Bacterial Communities: Interactions to Scale.

abstract：:Background: The aim of this study was to clarify the effect of 5-aminosalicylic acid (5-ASA) treatment on gut bacterial microbiota in patients with ulcerative colitis (UC). Methods: A total of 57 UC patients, including 20 untreated and 37 5-ASA-treated, were recruited into an exploration cohort. We endoscopically coll...

journal_title：Frontiers in microbiology

authors： Xu J,Chen N,Wu Z,Song Y,Zhang Y,Wu N,Zhang F,Ren X,Liu Y

更新日期：2018-06-13 00:00:00

abstract：:Microbiota research often assumes that differences in abundance and identity of microorganisms have unique influences on host physiology. To test this concept mechanistically, germ-free mice are colonized with microbial communities to assess causation. Due to the cost, infrastructure challenges, and time-consuming nat...

journal_title：Frontiers in microbiology

authors： Trinder M,Daisley BA,Dube JS,Reid G

更新日期：2017-04-28 00:00:00

abstract：:The intestinal microbiota is a complex microbial community, with diverse and stable populations hosted by the gastrointestinal tract since birth. This ecosystem holds multiple anti-infectious, anti-inflammatory, and immune modulating roles decisive for intestinal homeostasis. Among these, colonization resistance refer...

journal_title：Frontiers in microbiology

authors： Iacob S,Iacob DG,Luminos LM

更新日期：2019-01-23 00:00:00

abstract：:Our knowledge of the regulation of genes involved in bacterial growth and stress responses is extensive; however, we have only recently begun to understand how environmental cues influence the dynamic, three-dimensional distribution of RNA polymerase (RNAP) in Escherichia coli on the level of single cell, using wide-f...

journal_title：Frontiers in microbiology

authors： Jin DJ,Cagliero C,Martin CM,Izard J,Zhou YN

更新日期：2015-05-21 00:00:00

abstract：:Bacillus amyloliquefaciens SQR9 exhibited predominantly antagonistic activities against a broad range of soilborne pathogens. The fungi-induced SQR9 extracts possess stronger antifungal activities compared with SQR9 monoculture extracts. To investigate how SQR9 fine-tunes lipopeptides (LPs) and a siderophore bacilliba...

journal_title：Frontiers in microbiology

authors： Li B,Li Q,Xu Z,Zhang N,Shen Q,Zhang R

更新日期：2014-11-21 00:00:00

abstract：:Mutations in the MEFV gene, which encodes the protein named pyrin (also called marenostrin or TRIM20), are associated with the autoinflammatory disease familial Mediterranean fever (FMF). Recent genetic and immunologic studies uncovered novel functions of pyrin and raised several new questions in relation to FMF patho...

journal_title：Frontiers in microbiology

authors： Manukyan G,Aminov R

更新日期：2016-03-31 00:00:00

abstract：:Preterm birth (PTB) is defined as the birth of an infant before 37 weeks of gestational age. It is the leading cause of perinatal morbidity and mortality worldwide. In this study, we present a comprehensive meta-analysis of vaginal microbiome in PTB. We integrated raw longitudinal 16S rRNA vaginal microbiome data from...

journal_title：Frontiers in microbiology

authors： Kosti I,Lyalina S,Pollard KS,Butte AJ,Sirota M

更新日期：2020-04-08 00:00:00

abstract：:Dermatophytes are the most common cause of onychomycosis, counting for 90% fungal nail infection. Although dermatophyte pathogens are normally susceptible to antifungal agents, onychomycosis often results in refractory chronic disease, and the formation of biofilms frequently underlines the inadequate responses and re...

journal_title：Frontiers in microbiology

authors： Chen B,Sun Y,Zhang J,Chen R,Zhong X,Wu X,Zheng L,Zhao J

更新日期：2019-06-07 00:00:00

abstract：:Coronavirus disease 2019 (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus, has emerged as a global pandemic worldwide. In this study, we used ARTIC primers-based amplicon sequencing to profile 225 SARS-CoV-2 genomes from India. Phylogenetic analysis of 202 high-quality assem...

journal_title：Frontiers in microbiology

authors： Raghav S,Ghosh A,Turuk J,Kumar S,Jha A,Madhulika S,Priyadarshini M,Biswas VK,Shyamli PS,Singh B,Singh N,Singh D,Datey A,Avula K,Smita S,Sabat J,Bhattacharya D,Kshatri JS,Vasudevan D,Suryawanshi A,Dash R,Senapati

更新日期：2020-11-23 00:00:00

abstract：:Long non-coding RNAs (lncRNAs) have been demonstrated to play essential roles in many diseases. However, few studies have shown that lncRNAs take part in the pathogenesis of Chlamydia trachomatis (C. trachomatis). Here, we used a lncRNA microarray to detect the global lncRNA expression profiles in HeLa cells transfect...

journal_title：Frontiers in microbiology

authors： Wen Y,Chen H,Luo F,Zhao L,Shu M,Su S,Zhao Y,Huang Q,Li Z

更新日期：2020-12-17 00:00:00

abstract：:Chronic inflammatory rheumatic diseases (CIRDs) are immune-mediated pathologies involving joints. To date, TNFα-blocking agents administration is the most promising therapy, although these treatments are associated with an increased Polyomavirus JC (JCPyV) reactivation, the etiological agent of the Progressive Multifo...

journal_title：Frontiers in microbiology

authors： Rodio DM,Anzivino E,Mischitelli M,Bellizzi A,Scrivo R,Scribano D,Conte G,Prezioso C,Trancassini M,Valesini G,Palamara AT,Pietropaolo V

更新日期：2016-05-10 00:00:00

abstract：:The efficiency of horizontal gene transfer, which contributes to acquisition and spread of antibiotic resistance and pathogenicity traits, depends on nucleotide sequence and different mismatch-repair (MMR) proteins participate in this process. To study how MutL and MutS MMR proteins regulate recombination across speci...

journal_title：Frontiers in microbiology

authors： Carrasco B,Serrano E,Martín-González A,Moreno-Herrero F,Alonso JC

更新日期：2019-02-13 00:00:00

abstract：:Microbial communities in the endosphere of Salicaceae plants, poplar (Populus trichocarpa) and willow (Salix sitchensis), have been demonstrated to be important for plant growth promotion, protection from biotic and abiotic stresses, and degradation of toxic compounds. Our study aimed to investigate bio-control activi...

journal_title：Frontiers in microbiology

authors： Kandel SL,Firrincieli A,Joubert PM,Okubara PA,Leston ND,McGeorge KM,Mugnozza GS,Harfouche A,Kim SH,Doty SL

更新日期：2017-03-13 00:00:00

abstract：:Microbial communities inhabiting high-altitude spring ecosystems are subjected to extreme changes in solar irradiance and temperature throughout the diel cycle. Here, using 16S rRNA gene tag pyrosequencing (cDNA) we determined the composition of actively transcribing bacteria from spring waters experimentally exposed ...

journal_title：Frontiers in microbiology

authors： Molina V,Hernández K,Dorador C,Eissler Y,Hengst M,Pérez V,Harrod C

更新日期：2016-11-17 00:00:00

abstract：:Despite increasing reports of low-level linezolid-resistant enterococci worldwide, the mechanism of this resistance remains poorly understood. Previous transcriptome studies of low-level linezolid-resistant Enterococcus faecalis isolates have demonstrated a number of significantly up-regulated genes potentially involv...

journal_title：Frontiers in microbiology

authors： Yan J,Xia Y,Yang M,Zou J,Chen Y,Zhang D,Ma L

更新日期：2018-07-27 00:00:00

abstract：:Coastal areas form the major habitat of brown macroalgae, photosynthetic multicellular eukaryotes that have great ecological value and industrial potential. Macroalgal growth, development, and physiology are influenced by the microbial community they accommodate. Studying the algal microbiome should thus increase our ...

journal_title：Frontiers in microbiology

authors： KleinJan H,Jeanthon C,Boyen C,Dittami SM

更新日期：2017-12-11 00:00:00

abstract：:Microorganisms are capable of synthesizing a plethora of secondary metabolites including the long-overlooked volatile organic compounds. Little knowledge has been accumulated regarding the regulation of the biosynthesis of such mVOCs. The emission of the unique compound sodorifen of Serratia plymuthica isolates was si...

journal_title：Frontiers in microbiology

authors： Magnus N,Weise T,Piechulla B

更新日期：2017-12-19 00:00:00

abstract：:The challenge in studying the surface architecture of different microbial pathogens is to integrate the most current biochemical, spectroscopic, microscopic, and processing techniques. Individually these methods have insufficient sensitivity to reveal complex structures, such as branched, large, viscous polymers with ...

journal_title：Frontiers in microbiology

authors： Frases S,Viana NB,Casadevall A

更新日期：2011-10-10 00:00:00

abstract：:Bacillus cereus is a gram-positive pathogen mainly known to evoke two types of foodborne poisonings. The diarrheal syndrome is caused by enterotoxins produced during growth in the intestine. In contrast, the emetic type is caused by the dodecadepsipeptide cereulide pre-formed in food. Usually, both diseases are self-l...

journal_title：Frontiers in microbiology

authors： Bauer T,Sipos W,Stark TD,Käser T,Knecht C,Brunthaler R,Saalmüller A,Hofmann T,Ehling-Schulz M

更新日期：2018-11-07 00:00:00

abstract：:Cereals-derived foods represent a key constituent in the diet of many populations. In particular, pasta is consumed in large quantities throughout the world in reason of its nutritive importance, containing significant amounts of complex carbohydrates, proteins, B-vitamins, and iron. Lactic acid bacteria (LAB) are a h...

journal_title：Frontiers in microbiology

authors： Capozzi V,Russo P,Fragasso M,De Vita P,Fiocco D,Spano G

更新日期：2012-03-15 00:00:00

abstract：:Benthic diatoms are dominant primary producers in intertidal mudflats and constitute a major source of organic carbon to consumers and decomposers residing within these ecosystems. They typically form biofilms whose species richness, community composition and productivity can vary in response to environmental drivers ...

journal_title：Frontiers in microbiology

authors： Koedooder C,Stock W,Willems A,Mangelinckx S,De Troch M,Vyverman W,Sabbe K

更新日期：2019-06-05 00:00:00

abstract：:Agricultural ponds have a great potential as a means of capture and storage of water for irrigation. However, pond topography (small size, shallow depth) leaves them susceptible to environmental, agricultural, and anthropogenic exposures that may influence microbial dynamics. Therefore, the aim of this project was to ...

journal_title：Frontiers in microbiology

authors： Chopyk J,Allard S,Nasko DJ,Bui A,Mongodin EF,Sapkota AR

更新日期：2018-04-24 00:00:00

abstract：:Application of probiotics in the food industry has been hampered by their sensitivity to challenging conditions that reduce their vitality in food matrices. A lot of attempts have been made to promote the growth of these probiotics in the aspect of nutrition demands. Among the other adverse conditions, oxygen stress c...

journal_title：Frontiers in microbiology

authors： Yan M,Wang BH,Fu X,Gui M,Wang G,Zhao L,Li R,You C,Liu Z

更新日期：2020-07-07 00:00:00

abstract：:The present study was carried out to understand the adaptive strategies developed by Stenotrophomonas maltophilia for chronic colonization of the cystic fibrosis (CF) lung. For this purpose, 13 temporally isolated strains from a single CF patient chronically infected over a 10-year period were systematically character...

journal_title：Frontiers in microbiology

authors： Pompilio A,Crocetta V,Ghosh D,Chakrabarti M,Gherardi G,Vitali LA,Fiscarelli E,Di Bonaventura G

更新日期：2016-09-30 00:00:00

abstract：:The ocean is considered to be a great reservoir of biodiversity. Microbial communities in marine environments are ecologically relevant as intermediaries of energy, and play an important role in nutrient regeneration cycles as decomposers of dead and decaying organic matter. In this sense, marine-derived fungi can be ...

journal_title：Frontiers in microbiology

authors： Bonugli-Santos RC,Dos Santos Vasconcelos MR,Passarini MR,Vieira GA,Lopes VC,Mainardi PH,Dos Santos JA,de Azevedo Duarte L,Otero IV,da Silva Yoshida AM,Feitosa VA,Pessoa A Jr,Sette LD

更新日期：2015-04-10 00:00:00

abstract：:Extracellular DNA is found in all environments and is a dynamic component of the microbial ecosystem. Microbial cells produce and interact with extracellular DNA through many endogenous mechanisms. Extracellular DNA is processed and internalized for use as genetic information and as a major source of macronutrients, a...

journal_title：Frontiers in microbiology

authors： Chimileski S,Dolas K,Naor A,Gophna U,Papke RT

更新日期：2014-02-20 00:00:00

abstract：:Chlamydia muridarum, an obligate intracellular pathogen, was used to establish a murine model of female upper genital tract infection by Chlamydia trachomatis. TC0668 in C. muridarum is a hypothetical chromosomal virulence protein that is involved in upper genital tract pathogenesis. The infection of mice with the C. ...

journal_title：Frontiers in microbiology

authors： Wang Y,Arthur EW,Liu N,Li X,Xiang W,Maxwell A,Li Z,Zhou Z

更新日期：2019-11-07 00:00:00

abstract：:Bacterial species differ greatly in the number and location of the rRNA operons which may be present in the bacterial chromosomes and plasmids. Most bacterial species contain more than one ribosomal RNA operon copy in their genomes, with some species containing up to 15 such copies. We review the number and location o...

journal_title：Frontiers in microbiology

authors： Espejo RT,Plaza N

更新日期：2018-06-08 00:00:00

abstract：:Bacteriocins are proteinaceous antibacterial compounds, produced by diverse bacteria, which have been successfully used as: (i) food biopreservative; (ii) anti-biofilm agents; and (iii) additives or alternatives to the currently existing antibiotics, to minimize the risk of emergence of resistant strains. However, the...

journal_title：Frontiers in microbiology

authors： Fahim HA,Khairalla AS,El-Gendy AO

更新日期：2016-09-16 00:00:00

abstract：:Single molecule, real-time (SMRT) sequencing was used to characterize mitochondrial (mt) genome of Ophiocordyceps sinensis and to analyze the mt genome-wide pattern of epigenetic DNA modification. The complete mt genome of O. sinensis, with a size of 157,539 bp, is the fourth largest Ascomycota mt genome sequenced to ...

journal_title：Frontiers in microbiology

authors： Kang X,Hu L,Shen P,Li R,Liu D

更新日期：2017-07-27 00:00:00