Two cultivated legume plants reveal the enrichment process of the microbiome in the rhizocompartments.

Abstract:

:The microbiomes of rhizocompartments (nodule endophytes, root endophytes, rhizosphere and root zone) in soya bean and alfalfa were analysed using high-throughput sequencing to investigate the interactions among legume species, microorganisms and soil types. A clear hierarchical filtration of microbiota by plants was observed in the four rhizocompartments - the nodule endosphere, root endosphere, rhizosphere and root zone - as demonstrated by significant variations in the composition of the microbial community in the different compartments. The rhizosphere and root zone microbial communities were largely influenced by soil type, and the nodule and root endophytes were primarily determined by plant species. Diverse microbes inhabited the root nodule endosphere, and the corresponding dominant symbiotic rhizobia belonged to Ensifer for alfalfa and Ensifer-Bradyrhizobium for soya bean. The nonsymbiotic nodule endophytes were mainly Proteobacteria, Actinobacteria, Firmicutes and Bacteroidetes. The variation in root microbial communities was also affected by the plant growth stage. In summary, this study demonstrated that the enrichment process of nodule endophytes follows a hierarchical filtration and that the bacterial communities in nodule endophytes vary according to the plant species.

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

Xiao X,Chen W,Zong L,Yang J,Jiao S,Lin Y,Wang E,Wei G

doi

10.1111/mec.14027

subject

Has Abstract

pub_date

2017-03-01 00:00:00

pages

1641-1651

issue

6

eissn

0962-1083

issn

1365-294X

journal_volume

26

pub_type

杂志文章
  • Colonization history and introduction dynamics of capsella bursa-pastoris (Brassicaceae) in north america: isozymes and quantitative traits

    abstract::Multilocus isozyme genotypic composition for aspartate aminotransferase (AAT), leucine aminopeptidase (LAP) and glutamate dehydrogenase (GDH) was studied for Capsella in the source continent, Europe (9000 plants from 593 populations), and in the colonized continent, North America (2700 plants from 88 populations). Nor...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.1999.00752.x

    authors: Neuffer B,Hurka H

    更新日期:1999-10-01 00:00:00

  • All roads lead to weediness: Patterns of genomic divergence reveal extensive recurrent weedy rice origins from South Asian Oryza.

    abstract::Weedy rice (Oryza spp.), a weedy relative of cultivated rice (O. sativa), infests and persists in cultivated rice fields worldwide. Many weedy rice populations have evolved similar adaptive traits, considered part of the 'agricultural weed syndrome', making this an ideal model to study the genetic basis of parallel ev...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14120

    authors: Huang Z,Young ND,Reagon M,Hyma KE,Olsen KM,Jia Y,Caicedo AL

    更新日期:2017-06-01 00:00:00

  • Demographic analyses of marine and terrestrial snakes (Elapidae) using whole genome sequences.

    abstract::The question of whether spatial aspects of evolution differ in marine versus terrestrial realms has endured since Ernst Mayr's 1954 essay on marine speciation. Marine systems are often suggested to support larger and more highly connected populations, but quantitative comparisons with terrestrial systems have been lac...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15726

    authors: Ludington AJ,Sanders KL

    更新日期:2020-11-10 00:00:00

  • A new individual-based spatial approach for identifying genetic discontinuities in natural populations.

    abstract::The population concept is central in evolutionary and conservation biology, but identifying the boundaries of natural populations is often challenging. Here, we present a new approach for assessing spatial genetic structure without the a priori assumptions on the locations of populations made by adopting an individual...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2007.03293.x

    authors: Manel S,Berthoud F,Bellemain E,Gaudeul M,Luikart G,Swenson JE,Waits LP,Taberlet P,Intrabiodiv Consortium.

    更新日期:2007-05-01 00:00:00

  • Plague dynamics and population genetics of the desert locust: can turnover during recession maintain population genetic structure?

    abstract::The desert locust (Schistocerca gregaria) undergoes crowding-induced phase transformation from solitary form to gregarious form. The transformations involves changes in behaviour, colour, development, morphometry, fecundity and endocrine physiology. Recession populations of the desert locust exist primarily in the sol...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2001.01212.x

    authors: Ibrahim KM

    更新日期:2001-03-01 00:00:00

  • Climate rather than geography separates two European honeybee subspecies.

    abstract::Both climatic and geographical factors play an important role for the biogeographical distribution of species. The Carpathian mountain ridge has been suggested as a natural geographical divide between the two honeybee subspecies Apis mellifera carnica and A. m. macedonica. We sampled one worker from one colony each at...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12731

    authors: Coroian CO,Muñoz I,Schlüns EA,Paniti-Teleky OR,Erler S,Furdui EM,Mărghitaş LA,Dezmirean DS,Schlüns H,de la Rúa P,Moritz RF

    更新日期:2014-05-01 00:00:00

  • Postglacial climate changes and rise of three ecotypes of harbour porpoises, Phocoena phocoena, in western Palearctic waters.

    abstract::Despite no obvious barriers to gene flow in the marine realm, environmental variation and ecological specializations can lead to genetic differentiation in highly mobile predators. Here, we investigated the genetic structure of the harbour porpoise over the entire species distribution range in western Palearctic water...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12817

    authors: Fontaine MC,Roland K,Calves I,Austerlitz F,Palstra FP,Tolley KA,Ryan S,Ferreira M,Jauniaux T,Llavona A,Öztürk B,Öztürk AA,Ridoux V,Rogan E,Sequeira M,Siebert U,Vikingsson GA,Borrell A,Michaux JR,Aguilar A

    更新日期:2014-07-01 00:00:00

  • Microsatellite analysis of kinkajou social organization.

    abstract::Kinkajou social groups generally consist of one adult female, two males, one subadult and one juvenile. Based on analysis of variation in 11 microsatellite loci, we assess the degree of kinship within and between four social groups totaling 25 kinkajous. We use exclusion and likelihood analyses to assign parents for s...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2000.00921.x

    authors: Kays RW,Gittleman JL,Wayne RK

    更新日期:2000-06-01 00:00:00

  • Introgression between invasive and native blue mussels (genus Mytilus) in the central California hybrid zone.

    abstract::The ecological and genetic factors determining the extent of introgression between species in secondary contact zones remain poorly understood. Here, we investigate the relative importance of isolating barriers and the demographic expansion of invasive Mytilus galloprovincialis on the magnitude and the direction of in...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13340

    authors: Saarman NP,Pogson GH

    更新日期:2015-09-01 00:00:00

  • Environmental filtering structures fungal endophyte communities in tree bark.

    abstract::The factors that control the assembly and composition of endophyte communities across plant hosts remains poorly understood. This is especially true for endophyte communities inhabiting inner tree bark, one of the least studied components of the plant microbiome. Here, we test the hypothesis that bark of different tre...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15237

    authors: Pellitier PT,Zak DR,Salley SO

    更新日期:2019-12-01 00:00:00

  • Seascape genomics provides evidence for thermal adaptation and current-mediated population structure in American lobster (Homarus americanus).

    abstract::Investigating how environmental features shape the genetic structure of populations is crucial for understanding how they are potentially adapted to their habitats, as well as for sound management. In this study, we assessed the relative importance of spatial distribution, ocean currents and sea surface temperature (S...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13811

    authors: Benestan L,Quinn BK,Maaroufi H,Laporte M,Clark FK,Greenwood SJ,Rochette R,Bernatchez L

    更新日期:2016-10-01 00:00:00

  • Fire increases variance in genetic characteristics of Florida Sand Skink (Plestiodon reynoldsi) local populations.

    abstract::Fire is a complex event that maintains many ecological systems. The Florida Sand Skink (Plestiodon reynoldsi) is precinctive to Florida Scrub, a habitat that is maintained by infrequent fire. We characterize the effect of fire on genetic diversity and genetic differentiation at eight microsatellite loci in the Florida...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04925.x

    authors: Schrey AW,Fox AM,Mushinsky HR,McCoy ED

    更新日期:2011-01-01 00:00:00

  • A broad transition zone between an inner Baltic hybrid swarm and a pure North Sea subspecies of Macoma balthica (Mollusca, Bivalvia).

    abstract::The populations of the bivalve clam Macoma balthica in the low-salinity Northern Baltic Sea represent an admixture of two strongly diverged genomic origins, the Pacific Macoma balthica balthica (approx. 60% genomic contribution) and Atlantic Macoma balthica rubra (40%). Using allozyme and mtDNA characters, we describe...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2007.03688.x

    authors: Nikula R,Strelkov P,Väinölä R

    更新日期:2008-03-01 00:00:00

  • The change in genetic diversity down the core-edge gradient in the eastern spadefoot toad (Pelobates syriacus).

    abstract::Several hypotheses are available to predict change in genetic diversity when approaching peripheral populations. We used the eastern spadefoot toad in Israel as a model system to examine these hypotheses using population genetics analyses and network theory. Our results contradicted most of the predictions from the 'a...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04712.x

    authors: Munwes I,Geffen E,Roll U,Friedmann A,Daya A,Tikochinski Y,Gafny S

    更新日期:2010-07-01 00:00:00

  • Molecular biodiversity and population structure in common ash (Fraxinus excelsior L.) in Britain: implications for conservation.

    abstract::Current forestry policy promotes the use of local seed for new plantings, on the assumption that local material may be better adapted to local conditions. However, landscape-scale genetic studies which are necessary to underpin conservation and breeding strategies are often lacking. We investigated molecular diversity...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2009.04376.x

    authors: Sutherland BG,Belaj A,Nier S,Cottrell JE,P Vaughan S,Hubert J,Russell K

    更新日期:2010-06-01 00:00:00

  • QTL linkage mapping of wing length in zebra finch using genome-wide single nucleotide polymorphisms markers.

    abstract::Avian wing length is an important trait that covaries with the ecology and migratory behaviour of a species and tends to change rapidly when the conditions are altered. Long-distance migrants typically have longer wings than short-distance migrants and sedentary species, and long-winged species also tend to be more di...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05365.x

    authors: Schielzeth H,Forstmeier W,Kempenaers B,Ellegren H

    更新日期:2012-01-01 00:00:00

  • Population genetics of wolf spiders of fragmented habitat in the wheat belt of New South Wales.

    abstract::Possible effects of habitat fragmentation on the population genetics of a species of wolf spider (Lycosidae) from remnant Callitris woodland in the wheat belt of central western New South Wales in Australia are examined. Single-strand conformational analysis of mitochondrial cytochrome oxidase (subunit 1) was used to ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2002.01626.x

    authors: Colgan DJ,Brown S,Major RE,Christie F,Gray MR,Cassis G

    更新日期:2002-11-01 00:00:00

  • Multiple gene genealogies and AFLPs suggest cryptic speciation and long-distance dispersal in the basidiomycete Serpula himantioides (Boletales).

    abstract::Serpula himantioides (Boletales, Basidiomycota) produces thin resupinate basidiocarps on dead coniferous wood worldwide and causes damage in buildings as well. In this study, we present evidence for the existence of at least three phylogenetically defined cryptic species (referred to as Sib I-III) within the morphospe...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2005.02768.x

    authors: Kauserud H,Stensrud O,Decock C,Shalchian-Tabrizi K,Schumacher T

    更新日期:2006-02-01 00:00:00

  • The relative contributions of seed and pollen dispersal to gene flow and genetic diversity in seedlings of a tropical palm.

    abstract::Seed and pollen dispersal shape patterns of gene flow and genetic diversity in plants. Pollen is generally thought to travel longer distances than seeds, but seeds determine the ultimate location of gametes. Resolving how interactions between these two dispersal processes shape microevolutionary processes is a long-st...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14768

    authors: Browne L,Ottewell K,Sork VL,Karubian J

    更新日期:2018-08-01 00:00:00

  • Variation for neutral markers is correlated with variation for quantitative traits in the plant pathogenic fungus Mycosphaerella graminicola.

    abstract::We compared genetic variation and population differentiation at RFLP marker loci with seven quantitative characters including fungicide resistance, temperature sensitivity, pycnidial size, pycnidial density, colony size, percentage of leaves covered by pycnidia (PLACP) and percentage of leaves covered by lesions (PLAC...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2005.02638.x

    authors: Zhan J,Linde CC,Jürgens T,Merz U,Steinebrunner F,McDonald BA

    更新日期:2005-08-01 00:00:00

  • Host and geographical factors influence the thermal niche of enteric bacteria isolated from native Australian mammals.

    abstract::The thermal profiles of 118 bacterial strains, representing six species of the family Enterobacteriaceae, isolated from a variety of native Australian mammals were determined under in vitro conditions. Each of the bacterial species had a unique thermal profile and differed in their minimum or maximum temperature for g...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.0962-1083.2001.01384.x

    authors: Okada S,Gordon DM

    更新日期:2001-10-01 00:00:00

  • Population genetic consequences of geographic disjunction: a prairie plant isolated on Great Lakes alvars.

    abstract::Species may often exhibit geographic variation in population genetic structure due to contemporary and historical variation in population size and gene flow. Here, we test the predictions that populations on the margins of a species' distribution contain less genetic variation and are more differentiated than populati...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2007.03241.x

    authors: Hamilton JA,Eckert CG

    更新日期:2007-04-01 00:00:00

  • Case studies and mathematical models of ecological speciation. 3: Ecotype formation in a Swedish snail.

    abstract::Formation of partially reproductively isolated ecotypes in the rough periwinkle, Littorina saxatilis, may be a case of incipient nonallopatric ecological speciation. To better understand the dynamics of ecotype formation, its timescale, driving forces and evolutionary consequences, we developed a spatially explicit, i...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2009.04320.x

    authors: Sadedin S,Hollander J,Panova M,Johannesson K,Gavrilets S

    更新日期:2009-10-01 00:00:00

  • Anthropogenic and natural barriers affect genetic connectivity in an Alpine butterfly.

    abstract::Dispersal is a key biological process serving several functions including connectivity among populations. Habitat fragmentation caused by natural or anthropogenic structures may hamper dispersal, thereby disrupting genetic connectivity. Investigating factors affecting dispersal and gene flow is important in the curren...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15707

    authors: Trense D,Schmidt TL,Yang Q,Chung J,Hoffmann AA,Fischer K

    更新日期:2020-10-27 00:00:00

  • The toad's warts: Discordance creates bumpy expectations of mitochondrial-nuclear evolution between species.

    abstract::Discordance between the mitochondrial and nuclear genomes is a prevalent phenomenon in nature, in which the underlying processes responsible are considered to be important in shaping genetic variation in natural populations. Among the evolutionary processes that best explain such genomic mismatches incomplete lineage ...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/mec.15568

    authors: Streicher JW,Day JJ

    更新日期:2020-09-01 00:00:00

  • Genome-wide architecture of reproductive isolation in a naturally occurring hybrid zone between Mus musculus musculus and M. m. domesticus.

    abstract::Studies of a hybrid zone between two house mouse subspecies (Mus musculus musculus and M. m. domesticus) along with studies using laboratory crosses reveal a large role for the X chromosome and multiple autosomal regions in reproductive isolation as a consequence of disrupted epistasis in hybrids. One limitation of pr...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2012.05583.x

    authors: Janoušek V,Wang L,Luzynski K,Dufková P,Vyskočilová MM,Nachman MW,Munclinger P,Macholán M,Piálek J,Tucker PK

    更新日期:2012-06-01 00:00:00

  • Sequence diversity of the MHC DRB gene in the Eurasian beaver (Castor fiber).

    abstract::Major histocompatibility complex (MHC) genes, coding molecules which play an important role in immune response, are the most polymorphic genes known in vertebrates. However, MHC polymorphism in some species is limited. MHC monomorphism at several MHC class I and II loci was previously reported for two neighbouring nor...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2005.02751.x

    authors: Babik W,Durka W,Radwan J

    更新日期:2005-12-01 00:00:00

  • Colonization history, ecological shifts and diversification in the evolution of endemic Galápagos weevils.

    abstract::Mitochondrial DNA sequence data were obtained for eight species of flightless Galapaganus endemic weevils and one winged close relative in order to study their colonization history and modes of diversification in the Galápagos Archipelago. Contrary to most other insular radiations, the phylogeny estimates we recovered...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2007.03642.x

    authors: Sequeira AS,Lanteri AA,Albelo LR,Bhattacharya S,Sijapati M

    更新日期:2008-02-01 00:00:00

  • Intraspecific specialization of the generalist parasitoid Cotesia sesamiae revealed by polyDNAvirus polymorphism and associated with different Wolbachia infection.

    abstract::As a result of an intense host-parasite evolutionary arms race, parasitic wasps frequently display high levels of specialization on very few host species. For instance, in braconid wasps very few generalist species have been described. However, within this family, Cotesia sesamiae is a generalist species that is wides...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04977.x

    authors: Branca A,LE Ru BP,Vavre F,Silvain JF,Dupas S

    更新日期:2011-03-01 00:00:00

  • Habitat loss and fragmentation reduce effective gene flow by disrupting seed dispersal in a neotropical palm.

    abstract::Habitat loss and fragmentation often reduce gene flow and genetic diversity in plants by disrupting the movement of pollen and seed. However, direct comparisons of the contributions of pollen vs. seed dispersal to genetic variation in fragmented landscapes are lacking. To address this knowledge gap, we partitioned the...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14765

    authors: Browne L,Karubian J

    更新日期:2018-08-01 00:00:00