CRISPR Tools for Physiology and Cell State Changes: Potential of Transcriptional Engineering and Epigenome Editing.

Abstract:

:Given the large amount of genome-wide data that have been collected during the last decades, a good understanding of how and why cells change during development, homeostasis, and disease might be expected. Unfortunately, the opposite is true; triggers that cause cellular state changes remain elusive, and the underlying molecular mechanisms are poorly understood. Although genes with the potential to influence cell states are known, the historic dependency on methods that manipulate gene expression outside the endogenous chromatin context has prevented us from understanding how cells organize, interpret, and protect cellular programs. Fortunately, recent methodological innovations are now providing options to answer these outstanding questions, by allowing to target and manipulate individual genomic and epigenomic loci. In particular, three experimental approaches are now feasible due to DNA targeting tools, namely, activation and/or repression of master transcription factors in their endogenous chromatin context; targeting transcription factors to endogenous, alternative, or inaccessible sites; and finally, functional manipulation of the chromatin context. In this article, we discuss the molecular basis of DNA targeting tools and review the potential of these new technologies before we summarize how these have already been used for the manipulation of cellular states and hypothesize about future applications.

journal_name

Physiol Rev

journal_title

Physiological reviews

authors

Breunig CT,Köferle A,Neuner AM,Wiesbeck MF,Baumann V,Stricker SH

doi

10.1152/physrev.00034.2019

subject

Has Abstract

pub_date

2021-01-01 00:00:00

pages

177-211

issue

1

eissn

0031-9333

issn

1522-1210

journal_volume

101

pub_type

杂志文章
  • Vascular actions of calcitonin gene-related peptide and adrenomedullin.

    abstract::This review summarizes the receptor-mediated vascular activities of calcitonin gene-related peptide (CGRP) and the structurally related peptide adrenomedullin (AM). CGRP is a 37-amino acid neuropeptide, primarily released from sensory nerves, whilst AM is produced by stimulated vascular cells, and amylin is secreted f...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00037.2003

    authors: Brain SD,Grant AD

    更新日期:2004-07-01 00:00:00

  • Beyond neurons: evidence that immune and glial cells contribute to pathological pain states.

    abstract::Chronic pain can occur after peripheral nerve injury, infection, or inflammation. Under such neuropathic pain conditions, sensory processing in the affected body region becomes grossly abnormal. Despite decades of research, currently available drugs largely fail to control such pain. This review explores the possibili...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00011.2002

    authors: Watkins LR,Maier SF

    更新日期:2002-10-01 00:00:00

  • Myelin in the Central Nervous System: Structure, Function, and Pathology.

    abstract::Oligodendrocytes generate multiple layers of myelin membrane around axons of the central nervous system to enable fast and efficient nerve conduction. Until recently, saltatory nerve conduction was considered the only purpose of myelin, but it is now clear that myelin has more functions. In fact, myelinating oligodend...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00031.2018

    authors: Stadelmann C,Timmler S,Barrantes-Freer A,Simons M

    更新日期:2019-07-01 00:00:00

  • Regulatory binding partners and complexes of NHE3.

    abstract::NHE3 is the brush-border (BB) Na(+)/H(+) exchanger of small intestine, colon, and renal proximal tubule which is involved in large amounts of neutral Na(+) absorption. NHE3 is a highly regulated transporter, being both stimulated and inhibited by signaling that mimics the postprandial state. It also undergoes downregu...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00030.2006

    authors: Donowitz M,Li X

    更新日期:2007-07-01 00:00:00

  • Renal autoregulation in health and disease.

    abstract::Intrarenal autoregulatory mechanisms maintain renal blood flow (RBF) and glomerular filtration rate (GFR) independent of renal perfusion pressure (RPP) over a defined range (80-180 mmHg). Such autoregulation is mediated largely by the myogenic and the macula densa-tubuloglomerular feedback (MD-TGF) responses that regu...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00042.2012

    authors: Carlström M,Wilcox CS,Arendshorst WJ

    更新日期:2015-04-01 00:00:00

  • Endocytosis, intracellular transport, and cytotoxic action of Shiga toxin and ricin.

    abstract::Protein toxins such as ricin and Shiga toxin with intracellular targets have to be endocytosed and translocated to the cytosol to inhibit the protein synthesis and thereby kill the cell. Ricin is internalized by both clathrin-dependent and -independent endocytic mechanisms, whereas Shiga toxin seems to be taken up exc...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.1996.76.4.949

    authors: Sandvig K,van Deurs B

    更新日期:1996-10-01 00:00:00

  • Regulation of wound healing by growth factors and cytokines.

    abstract::Cutaneous wound healing is a complex process involving blood clotting, inflammation, new tissue formation, and finally tissue remodeling. It is well described at the histological level, but the genes that regulate skin repair have only partially been identified. Many experimental and clinical studies have demonstrated...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.2003.83.3.835

    authors: Werner S,Grose R

    更新日期:2003-07-01 00:00:00

  • Angiotensin, thirst, and sodium appetite.

    abstract::Angiotensin (ANG) II is a powerful and phylogenetically widespread stimulus to thirst and sodium appetite. When it is injected directly into sensitive areas of the brain, it causes an immediate increase in water intake followed by a slower increase in NaCl intake. Drinking is vigorous, highly motivated, and rapidly co...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.1998.78.3.583

    authors: Fitzsimons JT

    更新日期:1998-07-01 00:00:00

  • Properties and regulation of the minK potassium channel protein.

    abstract::The minK gene encodes a protein of 130 amino acids that has a single transmembrane segment and is expressed in many tissues including heart, uterus, and kidney. When Xenopus oocytes are injected with minK mRNA, a very slowly activating voltage-dependent potassium current is induced in these cells. The induced channels...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.1997.77.3.627

    authors: Kaczmarek LK,Blumenthal EM

    更新日期:1997-07-01 00:00:00

  • Cardiac myocyte cell cycle control in development, disease, and regeneration.

    abstract::Cardiac myocytes rapidly proliferate during fetal life but exit the cell cycle soon after birth in mammals. Although the extent to which adult cardiac myocytes are capable of cell cycle reentry is controversial and species-specific differences may exist, it appears that for the vast majority of adult cardiac myocytes ...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00032.2006

    authors: Ahuja P,Sdek P,MacLellan WR

    更新日期:2007-04-01 00:00:00

  • Molecular and cellular mechanisms of myocardial stunning.

    abstract::The past two decades have witnessed an explosive growth of knowledge regarding postischemic myocardial dysfunction or myocardial "stunning." The purpose of this review is to summarize current information regarding the pathophysiology and pathogenesis of this phenomenon. Myocardial stunning should not be regarded as a ...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.1999.79.2.609

    authors: Bolli R,Marbán E

    更新日期:1999-04-01 00:00:00

  • Fluorescent proteins and their applications in imaging living cells and tissues.

    abstract::Green fluorescent protein (GFP) from the jellyfish Aequorea victoria and its homologs from diverse marine animals are widely used as universal genetically encoded fluorescent labels. Many laboratories have focused their efforts on identification and development of fluorescent proteins with novel characteristics and en...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00038.2009

    authors: Chudakov DM,Matz MV,Lukyanov S,Lukyanov KA

    更新日期:2010-07-01 00:00:00

  • Basic mechanisms of cardiac impulse propagation and associated arrhythmias.

    abstract::Propagation of excitation in the heart involves action potential (AP) generation by cardiac cells and its propagation in the multicellular tissue. AP conduction is the outcome of complex interactions between cellular electrical activity, electrical cell-to-cell communication, and the cardiac tissue structure. As shown...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00025.2003

    authors: Kléber AG,Rudy Y

    更新日期:2004-04-01 00:00:00

  • Biosynthesis and degradation of CFTR.

    abstract::Biosynthesis and Degradation of CFTR. Physiol. Rev. 79, Suppl.: S167-S173, 1999. - Many of the mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) gene that cause cystic fibrosis interfere with the folding and biosynthetic processing of nascent CFTR molecules in the endoplasmic reticulum. Mutat...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.1999.79.1.S167

    authors: Kopito RR

    更新日期:1999-01-01 00:00:00

  • Microlymphatics and lymph flow.

    abstract::A careful review of several different organs shows that with the information available today the beginnings of the microlymphatics in the tissue consist of endothelialized tubes only. Lymphatic smooth muscle within the collecting lymphatics appears further downstream, in some organs only outside the parenchyma. This p...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.1990.70.4.987

    authors: Schmid-Schönbein GW

    更新日期:1990-10-01 00:00:00

  • Current Principles of Motor Control, with Special Reference to Vertebrate Locomotion.

    abstract::The vertebrate control of locomotion involves all levels of the nervous system from cortex to the spinal cord. Here, we aim to cover all main aspects of this complex behavior, from the operation of the microcircuits in the spinal cord to the systems and behavioral levels and extend from mammalian locomotion to the bas...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00015.2019

    authors: Grillner S,El Manira A

    更新日期:2020-01-01 00:00:00

  • Plastic synaptic networks of the amygdala for the acquisition, expression, and extinction of conditioned fear.

    abstract::The last 10 years have witnessed a surge of interest for the mechanisms underlying the acquisition and extinction of classically conditioned fear responses. In part, this results from the realization that abnormalities in fear learning mechanisms likely participate in the development and/or maintenance of human anxiet...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00037.2009

    authors: Pape HC,Pare D

    更新日期:2010-04-01 00:00:00

  • The new biology of gastrointestinal hormones.

    abstract::The classic concept of gastrointestinal endocrinology is that of a few peptides released to the circulation from endocrine cells, which are interspersed among other mucosal cells in the upper gastrointestinal tract. Today more than 30 peptide hormone genes are known to be expressed throughout the digestive tract, whic...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.1998.78.4.1087

    authors: Rehfeld JF

    更新日期:1998-10-01 00:00:00

  • Protein trafficking and polarity in kidney epithelium: from cell biology to physiology.

    abstract::The transepithelial movement of fluids, electrolytes, and larger molecules is achieved by the activity of a host of specialized transporting proteins, including enzymes, receptors, and channels, that are located on either the apical, basal, or lateral plasma membrane domains of epithelial cells. In the kidney as well ...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.1996.76.1.245

    authors: Brown D,Stow JL

    更新日期:1996-01-01 00:00:00

  • Signaling mechanisms regulating endothelial permeability.

    abstract::The microvascular endothelial cell monolayer localized at the critical interface between the blood and vessel wall has the vital functions of regulating tissue fluid balance and supplying the essential nutrients needed for the survival of the organism. The endothelial cell is an exquisite "sensor" that responds to div...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00012.2005

    authors: Mehta D,Malik AB

    更新日期:2006-01-01 00:00:00

  • Regulation of amino acid and glucose transporters in endothelial and smooth muscle cells.

    abstract::While transport processes for amino acids and glucose have long been known to be expressed in the luminal and abluminal membranes of the endothelium comprising the blood-brain and blood-retinal barriers, it is only within the last decades that endothelial and smooth muscle cells derived from peripheral vascular beds h...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00022.2002

    authors: Mann GE,Yudilevich DL,Sobrevia L

    更新日期:2003-01-01 00:00:00

  • Endocannabinoid-mediated control of synaptic transmission.

    abstract::The discovery of cannabinoid receptors and subsequent identification of their endogenous ligands (endocannabinoids) in early 1990s have greatly accelerated research on cannabinoid actions in the brain. Then, the discovery in 2001 that endocannabinoids mediate retrograde synaptic signaling has opened up a new era for c...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00019.2008

    authors: Kano M,Ohno-Shosaku T,Hashimotodani Y,Uchigashima M,Watanabe M

    更新日期:2009-01-01 00:00:00

  • Mechanisms of cancer cachexia.

    abstract::Up to 50% of cancer patients suffer from a progressive atrophy of adipose tissue and skeletal muscle, called cachexia, resulting in weight loss, a reduced quality of life, and a shortened survival time. Anorexia often accompanies cachexia, but appears not to be responsible for the tissue loss, particularly lean body m...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00016.2008

    authors: Tisdale MJ

    更新日期:2009-04-01 00:00:00

  • Mammalian G proteins and their cell type specific functions.

    abstract::Heterotrimeric G proteins are key players in transmembrane signaling by coupling a huge variety of receptors to channel proteins, enzymes, and other effector molecules. Multiple subforms of G proteins together with receptors, effectors, and various regulatory proteins represent the components of a highly versatile sig...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00003.2005

    authors: Wettschureck N,Offermanns S

    更新日期:2005-10-01 00:00:00

  • Vascular smooth muscle growth: autocrine growth mechanisms.

    abstract::Vascular smooth muscle cells (VSMC) exhibit several growth responses to agonists that regulate their function including proliferation (hyperplasia with an increase in cell number), hypertrophy (an increase in cell size without change in DNA content), endoreduplication (an increase in DNA content and usually size), and...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.2001.81.3.999

    authors: Berk BC

    更新日期:2001-07-01 00:00:00

  • Mammalian distal tubule: physiology, pathophysiology, and molecular anatomy.

    abstract::The distal tubule of the mammalian kidney, defined as the region between the macula densa and the collecting duct, is morphologically and functionally heterogeneous. This heterogeneity has stymied attempts to define functional properties of individual cell types and has led to controversy concerning mechanisms and reg...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.2000.80.1.277

    authors: Reilly RF,Ellison DH

    更新日期:2000-01-01 00:00:00

  • Cyclic nucleotide phosphodiesterases: functional implications of multiple isoforms.

    abstract::In the last few years there has been a veritable explosion of knowledge about cyclic nucleotide phosphodiesterases. In particular, the accumulating data showing that there are a large number of different phosphodiesterase isozymes have triggered an equally large increase in interest about these enzymes. At least seven...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.1995.75.4.725

    authors: Beavo JA

    更新日期:1995-10-01 00:00:00

  • Mitogen-activated protein kinase: conservation of a three-kinase module from yeast to human.

    abstract::Mitogen-activated protein kinases (MAPK) are serine-threonine protein kinases that are activated by diverse stimuli ranging from cytokines, growth factors, neurotransmitters, hormones, cellular stress, and cell adherence. Mitogen-activated protein kinases are expressed in all eukaryotic cells. The basic assembly of MA...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.1999.79.1.143

    authors: Widmann C,Gibson S,Jarpe MB,Johnson GL

    更新日期:1999-01-01 00:00:00

  • Leukocyte homing, fate, and function are controlled by retinoic acid.

    abstract::Although vitamin A was recognized as an "anti-infective vitamin" over 90 years ago, the mechanism of how vitamin A regulates immunity is only beginning to be understood. Early studies which focused on the immune responses in vitamin A-deficient (VAD) animals clearly demonstrated compromised immunity and consequently i...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00032.2013

    authors: Guo Y,Brown C,Ortiz C,Noelle RJ

    更新日期:2015-01-01 00:00:00

  • Plastic changes in the central auditory system after hearing loss, restoration of function, and during learning.

    abstract::Traditionally the auditory system was considered a hard-wired sensory system; this view has been challenged in recent years in light of the plasticity of other sensory systems, particularly the visual and somatosensory systems. Practical experience in clinical audiology together with the use of prosthetic devices, suc...

    journal_title:Physiological reviews

    pub_type: 杂志文章,评审

    doi:10.1152/physrev.00002.2002

    authors: Syka J

    更新日期:2002-07-01 00:00:00