Abstract:
:For an ordinary least-squares regression model, the coefficient of determination (R2) describes the proportion (or percentage) of variance of the response variable explained by the model, and is a widely accepted summary measure of predictive power. A number of R2-analogues are available as summary measures of predictive power associated with logistic regression models, including models of disease risk. Tjur's R2 and McFadden's R2 are of particular interest in this context. Both of these metrics have transparent derivations, which reveal that they apply to different aspects of model evaluation. Tjur's R2 is a measure of separation between (known) actual states (e.g., gold standard determinations of "healthy" or "diseased" status) whereas McFadden's R2 is a measure of separation between predicted states (e.g., forecasts of disease status based on models of disease risk). This clarifies their interpretation in the context of evaluation of logistic regression models of disease risk. In addition, versions of both Tjur's R2 and McFadden's R2 may be obtained from analyses of disease risk that are not preceded by logistic regression analysis. Tjur's R2 and McFadden's R2 are shown to be useful, distinct summary measures of predictive power for epidemiological models of disease risk.
journal_name
Phytopathologyjournal_title
Phytopathologyauthors
Hughes G,Choudhury RA,McRoberts Ndoi
10.1094/PHYTO-09-18-0356-LEsubject
Has Abstractpub_date
2019-05-01 00:00:00pages
712-715issue
5eissn
0031-949Xissn
1943-7684journal_volume
109pub_type
信件相关文献
PHYTOPATHOLOGY文献大全abstract::Dark pigmented fungi of the Gaeumannomyces-Phialophora complex were isolated from the roots of wheat grown in fields in eastern Washington State. These fungi were identified as Phialophora spp. on the basis of morphological and genetic characteristics. The isolates produced lobed hyphopodia on wheat coleoptiles, phial...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-100-5-0404
更新日期:2010-05-01 00:00:00
abstract::Plants have developed complex defense mechanisms to protect themselves against pathogens. A wide-host-range fungus, Austropuccinia psidii, which has caused severe damage to ecosystems and plantations worldwide, is a major threat to Australian ecosystems dominated by members of the family Myrtaceae. In particular, the ...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-09-17-0307-R
更新日期:2018-04-01 00:00:00
abstract::ABSTRACT Diseases of cacao, Theobroma cacao, account for losses of more than 30% of the potential crop. These losses have caused a steady decline in production and a reduction in bean quality in almost all the cacao-producing areas in the world, especially in small-holder farms in Latin America and West Africa. The mo...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-97-12-1658
更新日期:2007-12-01 00:00:00
abstract::ABSTRACT Greasy spot, caused by Mycosphaerella citri, produces a leaf spot disease affecting all citrus species in Florida and the Caribbean Basin. M. citri produces pseudothecia and ascospores, which are considered the principal source of inoculum, in decomposing leaves on the grove floor. In studies using a computer...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO.2003.93.8.1031
更新日期:2003-08-01 00:00:00
abstract::Rice sheath blight (ShB), caused by the soilborne pathogen Rhizoctonia solani, annually causes severe losses in yield and quality in many rice production areas worldwide. Jasmine 85 is an indica cultivar that has proven to have a high level of resistance to this pathogen. The objective of this study was to determine t...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-99-9-1078
更新日期:2009-09-01 00:00:00
abstract::Venturia effusa (syn. Fusicladium effusum), causal agent of pecan scab, is the most prevalent pathogen of pecan (Carya illinoinensis), causing severe yield losses in the southeastern United States. V. effusa is currently known only by its asexual (conidial) stage. However, the degree and distribution of genetic divers...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-07-17-0233-R
更新日期:2018-07-01 00:00:00
abstract::ABSTRACT Apple fruit tissues infected with Botryosphaeria dothidea were examined by transmission electron microscopy using susceptible cv. Fuji and resistant cv. Jonathan. Immature (green) and mature (red) fruits of cv. Fuji with restricted or expanding lesions were also examined to reveal subcellular characteristics ...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO.2001.91.2.165
更新日期:2001-02-01 00:00:00
abstract::ABSTRACT Sudden death syndrome (SDS) of soybean is caused by the soilborne Fusarium solani f. sp. glycines (synonym F. virguliforme). In a sequential approach, two multifactor factorial-design microplot experiments were conducted to investigate the effects of fungal infestation levels and soil moisture on both root ne...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-96-0763
更新日期:2006-07-01 00:00:00
abstract::ABSTRACT Liquid swine manure added to acidic soils killed microsclerotia of the wilt fungus Verticillium dahliae. We investigated whether volatile fatty acids (VFAs) in the manure were responsible for this toxicity. The survival of microsclerotia was determined after exposure to various dilutions of manure or its VFA ...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO.2002.92.5.548
更新日期:2002-05-01 00:00:00
abstract::Tamarillo, or tree tomato (Solanum betaceum), is a perennial small tree or shrub species cultivated in subtropical areas for fresh fruit and juice production. In Ecuador, tamarillo orchards are affected by several viruses, with one previously identified as potato virus Y (PVY); however, the specific strain composition...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-04-20-0111-R
更新日期:2020-09-01 00:00:00
abstract::Resin obtained from Pinus radiata and five monoterpene components of resin (limonene, α-pinene, β-pinene, camphene, and myrcene) were tested to determine their effects on mycelial growth and germination and survival of spores of Fusarium circinatum, the cause of pitch canker in pine, and F. temperatum, which is interf...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-02-14-0027-R
更新日期:2015-01-01 00:00:00
abstract::ABSTRACT Alternaria alternata is the causal organism of core rot decay symptoms in susceptible cv. Red Delicious but not in resistant cv. Golden Delicious. The two cultivars did not differ in natural colonization of the style and ovary during the first week after full bloom; colonization of the ovary in the susceptibl...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-97-11-1415
更新日期:2007-11-01 00:00:00
abstract::ABSTRACT Crown rust (Puccinia coronata) in indigenous populations of Avena sterilis has been cited as an example of stability of wild pathosystems that consist of natural mixtures of resistance and virulence. This study confirmed that virulence/avirulence polymorphisms in P. coronata on A. sterilis in Israel are highl...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO.2004.94.5.505
更新日期:2004-05-01 00:00:00
abstract::ABSTRACT Barley has two flowering types, chasmogamous (open-flowering) and cleistogamous (closed-flowering). We examined the effect of the timing of Fusarium graminearum infection on Fusarium head blight (FHB) and mycotoxin accumulation in barley cultivars with different flowering types using greenhouse experiments. I...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-97-9-1054
更新日期:2007-09-01 00:00:00
abstract::Stalk rot is one of the most serious and widespread diseases in maize, and effective control measures are currently lacking. Therefore, this study aimed to develop a new biological agent to manage this disease. An antagonistic bacterial strain, TA-1, was isolated from rhizosphere soil and identified as Bacillus methyl...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-07-18-0220-R
更新日期:2019-04-01 00:00:00
abstract::ABSTRACT The study was conducted to evaluate the potential of induced resistance to infestation of sunflower (Helianthus annuus L.) by the parasitic weed Orobanche cumana Wallr. Treatment of sunflower seeds with 40 ppm of benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester (BTH) for 36 h completely prevented inf...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO.2002.92.1.59
更新日期:2002-01-01 00:00:00
abstract::Bacterial disease management is a challenge for modern agriculture due to rapid changes in pathogen populations. Genome sequences for hosts and pathogens provide detailed information that facilitates effector-based breeding strategies. Tomato genotypes have gene-for-gene resistance to the bacterial spot pathogen Xanth...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-03-16-0119-FI
更新日期:2016-10-01 00:00:00
abstract::ABSTRACT Comparison of a sampling of complementary DNA (cDNA) sequences from the Florida citrus tristeza virus (CTV) isolates T3 and T30 to the sequence of the genome of the Israeli isolate VT showed a relatively consistent or symmetrical distribution of nucleotide sequence identity in both the 5' and 3' regions of th...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO.1999.89.4.336
更新日期:1999-04-01 00:00:00
abstract::ABSTRACT Culture filtrates of a pathogenic isolate (IT37) of Stemphylium vesicarium, causing brown spot of European pear, induced veinal necrosis only on pear leaves susceptible to the pathogen. Two host-specific toxins, SV-toxins I and II, were purified from culture filtrates of IT37 by successively using Amberlite X...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO.1999.89.10.947
更新日期:1999-10-01 00:00:00
abstract::ABSTRACT A previously undescribed leaf spot disease of banana has been discovered in southern and Southeast Asia. The fungus identified as the causal agent of this leaf spot has a Mycosphaerella teleomorph stage and a Septoria anamorph stage. Isolation and reinoculation of the fungus to banana reproduced symptoms and ...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO.2000.90.8.884
更新日期:2000-08-01 00:00:00
abstract::Phytophthora capsici causes significant losses to vegetable production worldwide. Pyrimorph, a new carboxylic acid amide fungicide, has been registered to control P. capsici in China. A mutation (Q1077K) in cellulose synthase 3 has been reported to confer resistance to pyrimorph. In this study, we measured the competi...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-07-13-0185-R
更新日期:2014-03-01 00:00:00
abstract::The most economically important plant pathogens in the genus Pseudoperonospora (family Peronosporaceae) are Pseudoperonospora cubensis and P. humuli, causal agents of downy mildew on cucurbits and hop, respectively. Recently, P. humuli was reduced to a taxonomic synonym of P. cubensis based on internal transcribed spa...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-10-10-0270
更新日期:2011-07-01 00:00:00
abstract::ABSTRACT Poplar leaf rust caused by Melampsora medusae f. sp. deltoidae is a widespread disease in North America, where epidemics occur within zones of sympatry and allopatry of telial hosts (Populus spp.) and aecial hosts (Larix spp.). To test the hypothesis that epidemics originate in the zone of sympatry where the ...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-97-5-0603
更新日期:2007-05-01 00:00:00
abstract::The manner in which deoxynivalenol (DON) and nivalenol (NIV) accumulation progresses in wheat grain infected with Fusarium graminearum and the influence of the time of infection on the accumulation of toxins were investigated. Four cultivars were tested in a greenhouse environment, where the plants were spray inoculat...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-100-8-0763
更新日期:2010-08-01 00:00:00
abstract::ABSTRACT The use of host diversity as a tool for management of potato late blight has not been viewed as promising in the past. But the increasing importance of late blight internationally has brought new consideration to all potential management tools. We studied the effect of host diversity on epidemics of potato la...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO.2000.90.12.1307
更新日期:2000-12-01 00:00:00
abstract::ABSTRACT Disease assessments and cytological investigations provided valuable information on the modes of action and efficacies of two prophylactic compounds, Milsana and benzothiadiazole (BTH), against powdery mildew development on long English cucumber. Milsana application significantly reduced disease incidence rel...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO.1999.89.9.728
更新日期:1999-09-01 00:00:00
abstract::It is well described that viral infections stimulate the emission of plant volatiles able to recruit viral vectors thereby promoting virus spread. In contrast, much less is known on the effects that emitted volatiles may have on the metabolism of healthy neighboring plants, which are potential targets for new infectio...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-07-20-0301-R
更新日期:2020-12-01 00:00:00
abstract::ABSTRACT The aggressiveness of strains of Xanthomonas axonopodis pv. citri on seven Citrus species, including Citrus sinensis (navel orange), C. paradisi (grapefruit), C. unshiu (Satsuma mandarin), C. junos (Yuzu), C. aurantifolia ('Mexican' lime), C. tachibana (Tachibana), and C. grandis (pummelo: 'Otachibana', 'Banp...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO.2000.90.12.1383
更新日期:2000-12-01 00:00:00
abstract::Xanthomonas oryzae pv. oryzicola causes bacterial leaf streak in rice, a destructive disease worldwide. In this study, six putative hypothetical secreted proteins, which were absent in X. oryzae pv. oryzae, were detected from X. oryzae pv. oryzicola strain BLS256. Disruption-based mutagenesis study revealed that one o...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-02-12-0020-R
更新日期:2012-09-01 00:00:00
abstract::Effects of the root-knot nematode Meloidogyne incognita and the fungal pathogen Thielaviopsis basicola on cotton seedling growth and root morphology were evaluated in controlled environmental experiments. Four pathogen treatments, including noninfested soil, soil infested with M. incognita, soil infested with T. basic...
journal_title:Phytopathology
pub_type: 杂志文章
doi:10.1094/PHYTO-06-12-0120-R
更新日期:2014-05-01 00:00:00