabolism is not available), we attempted to connect various cellular processes that affect anthocyanin biosynthesis. In this review, we revealed the main signaling protein modules that regulate anthocyanin biosynthesis. To our knowledge, this is the first reconstruction of a network of proteins involved in plant secondary metabolism.

journal_name

Crit Rev Biotechnol

authors

Bulgakov VP,Avramenko TV,Tsitsiashvili GS

doi

10.3109/07388551.2016.1141391

subject

Has Abstract

pub_date

2017-09-01 00:00:00

pages

685-700

issue

6

eissn

0738-8551

issn

1549-7801

journal_volume

37

pub_type

杂志文章,评审
  • Experimental design methods for bioengineering applications.

    abstract::Experimental design is a form of process analysis in which certain factors are selected to obtain the desired responses of interest. It may also be used for the determination of the effects of various independent factors on a dependent factor. The bioengineering discipline includes many different areas of scientific i...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.3109/07388551.2014.973014

    authors: Keskin Gündoğdu T,Deniz İ,Çalışkan G,Şahin ES,Azbar N

    更新日期:2016-01-01 00:00:00

  • Multifaceted roles of aquaporins as molecular conduits in plant responses to abiotic stresses.

    abstract::Abiotic stress has become a challenge to food security due to occurrences of climate change and environmental degradation. Plants initiate molecular, cellular and physiological changes to respond and adapt to various types of abiotic stress. Understanding of plant response mechanisms will aid in strategies aimed at im...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.3109/07388551.2014.973367

    authors: Srivastava AK,Penna S,Nguyen DV,Tran LS

    更新日期:2016-01-01 00:00:00

  • The filamentous fungal pellet and forces driving its formation.

    abstract::Filamentous fungi play an important role not only in the bio-manufacturing of value-added products, but also in bioenergy and environmental research. The bioprocess manipulation of filamentous fungi is more difficult than that of other microbial species because of their different pellet morphologies and the presence o...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.3109/07388551.2015.1084262

    authors: Zhang J,Zhang J

    更新日期:2016-12-01 00:00:00

  • Endophyte-assisted phytoremediation: mechanisms and current application strategies for soil mixed pollutants.

    abstract::Phytoremediation uses plants and associated microbes to remove pollutants from the environment and is considered a promising bioremediation method. Compared with well-described single contaminant treatments, the number of studies reporting phytoremediation of soil mixed pollutants has increased recently. Endophytes, i...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1080/07388551.2019.1675582

    authors: He W,Megharaj M,Wu CY,Subashchandrabose SR,Dai CC

    更新日期:2020-02-01 00:00:00

  • Chymosin and other milk coagulants: sources and biotechnological interventions.

    abstract::Calf rennet, which consists of over 90% chymosin, is commonly used in cheese industries for the curdling of milk. Various animal, plant and microbial sources have been exploited as possible alternatives to calf rennet. The coagulating properties of the enzymatic preparations (coagulants) from these sources differ in t...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.3109/07388551.2010.483459

    authors: Kumar A,Grover S,Sharma J,Batish VK

    更新日期:2010-12-01 00:00:00

  • Endophytes, biotransforming microorganisms, and engineering microbial factories for triterpenoid saponins production.

    abstract::Triterpenoid saponins are structurally diverse secondary metabolites. They are the main active ingredient of many medicinal plants and have a wide range of pharmacological effects. Traditional production of triterpenoid saponins, directly extracted from cultivated plants, cannot meet the rapidly growing demand of phar...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章

    doi:10.1080/07388551.2020.1869691

    authors: Yao L,Wang J,He J,Huang L,Gao W

    更新日期:2021-01-20 00:00:00

  • Solid-state fermentation systems-an overview.

    abstract::Starting with a brief history of solid-state fermentation (SSF), major aspects of SSF are reviewed, which include factors affecting SSF, biomass, fermentors, modeling, industrial microbial enzymes, organic acids, secondary metabolites, and bioremediation. Physico-chemical and environmental factors such as inoculum typ...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1080/07388550590925383

    authors: Krishna C

    更新日期:2005-01-01 00:00:00

  • A methodological combined framework for roadmapping biosensor research: a fault tree analysis approach within a strategic technology evaluation frame.

    abstract::Biosensor technology began in the 1960s to revolutionize instrumentation and measurement. Despite the glucose sensor market success that revolutionized medical diagnostics, and artificial pancreas promise currently the approval stage, the industry is reluctant to capitalize on other relevant university-produced knowle...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.3109/07388551.2013.790339

    authors: Siontorou CG,Batzias FA

    更新日期:2014-03-01 00:00:00

  • Advances in directed molecular evolution of reporter genes.

    abstract::Many reporter genes, such as gfp, gusA, and lacZ, are widely used for research into plants, animals, and microorganisms. Reporter genes, which offer high levels of sensitivity and convenience of detection, have been utilized in transgenic technology, promoter analysis, drug screening, and other areas. Directed molecul...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.3109/07388551.2011.593503

    authors: Xiong AS,Peng RH,Zhuang J,Davies J,Zhang J,Yao QH

    更新日期:2012-06-01 00:00:00

  • Hydrodynamic cavitation as a strategy to enhance the efficiency of lignocellulosic biomass pretreatment.

    abstract::Hydrodynamic cavitation (HC) is a process technology with potential for application in different areas including environmental, food processing, and biofuels production. Although HC is an undesirable phenomenon for hydraulic equipment, the net energy released during this process is enough to accelerate certain chemica...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章

    doi:10.1080/07388551.2017.1369932

    authors: Terán Hilares R,Ramos L,da Silva SS,Dragone G,Mussatto SI,Santos JCD

    更新日期:2018-06-01 00:00:00

  • Recent trends in ionic liquid (IL) tolerant enzymes and microorganisms for biomass conversion.

    abstract::Second generation biofuel production depends on lignocellulosic (LC) biomass transformation into simple sugars and their subsequent fermentation into alcohols. However, the main obstacle in this process is the efficient breakdown of the recalcitrant cellulose to sugar monomers. Hence, efficient feedstock pretreatment ...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.3109/07388551.2013.843069

    authors: Portillo Mdel C,Saadeddin A

    更新日期:2015-01-01 00:00:00

  • A review on the nucleic acid constituents in mushrooms: nucleobases, nucleosides and nucleotides.

    abstract::Mushrooms have become increasingly important as a reliable food source. They have also been recognized as an important source of bioactive compounds of high nutritional and medicinal values. The nucleobases, nucleosides and nucleotides found in mushrooms play important roles in the regulation of various physiological ...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1080/07388551.2017.1399102

    authors: Phan CW,Wang JK,Cheah SC,Naidu M,David P,Sabaratnam V

    更新日期:2018-08-01 00:00:00

  • Methods for investigating biosurfactants and bioemulsifiers: a review.

    abstract::Microorganisms produce biosurfactant (BS)/bioemulsifier (BE) with wide structural and functional diversity which consequently results in the adoption of different techniques to investigate these diverse amphiphilic molecules. This review aims to compile information on different microbial screening methods, surface act...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.3109/07388550903427280

    authors: Satpute SK,Banpurkar AG,Dhakephalkar PK,Banat IM,Chopade BA

    更新日期:2010-06-01 00:00:00

  • Use of algae for removing heavy metal ions from wastewater: progress and prospects.

    abstract::Many algae have immense capability to sorb metals, and there is considerable potential for using them to treat wastewaters. Metal sorption involves binding on the cell surface and to intracellular ligands. The adsorbed metal is several times greater than intracellular metal. Carboxyl group is most important for metal ...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1080/07388550500248571

    authors: Mehta SK,Gaur JP

    更新日期:2005-07-01 00:00:00

  • Impact of host cell line choice on glycan profile.

    abstract::Protein glycosylation is post-translational modification (PTM) which is important for pharmacokinetics and immunogenicity of recombinant glycoprotein therapeutics. As a result of variations in monosaccharide composition, glycosidic linkages and glycan branching, glycosylation introduces considerable complexity and het...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1080/07388551.2017.1416577

    authors: Goh JB,Ng SK

    更新日期:2018-09-01 00:00:00

  • The commercialization of genome-editing technologies.

    abstract::The emergence of new gene-editing technologies is profoundly transforming human therapeutics, agriculture, and industrial biotechnology. Advances in clustered regularly interspaced short palindromic repeats (CRISPR) have created a fertile environment for mass-scale manufacturing of cost-effective products ranging from...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章

    doi:10.1080/07388551.2016.1271768

    authors: Brinegar K,K Yetisen A,Choi S,Vallillo E,Ruiz-Esparza GU,Prabhakar AM,Khademhosseini A,Yun SH

    更新日期:2017-11-01 00:00:00

  • Recent advances in small RNA mediated plant-virus interactions.

    abstract::Small RNAs (sRNA) are reported to play pivotal roles in the epigenetic and post-transcriptional regulation of gene expression during growth, development, and stress response in plants. Recently, the involvement of two different classes of sRNAs namely, miRNAs (microRNAs), and siRNAs (small interfering RNAs) in biotic ...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1080/07388551.2019.1597830

    authors: Prasad A,Sharma N,Muthamilarasan M,Rana S,Prasad M

    更新日期:2019-06-01 00:00:00

  • Alginate as an immobilization material for MAb production via encapsulated hybridoma cells.

    abstract::Alginate has been widely used in various applications since its first extraction. What makes this biopolymer useful is its high biocompatibility and humid gelation conditions. Both of these features bring it into prominence as an ideal immobilization material. However, there are some complicated aspects of cell immobi...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.3109/07388550903451652

    authors: Selimoglu SM,Elibol M

    更新日期:2010-06-01 00:00:00

  • Plant-pathogen interactions: toward development of next-generation disease-resistant plants.

    abstract::Briskly evolving phytopathogens are dire threats to our food supplies and threaten global food security. From the recent advances made toward high-throughput sequencing technologies, understanding of pathogenesis and effector biology, and plant innate immunity, translation of these means into new control tools is bein...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.3109/07388551.2015.1134437

    authors: Nejat N,Rookes J,Mantri NL,Cahill DM

    更新日期:2017-03-01 00:00:00

  • Microbial diversity in support of anaerobic biomass valorization.

    abstract::Microbial diversity provides an immense reservoir of functions and supports key steps in maintaining ecosystem balance through matter decomposition processes and nutrient recycling. The use of microorganisms for biomolecule production is now common, but often involves single-strain cultures. In this review, we highlig...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.3109/07388551.2015.1100584

    authors: Jobard M,Pessiot J,Nouaille R,Fonty G,Sime-Ngando T

    更新日期:2017-02-01 00:00:00

  • Recent advances in biological production of erythritol.

    abstract::Erythritol is a natural sweetener commonly used in the food and pharmaceutical industries. Produced by microorganisms as an osmoprotectant, it is an ideal sucrose substitute for diabetics or overweight persons due to its almost zero calorie content. Currently, erythritol is produced on an industrial scale through the ...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1080/07388551.2017.1380598

    authors: Rzechonek DA,Dobrowolski A,Rymowicz W,Mirończuk AM

    更新日期:2018-06-01 00:00:00

  • Molecular insights into the regulation of rice kernel elongation.

    abstract::A large number of rice agronomic traits are complex, multi factorial and polygenic. As the mechanisms and genes determining grain size and yield are largely unknown, the identification of regulatory genes related to grain development remains a preeminent approach in rice genetic studies and breeding programs. Genes re...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1080/07388551.2019.1632257

    authors: Azizi P,Osman M,Hanafi MM,Sahebi M,Rafii MY,Taheri S,Harikrishna JA,Tarinejad AR,Mat Sharani S,Yusuf MN

    更新日期:2019-11-01 00:00:00

  • Strategies for recycling and valorization of grape marc.

    abstract::Grapes are one of the most cultivated fruit crops worldwide. Either for wine or juice production, grape processing generates a large amount of residues that must be treated, disposed of or reused properly to reduce their pollution load before being applied to the soil. In this review, a special focus is given to the t...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章

    doi:10.1080/07388551.2018.1555514

    authors: Gómez-Brandón M,Lores M,Insam H,Domínguez J

    更新日期:2019-06-01 00:00:00

  • White rot fungi and advanced combined biotechnology with nanomaterials: promising tools for endocrine-disrupting compounds biotransformation.

    abstract::Endocrine-disrupting compounds (EDCs) can interfere with endocrine systems and bio-accumulate through the food chain and even decrease biodiversity in contaminated areas. This review discusses a critical overview of recent research progress in the biotransformation of EDCs (including polychlorinated biphenyl and nonyl...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1080/07388551.2017.1386613

    authors: Huang D,Guo X,Peng Z,Zeng G,Xu P,Gong X,Deng R,Xue W,Wang R,Yi H,Liu C

    更新日期:2018-08-01 00:00:00

  • Alternative carbohydrate pathways - enzymes, functions and engineering.

    abstract::Metabolic engineering is crucial in the development of production strains for platform chemicals, pharmaceuticals and biomaterials from renewable resources. The central carbon metabolism (CCM) of heterotrophs plays an essential role in the conversion of biomass to the cellular building blocks required for growth. Yet,...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章

    doi:10.1080/07388551.2020.1785386

    authors: Kopp D,Sunna A

    更新日期:2020-11-01 00:00:00

  • An overview of Bacillus proteases: from production to application.

    abstract::Proteases have a broad range of applications in industrial processes and products and are representative of most worldwide enzyme sales. The genus Bacillus is probably the most important bacterial source of proteases and is capable of producing high yields of neutral and alkaline proteolytic enzymes with remarkable pr...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1080/07388551.2017.1354354

    authors: Contesini FJ,Melo RR,Sato HH

    更新日期:2018-05-01 00:00:00

  • Hydrogel-based methods for engineering cellular microenvironment with spatiotemporal gradients.

    abstract::Natural cellular microenvironment consists of spatiotemporal gradients of multiple physical (e.g. extracellular matrix stiffness, porosity and stress/strain) and chemical cues (e.g. morphogens), which play important roles in regulating cell behaviors including spreading, proliferation, migration, differentiation and a...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.3109/07388551.2014.993588

    authors: Wang L,Li Y,Huang G,Zhang X,Pingguan-Murphy B,Gao B,Lu TJ,Xu F

    更新日期:2016-01-01 00:00:00

  • Transport and transcriptional regulation of oil production in plants.

    abstract::Triacylglycerol (TAG) serves as an energy reservoir and phospholipids as build blocks of biomembrane to support plant life. They also provide human with foods and nutrients. Multi-compartmentalized biosynthesis, trafficking or cross-membrane transport of lipid intermediates or precursors and their regulatory mechanism...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1080/07388551.2016.1212185

    authors: Manan S,Chen B,She G,Wan X,Zhao J

    更新日期:2017-08-01 00:00:00

  • Recent advances in mechanical characterisation of biofilm and their significance for material modelling.

    abstract::In recent years, the advances in microbiology show that biofilms are structurally complex, dynamic and adaptable systems including attributes of multicellular organisms and miscellaneous ecosystems. One may distinguish between beneficial and harmful biofilms appearing in daily life as well as various industrial proces...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.3109/07388551.2012.679250

    authors: Böl M,Ehret AE,Bolea Albero A,Hellriegel J,Krull R

    更新日期:2013-06-01 00:00:00

  • Fcγ1 fragment of IgG1 as a powerful affinity tag in recombinant Fc-fusion proteins: immunological, biochemical and therapeutic properties.

    abstract::Affinity tags are vital tools for the production of high-throughput recombinant proteins. Several affinity tags, such as the hexahistidine tag, maltose-binding protein, streptavidin-binding peptide tag, calmodulin-binding peptide, c-Myc tag, glutathione S-transferase and FLAG tag, have been introduced for recombinant ...

    journal_title:Critical reviews in biotechnology

    pub_type: 杂志文章,评审

    doi:10.3109/07388551.2016.1163323

    authors: Soleimanpour S,Hassannia T,Motiee M,Amini AA,Rezaee SA

    更新日期:2017-05-01 00:00:00