Crystal Structure of a Group I Energy Coupling Factor Vitamin Transporter S Component in Complex with Its Cognate Substrate.

Abstract:

:Energy coupling factor (ECF) transporters are responsible for the uptake of essential scarce nutrients in prokaryotes. This ATP-binding cassette transporter family comprises two subgroups that share a common architecture forming a tripartite membrane protein complex consisting of a translocation component and ATP hydrolyzing module and a substrate-capture (S) component. Here, we present the crystal structure of YkoE from Bacillus subtilis, the S component of the previously uncharacterized group I ECF transporter YkoEDC. Structural and biochemical analyses revealed the constituent residues of the thiamine-binding pocket as well as an unexpected mode of vitamin recognition. In addition, our experimental and bioinformatics data demonstrate major differences between YkoE and group II ECF transporters and indicate how group I vitamin transporter S components have diverged from other group I and group II ECF transporters.

journal_name

Cell Chem Biol

journal_title

Cell chemical biology

authors

Josts I,Almeida Hernandez Y,Andreeva A,Tidow H

doi

10.1016/j.chembiol.2016.06.008

subject

Has Abstract

pub_date

2016-07-21 00:00:00

pages

827-836

issue

7

eissn

2451-9456

issn

2451-9448

pii

S2451-9456(16)30201-X

journal_volume

23

pub_type

杂志文章
  • Directed Non-targeted Mass Spectrometry and Chemical Networking for Discovery of Eicosanoids and Related Oxylipins.

    abstract::Eicosanoids and related oxylipins are critical, small bioactive mediators of human physiology and inflammation. While ∼1,100 distinct species have been predicted to exist, to date, less than 150 of these molecules have been measured in humans, limiting our understanding of their role in human biology. Using a directed...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2018.11.015

    authors: Watrous JD,Niiranen TJ,Lagerborg KA,Henglin M,Xu YJ,Rong J,Sharma S,Vasan RS,Larson MG,Armando A,Mora S,Quehenberger O,Dennis EA,Cheng S,Jain M

    更新日期:2019-03-21 00:00:00

  • Split-miniSOG for Spatially Detecting Intracellular Protein-Protein Interactions by Correlated Light and Electron Microscopy.

    abstract::A protein-fragment complementation assay (PCA) for detecting and localizing intracellular protein-protein interactions (PPIs) was built by bisection of miniSOG, a fluorescent flavoprotein derived from the light, oxygen, voltage (LOV)-2 domain of Arabidopsis phototropin. When brought together by interacting proteins, t...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2019.07.007

    authors: Boassa D,Lemieux SP,Lev-Ram V,Hu J,Xiong Q,Phan S,Mackey M,Ramachandra R,Peace RE,Adams SR,Ellisman MH,Ngo JT

    更新日期:2019-10-17 00:00:00

  • The Convergence of Stem Cell Technologies and Phenotypic Drug Discovery.

    abstract::Recent advances in induced pluripotent stem cell technologies and phenotypic screening shape the future of bioactive small-molecule discovery. In this review we analyze the impact of small-molecule phenotypic screens on drug discovery as well as on the investigation of human development and disease biology. We further...

    journal_title:Cell chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.chembiol.2019.05.007

    authors: Friese A,Ursu A,Hochheimer A,Schöler HR,Waldmann H,Bruder JM

    更新日期:2019-08-15 00:00:00

  • Conformation Selective Antibody Enables Genome Profiling and Leads to Discovery of Parallel G-Quadruplex in Human Telomeres.

    abstract::G-quadruplexes are specialized secondary structures in nucleic acids that possess significant conformational polymorphisms. The precise G-quadruplex conformations in vivo and their relevance to biological functions remain controversial and unclear, especially for telomeric G-quadruplexes. Here, we report a novel singl...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2016.08.013

    authors: Liu HY,Zhao Q,Zhang TP,Wu Y,Xiong YX,Wang SK,Ge YL,He JH,Lv P,Ou TM,Tan JH,Li D,Gu LQ,Ren J,Zhao Y,Huang ZS

    更新日期:2016-10-20 00:00:00

  • More than One Way to Skin a Catalyst.

    abstract::In this issue of Cell Chemical Biology, Diaz et al. (2017) report a strategy to achieve temporal, spatial, and stoichiometric control over the protein kinase cAbl in living cells. They achieve this by splitting cAbl into two inactive fragments that form an active kinase upon small molecule addition, potentially provid...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2017.10.004

    authors: Michnick SW

    更新日期:2017-10-19 00:00:00

  • Probing Substrate Preferences of Depalmitoylases.

    abstract::Depalmitoylases play a crucial role in regulating dynamic protein palmitoylation. In this issue of Cell Chemical Biology, Amara et al. (2019) present fluorogenic peptide probes to analyze the activity and substrate specificity of depalmitoylases and uncover that the amino acid residues distal to the palmitoylation sit...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2018.12.008

    authors: Chen B,Wu X

    更新日期:2019-01-17 00:00:00

  • Proteome-wide Profiling of Clinical PARP Inhibitors Reveals Compound-Specific Secondary Targets.

    abstract::Poly(ADP-ribose) polymerase (PARP) inhibitors (PARPi) are a promising class of targeted cancer drugs, but their individual target profiles beyond the PARP family, which could result in differential clinical use or toxicity, are unknown. Using an unbiased, mass spectrometry-based chemical proteomics approach, we genera...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2016.10.011

    authors: Knezevic CE,Wright G,Rix LLR,Kim W,Kuenzi BM,Luo Y,Watters JM,Koomen JM,Haura EB,Monteiro AN,Radu C,Lawrence HR,Rix U

    更新日期:2016-12-22 00:00:00

  • Discovery of an Inhibitor for Bacterial 3-Mercaptopyruvate Sulfurtransferase that Synergistically Controls Bacterial Survival.

    abstract::H2S-producing enzymes in bacteria have been shown to be closely engaged in the process of microbial survival and antibiotic resistance. However, no inhibitors have been discovered for these enzymes, e.g., 3-mercaptopyruvate sulfurtransferase (MST). In the present study, we identified several classes of inhibitors for ...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2020.10.012

    authors: Croppi G,Zhou Y,Yang R,Bian Y,Zhao M,Hu Y,Ruan BH,Yu J,Wu F

    更新日期:2020-12-17 00:00:00

  • Principles of Chemical Biology: Iron and CSCs, Histone Acylation sans Enzymes, Eliciting Silent Gene Clusters, and 2'-deoxy-ADPR as a Second Messenger.

    abstract::This month: Lysosomal iron linked to cell death in cancer stem cells, non-enzymatic catalyst SynCAc for histone acylation, cytotoxins ivermectin and etoposide bring new anti-fungals out of the crypt, and 2'-deoxy-ADPR as second messenger activating TRPM2. ...

    journal_title:Cell chemical biology

    pub_type:

    doi:10.1016/j.chembiol.2017.07.016

    authors:

    更新日期:2017-08-17 00:00:00

  • Small-Molecule TLR8 Antagonists via Structure-Based Rational Design.

    abstract::Rational design of drug-like small-molecule ligands based on structural information of proteins remains a significant challenge in chemical biology. In particular, designs targeting protein-protein interfaces have met little success given the dynamic nature of the protein surfaces. Herein, we utilized the structure of...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2018.07.004

    authors: Hu Z,Tanji H,Jiang S,Zhang S,Koo K,Chan J,Sakaniwa K,Ohto U,Candia A,Shimizu T,Yin H

    更新日期:2018-10-18 00:00:00

  • GNF-2 Inhibits Dengue Virus by Targeting Abl Kinases and the Viral E Protein.

    abstract::Dengue virus infects more than 300 million people annually, yet there is no widely protective vaccine or drugs against the virus. Efforts to develop antivirals against classical targets such as the viral protease and polymerase have not yielded drugs that have advanced to the clinic. Here, we show that the allosteric ...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2016.03.010

    authors: Clark MJ,Miduturu C,Schmidt AG,Zhu X,Pitts JD,Wang J,Potisopon S,Zhang J,Wojciechowski A,Hann Chu JJ,Gray NS,Yang PL

    更新日期:2016-04-21 00:00:00

  • Epiblastin A Induces Reprogramming of Epiblast Stem Cells Into Embryonic Stem Cells by Inhibition of Casein Kinase 1.

    abstract::The discovery of novel small molecules that induce stem cell reprogramming and give efficient access to pluripotent stem cells is of major importance for potential therapeutic applications and may reveal novel insights into the factors controlling pluripotency. Chemical reprogramming of mouse epiblast stem cells (EpiS...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2016.02.015

    authors: Ursu A,Illich DJ,Takemoto Y,Porfetye AT,Zhang M,Brockmeyer A,Janning P,Watanabe N,Osada H,Vetter IR,Ziegler S,Schöler HR,Waldmann H

    更新日期:2016-04-21 00:00:00

  • BMPing Up Healing Capacity with FKBP12 Ligand.

    abstract::While the wound healing property of the macrolide FK506 is well known, the underlying mechanism has been elusive. In this issue of Cell Chemical Biology, Peiffer et al. (2019) utilize FKBP12 ligand to demonstrate that wound healing effects of FK506 occur via activation of the BMP (bone morphogenic protein) signaling p...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2019.05.001

    authors: Williams CH,Hong CC

    更新日期:2019-05-16 00:00:00

  • Dawn of a New Era of Targeted Antioxidant Therapies.

    abstract::In this issue of Cell Chemical Biology, Shah et al. (2019) report an in vitro, high-throughput assay that predicts the ability of compounds to suppress peroxidation of phospholipids. This approach provides a way to design and optimize targeted antioxidants that suppress specific oxidative event in cells, potentially o...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2019.11.003

    authors: Stockwell BR

    更新日期:2019-11-21 00:00:00

  • MRSA Isolates from United States Hospitals Carry dfrG and dfrK Resistance Genes and Succumb to Propargyl-Linked Antifolates.

    abstract::Antibiotic resistance is a rapidly evolving health concern that requires a sustained effort to understand mechanisms of resistance and to develop new agents that overcome those mechanisms. The dihydrofolate reductase (DHFR) inhibitor, trimethoprim (TMP), remains one of the most important orally administered antibiotic...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2016.11.007

    authors: Reeve SM,Scocchera EW,G-Dayanadan N,Keshipeddy S,Krucinska J,Hajian B,Ferreira J,Nailor M,Aeschlimann J,Wright DL,Anderson AC

    更新日期:2016-12-22 00:00:00

  • Systematic Metrics Depicting Cell Death Kinetics.

    abstract::In a recent issue of Cell Systems, Forcina et al. (2017) developed a scalable time-lapse analysis of cell death kinetics (STACK) method and combined it with a "lag exponential death" model to quantitatively characterize the onset and rate of cell death. STACK provides a useful quantitative tool to determine how cell d...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2017.07.006

    authors: Li Y,Yuan J

    更新日期:2017-07-20 00:00:00

  • "Expand and Click": A New Method for Labeling HIV-1 Envelope Glycoproteins.

    abstract::In this issue of Cell Chemical Biology, Sakin et al. (2017) investigate the nanoscale behavior of the HIV-1 envelope (Env) glycoprotein complex by using genetic code expansion, bioorthogonal amino acids, synthetic dyes, and click chemistry. This minimally invasive approach allows the measurement of native Env cellular...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2017.05.006

    authors: Fernandez MV,Freed EO

    更新日期:2017-05-18 00:00:00

  • Systematic Identification of Pharmacological Targets from Small-Molecule Phenotypic Screens.

    abstract::Phenotypic drug discovery offers some advantages over target-based methods, mainly because it allows drug leads to be tested in systems that more closely model distinct disease states. However, a potential disadvantage is the difficulty of linking the observed phenotype to a specific cellular target. To address this p...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2016.08.011

    authors: Liu X,Baarsma HA,Thiam CH,Montrone C,Brauner B,Fobo G,Heier JS,Duscha S,Königshoff M,Angeli V,Ruepp A,Campillos M

    更新日期:2016-10-20 00:00:00

  • Re-awakening Innate Immune Signaling in Cancer: The Development of Highly Potent ENPP1 Inhibitors.

    abstract::Activation of innate immune signaling in the tumor microenvironment is central to a successful anti-tumor immune response, and it is in large part mediated by cytosolic double-stranded DNA sensing. Here, Carozza et al. (2020b) report potent and selective inhibitors of ENPP1, a negative regulator of innate immune signa...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2020.11.001

    authors: Cogan D,Bakhoum SF

    更新日期:2020-11-19 00:00:00

  • Chemical Inhibition of Pre-mRNA Splicing in Living Saccharomyces cerevisiae.

    abstract::The spliceosome mediates precursor mRNA splicing in eukaryotes, including the model organism Saccharomyces cerevisiae (yeast). Despite decades of study, no chemical inhibitors of yeast splicing in vivo are available. We have developed a system to efficiently inhibit splicing and block proliferation in living yeast cel...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2018.11.008

    authors: Hansen SR,Nikolai BJ,Spreacker PJ,Carrocci TJ,Hoskins AA

    更新日期:2019-03-21 00:00:00

  • Customizing Functionalized Cofactor Mimics to Study the Human Pyridoxal 5'-Phosphate-Binding Proteome.

    abstract::Pyridoxal 5'-phosphate (PLP) is a versatile cofactor that catalyzes a plethora of chemical transformations within a cell. Although many human PLP-dependent enzymes (PLP-DEs) with crucial physiological and pathological roles are known, a global method enabling their cellular profiling is lacking. Here, we demonstrate t...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2019.08.003

    authors: Fux A,Pfanzelt M,Kirsch VC,Hoegl A,Sieber SA

    更新日期:2019-10-17 00:00:00

  • AKAP95 Organizes a Nuclear Microdomain to Control Local cAMP for Regulating Nuclear PKA.

    abstract::Contrary to the classic model of protein kinase A (PKA) residing outside of the nucleus, we identify a nuclear signaling complex that consists of AKAP95, PKA, and PDE4D5 and show that it forms a functional cyclic AMP (cAMP) signaling microdomain. Locally generated cAMP can accumulate within the vicinity of this comple...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2019.03.003

    authors: Clister T,Greenwald EC,Baillie GS,Zhang J

    更新日期:2019-06-20 00:00:00

  • Posttranslational Peptide-Modification Enzymes in Action: Key Roles for Leaders and Glutamate.

    abstract::In this issue of Cell Chemical Biology, Ortega et al. (2016) determine the structure of another lantibiotic dehydratase with a tRNA(Glu)-dependent mechanism of modification. Moreover, they identify a common recognition motif involved in leader peptide binding in a number of different peptide-modification enzymes. Thes...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2016.03.001

    authors: Montalbán-López M,Kuipers OP

    更新日期:2016-03-17 00:00:00

  • Lithocholic Acid Hydroxyamide Destabilizes Cyclin D1 and Induces G0/G1 Arrest by Inhibiting Deubiquitinase USP2a.

    abstract::USP2a is a deubiquitinase responsible for stabilization of cyclin D1, a crucial regulator of cell-cycle progression and a proto-oncoprotein overexpressed in numerous cancer types. Here we report that lithocholic acid (LCA) derivatives are inhibitors of USP proteins, including USP2a. The most potent LCA derivative, LCA...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2017.03.002

    authors: Magiera K,Tomala M,Kubica K,De Cesare V,Trost M,Zieba BJ,Kachamakova-Trojanowska N,Les M,Dubin G,Holak TA,Skalniak L

    更新日期:2017-04-20 00:00:00

  • No Bones About It: Small Molecules for Bone Regeneration.

    abstract::In this issue of Cell Chemical Biology, Cook et al. (2019) report a new small-molecule activator that enhances osteogenesis and skeletal regeneration in developmental and adult animal models, respectively. This discovery has therapeutic potential for healing following traumatic bone injury, as well as bone remodeling ...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2019.06.007

    authors: Chang JW,Moellering RE

    更新日期:2019-07-18 00:00:00

  • A Robust, GFP-Orthogonal Photoswitchable Inhibitor Scaffold Extends Optical Control over the Microtubule Cytoskeleton.

    abstract::Optically controlled chemical reagents, termed "photopharmaceuticals," are powerful tools for precise spatiotemporal control of proteins particularly when genetic methods, such as knockouts or optogenetics are not viable options. However, current photopharmaceutical scaffolds, such as azobenzenes are intolerant of GFP...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2020.11.007

    authors: Gao L,Meiring JCM,Kraus Y,Wranik M,Weinert T,Pritzl SD,Bingham R,Ntouliou E,Jansen KI,Olieric N,Standfuss J,Kapitein LC,Lohmüller T,Ahlfeld J,Akhmanova A,Steinmetz MO,Thorn-Seshold O

    更新日期:2020-11-27 00:00:00

  • A Bright Future for Precision Medicine: Advances in Fluorescent Chemical Probe Design and Their Clinical Application.

    abstract::The Precision Medicine Initiative aims to use advances in basic and clinical research to develop therapeutics that selectively target and kill cancer cells. Under the same doctrine of precision medicine, there is an equally important need to visualize these diseased cells to enable diagnosis, facilitate surgical resec...

    journal_title:Cell chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.chembiol.2015.12.003

    authors: Garland M,Yim JJ,Bogyo M

    更新日期:2016-01-21 00:00:00

  • Membrane-Active Rhamnolipids Overcome Aminoglycoside Resistance.

    abstract::In this issue of Cell Chemical Biology, Radlinski et al. (2019) identify Pseudomonas-derived rhamnolipids that potentiate aminoglycoside antibiotics in the eradication of antibiotic-tolerant bacterial phenotypes. Microbial physiological and mechanistic studies indicate that rhamnolipids permeabilize S. aureus membrane...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2019.09.015

    authors: Yarlagadda V,Wright GD

    更新日期:2019-10-17 00:00:00

  • Detection of Low-Abundance Metabolites in Live Cells Using an RNA Integrator.

    abstract::Genetically encoded biosensors are useful tools for detecting the presence and levels of diverse biomolecules in living cells. However, low-abundance targets are difficult to detect because they are often unable to bind and activate enough biosensors to detect using standard microscopic imaging approaches. Here we des...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2019.01.005

    authors: You M,Litke JL,Wu R,Jaffrey SR

    更新日期:2019-04-18 00:00:00

  • Ubiquinone Biosynthetic Complexes in Prokaryotes and Eukaryotes.

    abstract::Ubiquinone (UQ) is a conserved polyprenylated lipid essential to cellular respiration. Two papers, one in this issue of Cell Chemical Biology (Hajj Chehade et al., 2019) and another in Molecular Cell (Lohman et al., 2019), identify lipid-binding proteins that play crucial roles in chaperoning UQ-intermediates. ...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2019.04.005

    authors: Tsui HS,Clarke CF

    更新日期:2019-04-18 00:00:00