Bacterial persistence from a system-level perspective.

Abstract:

:In recent years, our understanding about bacterial persistence has significantly advanced: we comprehend the persister phenotype better, more triggers for persistence entry have been found, and more insights in the involvement and role of toxin-antitoxin systems and other molecular mechanisms have been unravelled. In this review, we attempt to put these findings into an integrated, system-level perspective. From this point of view, persistence can be seen as a response to a strong perturbation of metabolic homeostasis, either triggered environmentally, or by means of intracellular stochasticity. Metabolic-flux-regulated resource allocation ensures stress protection, and several feedback mechanisms stabilize the cells in this protected state. We hope that this novel view can advance our understanding about persistence.

journal_name

Curr Opin Biotechnol

authors

Radzikowski JL,Schramke H,Heinemann M

doi

10.1016/j.copbio.2017.02.012

subject

Has Abstract

pub_date

2017-08-01 00:00:00

pages

98-105

eissn

0958-1669

issn

1879-0429

pii

S0958-1669(16)30211-7

journal_volume

46

pub_type

杂志文章,评审
  • Combined metal catalysis and biocatalysis for an efficient deracemization process.

    abstract::Driven by the demand to enhance the economic balance of chemical processes, the transformation of a racemate into a single stereoisomer (the deracemization process) is one of the most important areas of research. The recent development of the combined use of enzyme and metal catalysis has led to efficient deracemizati...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(03)00097-1

    authors: Pàmies O,Bäckvall JE

    更新日期:2003-08-01 00:00:00

  • Environmental monitoring using autonomous vehicles: a survey of recent searching techniques.

    abstract::Autonomous vehicles are becoming an essential tool in a wide range of environmental applications that include ambient data acquisition, remote sensing, and mapping of the spatial extent of pollutant spills. Among these applications, pollution source localization has drawn increasing interest due to its scientific and ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.01.009

    authors: Bayat B,Crasta N,Crespi A,Pascoal AM,Ijspeert A

    更新日期:2017-06-01 00:00:00

  • Biomaterials meet microfluidics: building the next generation of artificial niches.

    abstract::Biomaterials are increasingly being developed as in vitro microenvironments mimicking in vivo stem cell niches. However, current macroscale methodologies to produce these niche models fail to recapitulate the spatial and temporal characteristics of the complex native stem cell regulatory systems. Microfluidic technolo...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2011.07.001

    authors: Kobel S,Lutolf MP

    更新日期:2011-10-01 00:00:00

  • Bioactive fungal polysaccharides as potential functional ingredients in food and nutraceuticals.

    abstract::Fungal bioactive polysaccharides deriving mainly from the Basidiomycetes family (and some from the Ascomycetes) and medicinal mushrooms have been well known and widely used in far Asia as part of traditional diet and medicine, and in the last decades have been the core of intense research for the understanding and the...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2014.01.010

    authors: Giavasis I

    更新日期:2014-04-01 00:00:00

  • Carbohydrate diversity: synthesis of glycoconjugates and complex carbohydrates.

    abstract::The fundamental role of glycoconjugates in many biological processes is now well appreciated and has intensified the development of innovative and improved synthetic strategies. All areas of synthetic methodology have seen major advances and many complex, highly branched carbohydrates and glycoproteins have been prepa...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2004.10.001

    authors: Hölemann A,Seeberger PH

    更新日期:2004-12-01 00:00:00

  • Biotechnological potential of aquatic plant-microbe interactions.

    abstract::The rhizosphere in terrestrial systems is the region of soil surrounding plant roots where there is increased microbial activity; in aquatic plants, this definition may be less clear because of diffusion of nutrients in water, but there is still a zone of influence by plant roots in this environment [1]. Within that z...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2010.04.004

    authors: Stout L,Nüsslein K

    更新日期:2010-06-01 00:00:00

  • Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays.

    abstract::The ecophysiology of microorganisms has been at the heart of microbial ecology since its early days, but only during the past decade have methods become available for cultivation-independent, direct identification of microorganisms in complex communities and for the simultaneous investigation of their activity and sub...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2005.12.006

    authors: Wagner M,Nielsen PH,Loy A,Nielsen JL,Daims H

    更新日期:2006-02-01 00:00:00

  • Sample treatment procedures for environmental sensing and biosensing.

    abstract::During the last years, a lot of efforts have been put into developing novel sensors and biosensors systems for monitoring the occurrence of emerging pollutants in the environment. These analyses are often challenging because of the variety of physico-chemical properties of these substances, the extremely diluted conce...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.02.017

    authors: Sanchís J,Llorca M,Barceló D,Farré M

    更新日期:2017-06-01 00:00:00

  • Recent trends in nanopores for biotechnology.

    abstract::Nanopore technology employs a nanoscale hole in an insulating membrane to stochastically sense with high throughput individual biomolecules in solution. The generality of the nanopore detection principle and the ease of single-molecule detection suggest many potential applications of nanopores in biotechnology. Recent...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2012.11.008

    authors: Stoloff DH,Wanunu M

    更新日期:2013-08-01 00:00:00

  • Drinking water microbiology--from measurement to management.

    abstract::New microbial tools enable detailed quantification and characterization of complex drinking water (DW) microbiomes. Many opportunities exist from source to tap to apply this knowledge toward management of the microbiology. This requires consideration of the microbiome continuum across all phases harboring microbes (pl...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2014.12.014

    authors: Proctor CR,Hammes F

    更新日期:2015-06-01 00:00:00

  • Designer microbes for biosynthesis.

    abstract::Microbes have long been adapted for the biosynthetic production of useful compounds. There is increasing demand for the rapid and cheap microbial production of diverse molecules in an industrial setting. Microbes can now be designed and engineered for a particular biosynthetic purpose, thanks to recent developments in...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2014.02.014

    authors: Quin MB,Schmidt-Dannert C

    更新日期:2014-10-01 00:00:00

  • Engineering approaches to study fibrosis in 3-D in vitro systems.

    abstract::Fibrotic diseases occur in virtually every tissue of the body and are a major cause of mortality, yet they remain largely untreatable and poorly understood on a mechanistic level. The development of anti-fibrotic agents has been hampered, in part, by the insufficient fibrosis biomimicry provided by traditional in vitr...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2016.02.006

    authors: Porras AM,Hutson HN,Berger AJ,Masters KS

    更新日期:2016-08-01 00:00:00

  • Techniques for the experimental investigation of the protein corona.

    abstract::Due to its enormous relevance the corona formation of adsorbed proteins around nanoparticles is widely investigated. A comparison of different experimental techniques is given. Direct measurements of proteins, such as typically performed with mass spectrometry, will be compared with indirect analysis, in which instead...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.02.009

    authors: Carrillo-Carrion C,Carril M,Parak WJ

    更新日期:2017-08-01 00:00:00

  • Biosynthesis of fatty acid-derived hydrocarbons: perspectives on enzymology and enzyme engineering.

    abstract::Enormous fuel consumption and growing environmental concerns have been spurring development of renewable biofuels. Among various biofuels, fatty acid-derived biohydrocarbons are ideal alternatives to non-renewable fossil fuels due to their closest properties to petroleum-based fuels. In the past decade, novel hydrocar...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2019.07.005

    authors: Liu K,Li S

    更新日期:2020-04-01 00:00:00

  • Fungal metabolite analysis in genomics and phenomics.

    abstract::Metabolomics consists of strategies to quantitatively identify cellular metabolites and to understand how trafficking of these biochemical messengers through the metabolic network influences phenotype. The application of metabolomics to fungi has been strongly pursued because these organisms are widely used for the pr...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2006.02.001

    authors: Jewett MC,Hofmann G,Nielsen J

    更新日期:2006-04-01 00:00:00

  • Ligand-binding domain of estrogen receptors.

    abstract::Estrogen receptors are multi-domain proteins that interact with other proteins and DNA to fulfil their function: the regulation of transcription. During the past 2-3 years, our understanding of this complex process has increased tremendously as crystal structures of isolated ligand-binding domains in complex with vari...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(99)00034-8

    authors: Mueller-Fahrnow A,Egner U

    更新日期:1999-12-01 00:00:00

  • Advances in synthetic biology: on the path from prototypes to applications.

    abstract::Synthetic biology combines knowledge from various disciplines including molecular biology, engineering, mathematics and physics to design and build novel proteins, genetic circuits and metabolic networks. Early efforts aimed at altering the behavior of individual elements have now evolved to focus on the construction ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2005.07.002

    authors: McDaniel R,Weiss R

    更新日期:2005-08-01 00:00:00

  • Novel biotechnological approaches to produce biological compounds: challenges and opportunities for science communication.

    abstract::Novel biotechnological approaches such as Metabolic Engineering (ME) and New Plant Breeding Techniques (NPBTs) are currently being developed to produce biological compounds for food and non-food products. NPBTs span a range of methods for in vivo production in crops, some of which are classified as GMOs while others a...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2018.08.012

    authors: Pei L,Schmidt M

    更新日期:2019-04-01 00:00:00

  • Systems biology approach to bioremediation.

    abstract::Bioremediation has historically been approached as a 'black box' in terms of our fundamental understanding. Thus it succeeds and fails, seldom without a complete understanding of why. Systems biology is an integrated research approach to study complex biological systems, by investigating interactions and networks at t...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2012.01.015

    authors: Chakraborty R,Wu CH,Hazen TC

    更新日期:2012-06-01 00:00:00

  • Stabilization of protein structures.

    abstract::The technique of protein stabilization has been improving steadily in recent years, but it is only in the past year or two that the stability of some protein molecules has been improved to the level of those from extreme thermophilic organisms. This was achieved by multiple mutations and often by utilizing the knowled...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(97)80063-8

    authors: Lee B,Vasmatzis G

    更新日期:1997-08-01 00:00:00

  • Particle bombardment: a universal approach for gene transfer to cells and tissues.

    abstract::In the past year, significant progress in the field of gene transfer has been made possible by refinement of the technique of particle bombardment. The process has been utilized for the study of gene expression in plastids and mitochondria, the production of transgenic crop plants and gene transfer into live animals. ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/0958-1669(93)90081-7

    authors: Klein TM,Fitzpatrick-McElligott S

    更新日期:1993-10-01 00:00:00

  • Metabolic flux analysis in eukaryotes.

    abstract::Metabolic flux analysis (MFA) represents a powerful tool for systems biology research on eukaryotic cells. This review describes recent advances, the challenges as well as applications of metabolic flux analysis comprising fungi, mammalian cells and plants. While MFA is widely established and applied in microorganisms...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2010.01.011

    authors: Niklas J,Schneider K,Heinzle E

    更新日期:2010-02-01 00:00:00

  • Fermentation technologies for the production of probiotics with high viability and functionality.

    abstract::There is growing scientific evidence supported by mechanistic and clinical studies that probiotics can provide health benefits. As probiotics are highly sensitive to many environmental factors, and because the propagation of many strains of intestinal origin is not straightforward, most commercial strains are selected...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2007.02.002

    authors: Lacroix C,Yildirim S

    更新日期:2007-04-01 00:00:00

  • Towards synthetic microbial consortia for bioprocessing.

    abstract::The use of microbial consortia for bioprocessing has been limited by our ability to reliably control community composition and function simultaneously. Recent advances in synthetic biology have enabled population-level coordination and control of ecosystem stability and dynamics. Further, new experimental and computat...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2012.02.001

    authors: Shong J,Jimenez Diaz MR,Collins CH

    更新日期:2012-10-01 00:00:00

  • Antibody discovery: phage display.

    abstract::Phage display has proven to be a robust and convenient technology for the selection of high-quality human antibodies from diverse libraries. Besides enabling the identification of antibodies in a fast, high-throughput mode, which allows comprehensive protein expression analyses, phage display has been used to identify...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(02)00380-4

    authors: Kretzschmar T,von Rüden T

    更新日期:2002-12-01 00:00:00

  • Synthetic gene networks in mammalian cells.

    abstract::The design and construction of synthetic gene circuits with complex spatiotemporal dynamics was pioneered in bacteria, but it took almost a decade until synthetic biologists were able to construct genetic circuits with complex spatiotemporal dynamics in mammalian cells. This review highlights the most recent advances ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2010.07.006

    authors: Weber W,Fussenegger M

    更新日期:2010-10-01 00:00:00

  • Advances in gentle immunoaffinity chromatography.

    abstract::Immunoaffinity chromatography is one of the most powerful fractionation steps available for protein purification; however, it is often difficult to elute bound protein without using harsh or denaturing elution conditions. The development of methods to identify monoclonal antibodies that bind antigens tightly, but rele...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(02)00340-3

    authors: Burgess RR,Thompson NE

    更新日期:2002-08-01 00:00:00

  • Induction of broadly neutralizing antibodies in Germinal Centre simulations.

    abstract::Vaccines against mutating pathogens such as influenza, HIV, or plasmodium are poorly protective towards new evolving strains. Rare individuals naturally mount broadly neutralizing antibodies covering most strains, but the requirements for their induction are unknown. The antibody response to vaccination has been recap...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2018.01.006

    authors: Robert PA,Marschall AL,Meyer-Hermann M

    更新日期:2018-06-01 00:00:00

  • Brave new proteins: what evolution reveals about protein structure.

    abstract::Synthetic proteins provide important information about the principles of protein structure. They illuminate the processes of natural protein evaluation, but are not limited by these processes. Here, we review studies of several mutant proteins and discuss the general principles that can be derived from them. ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/0958-1669(91)90085-j

    authors: Pastore A,Lesk AM

    更新日期:1991-08-01 00:00:00

  • Advances in monitoring environmental microbes.

    abstract::Culture-independent approaches, such as next-generation sequencing and microarray-based tools, provide insight into the identity and functional diversity of microbial communities. Although these approaches are potentially powerful tools in understanding microbial structure and function, there are a number of limitatio...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2012.10.020

    authors: Hazen TC,Rocha AM,Techtmann SM

    更新日期:2013-06-01 00:00:00