Lasso logistic regression to derive workflow-specific algorithm performance requirements as demonstrated for head and neck cancer deformable image registration in adaptive radiation therapy.

Abstract:

:As automation in radiation oncology becomes more common, it is important to determine which algorithms are equivalent for a given workflow. Often, algorithm comparisons are performed in isolation; however, clinical context can provide valuable insight into the importance of algorithm features and error magnification in subsequent workflow steps. We propose a strategy for deriving workflow-specific algorithm performance requirements. We considered two independent workflows indicating the need for radiotherapy treatment replanning for 15 head and neck cancer patients (15 planning CTs, 105 on-unit CBCTs). Each workflow was based on a different deformable image registration (DIR) algorithm. Differences in DIR output were assessed using three sets of QA metrics: (1) conventional, (2) workflow-specific, (3) a combination of (1) and (2). For a given set of algorithm metrics, lasso logistic regression modeled the probability of discrepant replan indications. Varying the minimum probability needed to predict a workflow discrepancy produced receiver operating characteristic (ROC) curves. ROC curves were compared using sensitivity, specificity, and the area under the curve (AUC). A heuristic then derived simple algorithm performance requirements. Including workflow-specific QA metrics improved AUC from 0.70 to 0.85, compared to the use of conventional metrics alone. Algorithm performance requirements had high sensitivity of 0.80, beneficial for replan assessments, with specificity of 0.57. This was an improvement over a naïve application of conventional QA criteria, which had sensitivity of 0.57 and specificity of 0.68. In addition, the algorithm performance requirements indicated practical refinements of conventional QA tolerances, indicated where auxiliary workflow processes should be standardized, and may be used to prioritize structures for manual review. Our algorithm performance requirements outperformed current comparison recommendations and provided practical means for ensuring workflow equivalence. This strategy may aid in trial credentialing, algorithm development, and streamlining expert adjustment of workflow output.

journal_name

Phys Med Biol

authors

Weppler S,Schinkel C,Kirkby C,Smith W

doi

10.1088/1361-6560/ab9fc8

subject

Has Abstract

pub_date

2020-09-28 00:00:00

pages

195013

issue

19

eissn

0031-9155

issn

1361-6560

journal_volume

65

pub_type

杂志文章
  • A neutron source with an effective energy of 0-5 keV.

    abstract::Calculations indicate that an assembly consisting of an antimony-beryllium source at the centre of a 4 cm radius water sphere surrounded by a 1 mm thick shell of boron-10 will emit neutrons with a broad spectrum at intermediate energies. A device based on this design was constructed using a water-filled, boron-carbide...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/21/1/007

    authors: Harvey JR,Bending RC

    更新日期:1976-01-01 00:00:00

  • Prediction of lung tumor motion using nonlinear autoregressive model with exogenous input.

    abstract::The present note addresses the development of a lung tumor position predictor to be used in dynamic tumor tracking radiotherapy, abbreviated as DTT-RT. As there exists 50-500 ms positioning lag in the control of the multi-leaf collimator (MLC) of commercial medical linear accelerators, prediction of future lung tumor ...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/ab49ea

    authors: Jiang K,Fujii F,Shiinoki T

    更新日期:2019-10-31 00:00:00

  • Dead time correction and counting statistics for positron tomography.

    abstract::A correction for loss of events due to dead time in dynamic positron emission tomography (PET) is presented. The model employs a paralysing dead time to describe the behaviour of a tomograph over the range of event rates normally encountered in patient studies (up to 200 000 events/s per detector layer). The Donner 28...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/30/5/002

    authors: Mazoyer BM,Roos MS,Huesman RH

    更新日期:1985-05-01 00:00:00

  • An in silico framework to analyze the anisotropic shear wave mechanics in cardiac shear wave elastography.

    abstract::Shear wave elastography (SWE) is a potential tool to non-invasively assess cardiac muscle stiffness. This study focused on the effect of the orthotropic material properties and mechanical loading on the performance of cardiac SWE, as it is known that these factors contribute to complex 3D anisotropic shear wave propag...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/aaaffe

    authors: Caenen A,Pernot M,Peirlinck M,Mertens L,Swillens A,Segers P

    更新日期:2018-03-23 00:00:00

  • Numerical model of heat transfer in the human eye with consideration of fluid dynamics of the aqueous humour.

    abstract::In this work we present a new 3D numerical model for heat transfer in the human eye, which takes into account the aqueous humour flow in the anterior chamber. We show that consideration of this phenomenon in the calculations alters the temperature distribution on the corneal and lens surfaces, without, however, notice...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/55/19/003

    authors: Karampatzakis A,Samaras T

    更新日期:2010-10-07 00:00:00

  • Optical-thermal characterization of cutaneous transilluminators.

    abstract::In recent years, there has been an increase in the popularity of light-emitting diode (LED)-based, battery-powered transilluminators (BPTs) for facilitating transdermal vascular access in adults and neonates. BPTs are believed to have lower potential for inducing skin burns than prior devices based on high-power broad...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/54/22/008

    authors: Pfefer TJ,Mehrabi A,James R,Landry R,Weininger S,Chang I,Kaufman D,Miller S

    更新日期:2009-11-21 00:00:00

  • Simulation of voltage-sensitive optical signals in three-dimensional slabs of cardiac tissue: application to transillumination and coaxial imaging methods.

    abstract::Voltage-sensitive dyes are an important tool in visualizing electrical activity in cardiac tissue. Until today, they have mainly been applied in cardiac electrophysiology to subsurface imaging. In the present study, we assess different imaging methods used in optical tomography with respect to their effectiveness in v...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/50/2/003

    authors: Bernus O,Wellner M,Mironov SF,Pertsov AM

    更新日期:2005-01-21 00:00:00

  • Efficient IMRT inverse planning with a new L1-solver: template for first-order conic solver.

    abstract::Intensity modulated radiation therapy (IMRT) inverse planning using total-variation (TV) regularization has been proposed to reduce the complexity of fluence maps and facilitate dose delivery. Conventionally, the optimization problem with L-1 norm is solved with quadratic programming (QP), which is time consuming and ...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/57/13/4139

    authors: Kim H,Suh TS,Lee R,Xing L,Li R

    更新日期:2012-07-07 00:00:00

  • Simulations of a micro-PET system based on liquid xenon.

    abstract::The imaging performance of a high-resolution preclinical micro-positron emission tomography (micro-PET) system employing liquid xenon (LXe) as the gamma-ray detection medium was simulated. The arrangement comprises a ring of detectors consisting of trapezoidal LXe time projection ionization chambers and two arrays of ...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/57/6/1685

    authors: Miceli A,Glister J,Andreyev A,Bryman D,Kurchaninov L,Lu P,Muennich A,Retiere F,Sossi V

    更新日期:2012-03-21 00:00:00

  • Quantitative evaluation of regularized phase retrieval algorithms on bone scaffolds seeded with bone cells.

    abstract::In the field of regenerative medicine, there has been a growing interest in studying the combination of bone scaffolds and cells that can maximize newly formed bone. In-line phase-contrast x-ray tomography was used to image porous bone scaffolds (Skelite(©)), seeded with bone forming cells. This technique allows the q...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/61/9/N215

    authors: Weber L,Langer M,Tavella S,Ruggiu A,Peyrin F

    更新日期:2016-05-07 00:00:00

  • Dose distribution to spinal structures from intrathecally administered yttrium-90.

    abstract::Previous treatment of cerebrospinal fluid (CSF) malignancies by intrathecal administration of (131)I-radiolabelled monoclonal antibodies has led to the assumption that more healthy tissue will be spared when a pure beta-emitter such as (90)Y replaces (131)I. The purpose of this study is to compare and quantitatively e...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/51/1/014

    authors: Mardirossian G,Hall M,Montebello J,Stevens P

    更新日期:2006-01-07 00:00:00

  • An integrated quality assurance phantom for frameless single-isocenter multitarget stereotactic radiosurgery.

    abstract::Brain stereotactic radiosurgery (SRS) treatments require multiple quality assurance (QA) procedures to ensure accurate and precise treatment delivery. As single-isocenter multitarget SRS treatments become more popular, the quantification of off-axis accuracy of the linear accelerator is crucial. In this study, a novel...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/ab8534

    authors: Capaldi DPI,Skinner LB,Dubrowski P,Yu AS

    更新日期:2020-06-10 00:00:00

  • Improved precision of syndesmophyte measurement for the evaluation of ankylosing spondylitis using CT: a phantom and patient study.

    abstract::Ankylosing spondylitis is a disease characterized by abnormal bone formation (syndesmophyte) at the margins of inter-vertebral disc spaces. Syndesmophyte growth is currently typically monitored by the visual inspection of radiographs. The limitations inherent to the modality (2D projection of a 3D object) and rater (q...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/57/14/4683

    authors: Tan S,Yao J,Yao L,Ward MM

    更新日期:2012-07-21 00:00:00

  • Optimization of fluoroscopy parameters using pattern matching prediction in the real-time tumor-tracking radiotherapy system.

    abstract::In the real-time tumor-tracking radiotherapy system, fluoroscopy is used to determine the real-time position of internal fiducial markers. The pattern recognition score (PRS) ranging from 0 to 100 is computed by a template pattern matching technique in order to determine the marker position on the fluoroscopic image. ...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/56/15/011

    authors: Miyamoto N,Ishikawa M,Bengua G,Sutherland K,Suzuki R,Kimura S,Shimizu S,Onimaru R,Shirato H

    更新日期:2011-08-07 00:00:00

  • Positron range in PET imaging: an alternative approach for assessing and correcting the blurring.

    abstract::Positron range impairs resolution in PET imaging, especially for high-energy emitters and for small-animal PET. De-blurring in image reconstruction is possible if the blurring distribution is known. Furthermore, the percentage of annihilation events within a given distance from the point of positron emission is releva...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/57/12/3931

    authors: Jødal L,Le Loirec C,Champion C

    更新日期:2012-06-21 00:00:00

  • Kill painting of hypoxic tumors with multiple ion beams.

    abstract::We report on a novel method for simultaneous biological optimization of treatment plans for hypoxic tumors using multiple ion species. Our previously introduced kill painting approach, where the overall cell killing is optimized on biologically heterogeneous targets, was expanded with the capability of handling differ...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/aafe40

    authors: Sokol O,Krämer M,Hild S,Durante M,Scifoni E

    更新日期:2019-02-08 00:00:00

  • Novel adaptive beam-dependent margins for additional OAR sparing.

    abstract::Margins are employed in radiotherapy treatment planning to mitigate the dosimetric effects of geometric uncertainties for the clinical target volume (CTV). Unfortunately, whilst the use of margins can increase the probability that sufficient dose is delivered to the CTV, it can also result in delivering high dose of r...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/aae658

    authors: Tsang HS,Kamerling CP,Ziegenhein P,Nill S,Oelfke U

    更新日期:2018-10-29 00:00:00

  • Automatic extraction of pectoral muscle in the MLO view of mammograms.

    abstract::A mammogram is the standard modality used for breast cancer screening. Computer-aided detection (CAD) approaches are helpful for improving breast cancer detection rates when applied to mammograms. However, automated analysis of a mammogram often leads to inaccurate results in the presence of the pectoral muscle. There...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/58/23/8493

    authors: Feudjio CK,Klein J,Tiedeu A,Colot O

    更新日期:2013-12-07 00:00:00

  • Modulated photon radiotherapy (XMRT): an algorithm for the simultaneous optimization of photon beamlet energy and intensity in external beam radiotherapy (EBRT) planning.

    abstract::This is a proof of principle study on an algorithm for optimizing external beam radiotherapy in terms of both photon beamlet energy and fluence. This simultaneous beamlet energy and fluence optimization is denoted modulated photon radiotherapy (XMRT). XMRT is compared with single-energy intensity modulated radiotherap...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/61/4/1476

    authors: McGeachy P,Villarreal-Barajas JE,Zinchenko Y,Khan R

    更新日期:2016-02-21 00:00:00

  • Experimental characterization of two-dimensional pencil beam scanning proton spot profiles.

    abstract::Dose calculations of pencil beam scanning treatment plans rely on the accuracy of proton spot profiles; not only the primary component but also the broad tail components. Four films are placed at several locations in air and multiple depths in Solidwater® for six selected energies. The films used for the primary compo...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/58/17/6193

    authors: Lin L,Ainsley CG,McDonough JE

    更新日期:2013-09-07 00:00:00

  • Positioning of a plane-parallel ionization chamber in clinical electron beams and the impact on perturbation factors.

    abstract::Current dosimetry protocols recommend the use of plane-parallel ionization chambers for the dosimetry of clinical electron beams. The necessary perturbation corrections p(wall) and p(cav) are assumed to be unity, independent of the depth of measurement and the energy of the primary electrons. To verify these assumptio...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/54/8/011

    authors: Zink K,Wulff J

    更新日期:2009-04-21 00:00:00

  • Real-time prediction and gating of respiratory motion using an extended Kalman filter and Gaussian process regression.

    abstract::Motion-adaptive radiotherapy aims to deliver a conformal dose to the target tumour with minimal normal tissue exposure by compensating for tumour motion in real time. The prediction as well as the gating of respiratory motion have received much attention over the last two decades for reducing the targeting error of th...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/60/1/233

    authors: Bukhari W,Hong SM

    更新日期:2015-01-07 00:00:00

  • Projection-based motion compensation for gated coronary artery reconstruction from rotational x-ray angiograms.

    abstract::Three-dimensional reconstruction of coronary arteries can be performed during x-ray-guided interventions by gated reconstruction from a rotational coronary angiography sequence. Due to imperfect gating and cardiac or breathing motion, the heart's motion state might not be the same in all projections used for the recon...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/53/14/007

    authors: Hansis E,Schäfer D,Dössel O,Grass M

    更新日期:2008-07-21 00:00:00

  • Deep learning-based radiomic features for improving neoadjuvant chemoradiation response prediction in locally advanced rectal cancer.

    abstract::Radiomic features achieve promising results in cancer diagnosis, treatment response prediction, and survival prediction. Our goal is to compare the handcrafted (explicitly designed) and deep learning (DL)-based radiomic features extracted from pre-treatment diffusion-weighted magnetic resonance images (DWIs) for predi...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/ab7970

    authors: Fu J,Zhong X,Li N,Van Dams R,Lewis J,Sung K,Raldow AC,Jin J,Qi XS

    更新日期:2020-04-02 00:00:00

  • Spinal pedicle screw planning using deformable atlas registration.

    abstract::Spinal screw placement is a challenging task due to small bone corridors and high risk of neurological or vascular complications, benefiting from precision guidance/navigation and quality assurance (QA). Implicit to both guidance and QA is the definition of a surgical plan-i.e. the desired trajectories and device sele...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/aa5f42

    authors: Goerres J,Uneri A,De Silva T,Ketcha M,Reaungamornrat S,Jacobson M,Vogt S,Kleinszig G,Osgood G,Wolinsky JP,Siewerdsen JH

    更新日期:2017-04-07 00:00:00

  • A multi-frequency sparse hemispherical ultrasound phased array for microbubble-mediated transcranial therapy and simultaneous cavitation mapping.

    abstract::Focused ultrasound (FUS) phased arrays show promise for non-invasive brain therapy. However, the majority of them are limited to a single transmit/receive frequency and therefore lack the versatility to expose and monitor the treatment volume. Multi-frequency arrays could offer variable transmit focal sizes under a fi...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/61/24/8476

    authors: Deng L,O'Reilly MA,Jones RM,An R,Hynynen K

    更新日期:2016-12-21 00:00:00

  • Diffusion coefficient for photon transport in turbid media.

    abstract::Light propagation in a turbid medium is considered using the linear transport equation. The existence of a diffusion length is proved for the Henyey-Greenstein scattering kernel for all absorption ratios. Numerical methods are given that allow accurate computation of the diffusion coefficient quite easily. ...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/48/23/012

    authors: Sahni DC,Dahl EB,Sjöstrand NG

    更新日期:2003-12-07 00:00:00

  • Analytical linear energy transfer model including secondary particles: calculations along the central axis of the proton pencil beam.

    abstract::In proton therapy, the relative biological effectiveness (RBE) depends on various types of parameters such as linear energy transfer (LET). An analytical model for LET calculation exists (Wilkens' model), but secondary particles are not included in this model. In the present study, we propose a correction factor, L se...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/61/2/740

    authors: Marsolat F,De Marzi L,Pouzoulet F,Mazal A

    更新日期:2016-01-21 00:00:00

  • Microdosimetric investigations on collimated fast neutron beams for radiation therapy: II. The problem of radiation quality and RBE.

    abstract::The correlation between radiation quality and cellular RBE of a mixed n-gamma field produced by a collimated fast-neutron beam produced by the bombardment of 14 MeV deuterons on Be in a water phantom is investigated. The microdosimetric parameters yF and YD are used for a physical description of the local distribution...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/26/1/006

    authors: Booz J,Fidorra J

    更新日期:1981-01-01 00:00:00

  • Resolving fluorophores by unmixing multispectral fluorescence tomography with independent component analysis.

    abstract::It is a challenging problem to resolve and identify drug (or non-specific fluorophore) distribution throughout the whole body of small animals in vivo. In this article, an algorithm of unmixing multispectral fluorescence tomography (MFT) images based on independent component analysis (ICA) is proposed to solve this pr...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/59/17/5025

    authors: Pu H,Zhang G,He W,Liu F,Guang H,Zhang Y,Bai J,Luo J

    更新日期:2014-09-07 00:00:00