Closed-loop and activity-guided optogenetic control.

Abstract:

:Advances in optical manipulation and observation of neural activity have set the stage for widespread implementation of closed-loop and activity-guided optical control of neural circuit dynamics. Closing the loop optogenetically (i.e., basing optogenetic stimulation on simultaneously observed dynamics in a principled way) is a powerful strategy for causal investigation of neural circuitry. In particular, observing and feeding back the effects of circuit interventions on physiologically relevant timescales is valuable for directly testing whether inferred models of dynamics, connectivity, and causation are accurate in vivo. Here we highlight technical and theoretical foundations as well as recent advances and opportunities in this area, and we review in detail the known caveats and limitations of optogenetic experimentation in the context of addressing these challenges with closed-loop optogenetic control in behaving animals.

journal_name

Neuron

journal_title

Neuron

authors

Grosenick L,Marshel JH,Deisseroth K

doi

10.1016/j.neuron.2015.03.034

subject

Has Abstract

pub_date

2015-04-08 00:00:00

pages

106-39

issue

1

eissn

0896-6273

issn

1097-4199

pii

S0896-6273(15)00258-5

journal_volume

86

pub_type

杂志文章,评审

相关文献

NEURON文献大全
  • Suppression of MAP2 in cultured cerebellar macroneurons inhibits minor neurite formation.

    abstract::We show here that antisense MAP2 oligonucleotides inhibit neurite outgrowth in cultured cerebellar macroneurons. Unlike control neurons, which first extend a lamellipodial veil followed by a consolidation phase during which the cells extend minor neurites, MAP2-suppressed cells persist with lamellipodia and later beco...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/0896-6273(92)90025-9

    authors: Caceres A,Mautino J,Kosik KS

    更新日期:1992-10-01 00:00:00

  • Circadian pacemaker neurons transmit and modulate visual information to control a rapid behavioral response.

    abstract::Circadian pacemaker neurons contain a molecular clock that oscillates with a period of approximately 24 hr, controlling circadian rhythms of behavior. Pacemaker neurons respond to visual system inputs for clock resetting, but, unlike other neurons, have not been reported to transmit rapid signals to their targets. Her...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2004.12.038

    authors: Mazzoni EO,Desplan C,Blau J

    更新日期:2005-01-20 00:00:00

  • Molecular Tuning of the Axonal Mitochondrial Ca2+ Uniporter Ensures Metabolic Flexibility of Neurotransmission.

    abstract::The brain is a vulnerable metabolic organ and must adapt to different fuel conditions to sustain function. Nerve terminals are a locus of this vulnerability, but how they regulate ATP synthesis as fuel conditions vary is unknown. We show that synapses can switch from glycolytic to oxidative metabolism, but to do so, t...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2019.11.020

    authors: Ashrafi G,de Juan-Sanz J,Farrell RJ,Ryan TA

    更新日期:2020-02-19 00:00:00

  • Healing Pains of the Past Using Neuronal Transplantation.

    abstract::Yang et al. (2016) show that transplantation of GABAergic inhibitory neurons into the amygdala boosts the persistence of fear extinction in mice. Transplantation was found to degrade perineuronal nets on endogenous inhibitory neurons and enhance synaptic plasticity in host amygdala. ...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2016.12.012

    authors: Zheng X,Gandhi SP

    更新日期:2016-12-21 00:00:00

  • Behavioral flexibility and the frontal lobe.

    abstract::Brain areas in the frontal lobe have been implicated in behavioral flexibility and control. The study by Johnston et al. in this issue of Neuron provides novel insights into the roles of the prefrontal and anterior cingulate cortices in controlling behavior. ...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2007.01.015

    authors: Rainer G

    更新日期:2007-02-01 00:00:00

  • Serotonin-induced regulation of the actin network for learning-related synaptic growth requires Cdc42, N-WASP, and PAK in Aplysia sensory neurons.

    abstract::Application of Clostridium difficile toxin B, an inhibitor of the Rho family of GTPases, at the Aplysia sensory to motor neuron synapse blocks long-term facilitation and the associated growth of new sensory neuron varicosities induced by repeated pulses of serotonin (5-HT). We have isolated cDNAs encoding Aplysia Rho,...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2005.01.044

    authors: Udo H,Jin I,Kim JH,Li HL,Youn T,Hawkins RD,Kandel ER,Bailey CH

    更新日期:2005-03-24 00:00:00

  • Early motor neuron pool identity and muscle nerve trajectory defined by postmitotic restrictions in Nkx6.1 activity.

    abstract::The fidelity with which spinal motor neurons innervate their limb target muscles helps to coordinate motor behavior, but the mechanisms that determine precise patterns of nerve-muscle connectivity remain obscure. We show that Nkx6 proteins, a set of Hox-regulated homeodomain transcription factors, are expressed by mot...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2007.11.033

    authors: De Marco Garcia NV,Jessell TM

    更新日期:2008-01-24 00:00:00

  • Subunit stoichiometry of a mammalian K+ channel determined by construction of multimeric cDNAs.

    abstract::The subunit stoichiometry of the mammalian K+ channel KV1.1 (RCK1) was examined by linking together the coding sequences of 2-5 K+ channel subunits in a single open reading frame and tagging the expression of individual subunits with a mutation (Y379K or Y379R) that altered the sensitivity of the channel to block by e...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/0896-6273(92)90239-a

    authors: Liman ER,Tytgat J,Hess P

    更新日期:1992-11-01 00:00:00

  • Ion channels: from conductance to structure.

    abstract::In this perspective I tell the story (albeit a clearly abridged version) of how our knowledge of ion conduction through ion channels has evolved from a purely electrical concept to a structural dynamics view of ions interacting with a membrane protein. Our progress in this field has shown steady growth over the years ...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2008.10.035

    authors: Bezanilla F

    更新日期:2008-11-06 00:00:00

  • Dopaminergic and Prefrontal Basis of Learning from Sensory Confidence and Reward Value.

    abstract::Deciding between stimuli requires combining their learned value with one's sensory confidence. We trained mice in a visual task that probes this combination. Mouse choices reflected not only present confidence and past rewards but also past confidence. Their behavior conformed to a model that combines signal detection...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2019.11.018

    authors: Lak A,Okun M,Moss MM,Gurnani H,Farrell K,Wells MJ,Reddy CB,Kepecs A,Harris KD,Carandini M

    更新日期:2020-02-19 00:00:00

  • Conversion of Graded Presynaptic Climbing Fiber Activity into Graded Postsynaptic Ca2+ Signals by Purkinje Cell Dendrites.

    abstract::The brain must make sense of external stimuli to generate relevant behavior. We used a combination of in vivo approaches to investigate how the cerebellum processes sensory-related information. We found that the inferior olive encodes contexts of sensory-associated external cues in a graded manner, apparent in the pre...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2019.03.010

    authors: Gaffield MA,Bonnan A,Christie JM

    更新日期:2019-05-22 00:00:00

  • Reduction of information redundancy in the ascending auditory pathway.

    abstract::Information processing by a sensory system is reflected in the changes in stimulus representation along its successive processing stages. We measured information content and stimulus-induced redundancy in the neural responses to a set of natural sounds in three successive stations of the auditory pathway-inferior coll...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2006.06.030

    authors: Chechik G,Anderson MJ,Bar-Yosef O,Young ED,Tishby N,Nelken I

    更新日期:2006-08-03 00:00:00

  • Initiation and spread of sodium action potentials in cerebellar Purkinje cells.

    abstract::Simultaneous whole-cell recordings were made from the soma and dendrites of cerebellar Purkinje cells in rat brain slices. Sodium action potentials, evoked by either depolarizing current pulses or synaptic stimulation of parallel or climbing fibers, always occurred first at the soma and decreased in amplitude with inc...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/0896-6273(94)90037-x

    authors: Stuart G,Häusser M

    更新日期:1994-09-01 00:00:00

  • Epitranscriptomes in the Adult Mammalian Brain: Dynamic Changes Regulate Behavior.

    abstract::Epitranscriptomic modification of mRNA affects its metabolism and has recently been shown to regulate brain development. Two studies in this issue of Neuron, Koranda et al. (2018) and Engel et al. (2018), uncover dynamic and critical roles of m6A/m RNA modifications in the adult mammalian brain in regulating physiolog...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2018.07.019

    authors: Yoon KJ,Ming GL,Song H

    更新日期:2018-07-25 00:00:00

  • NMD Takes the Immune Road to NDD.

    abstract::Proper mRNA quality control prevents immune activation; when it goes awry, mice and flies develop abnormal behavioral phenotypes. In this issue of Neuron, Johnson et al. (2019) report that inhibiting nonsense-mediated mRNA decay (NMD) contributes to the pathogenesis of neurodevelopmental disorder (NDD) phenotypes by t...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2019.10.042

    authors: Kim E,Huh JR

    更新日期:2019-11-20 00:00:00

  • For love or money: a common neural currency for social and monetary reward.

    abstract::Two papers in the current issue of Neuron (Izuma et al. and Zink et al.) report that activity in specific regions of the brain, especially the striatum, reflects a common signal of reward in both the economic (e.g., money) and social (e.g., praise and status) domains. ...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2008.04.005

    authors: Saxe R,Haushofer J

    更新日期:2008-04-24 00:00:00

  • Intrinsic Variable Learning for Brain-Machine Interface Control by Human Anterior Intraparietal Cortex.

    abstract::Although animal studies provided significant insights in understanding the neural basis of learning and adaptation, they often cannot dissociate between different learning mechanisms due to the lack of verbal communication. To overcome this limitation, we examined the mechanisms of learning and its limits in a human i...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2019.02.012

    authors: Sakellaridi S,Christopoulos VN,Aflalo T,Pejsa KW,Rosario ER,Ouellette D,Pouratian N,Andersen RA

    更新日期:2019-05-08 00:00:00

  • Two-back makes step forward in brain imaging genomics.

    abstract::The combination of brain imaging and genetics promises to identify neural mechanisms underlying complex traits such as cognition and psychiatric disorder. The study by Heck et al. (2014) in this issue of Neuron highlights voltage-gated cation channel activity as a likely link and culprit. ...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2014.02.023

    authors: McIntosh A,Deary I,Porteous DJ

    更新日期:2014-03-05 00:00:00

  • Sequential Nonlinear Filtering of Local Motion Cues by Global Motion Circuits.

    abstract::Many animals guide their movements using optic flow, the displacement of stationary objects across the retina caused by self-motion. How do animals selectively synthesize a global motion pattern from its local motion components? To what extent does this feature selectivity rely on circuit mechanisms versus dendritic p...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2018.08.022

    authors: Barnhart EL,Wang IE,Wei H,Desplan C,Clandinin TR

    更新日期:2018-10-10 00:00:00

  • Low mobility of the Ca2+ buffers in axons of cultured Aplysia neurons.

    abstract::Cellular Ca2+ buffers determine amplitude and diffusional spread of neuronal Ca2+ signals. Fixed Ca2+ buffers tend to retard the signal and to lower the apparent diffusion coefficient (D(app)) of Ca2+, whereas mobile buffers contribute to Ca2+ redistribution. To estimate the impact of the expression of specific Ca2+-b...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/s0896-6273(00)81247-7

    authors: Gabso M,Neher E,Spira ME

    更新日期:1997-03-01 00:00:00

  • The force be with you: a mechanoreceptor channel in proprioception and touch.

    abstract::The TRPN1 ion channel has a role in both hearing and bristle mechanosensation in fruit flies and in proprioception in nematodes. In this issue of Neuron, two papers present evidence that TRPN1 is also required for proprioception in fruit fly larvae and that it is a bona fide mechanoreceptor channel for nematode feedin...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2010.07.022

    authors: Wilson RI,Corey DP

    更新日期:2010-08-12 00:00:00

  • Pain-Induced Negative Affect Is Mediated via Recruitment of The Nucleus Accumbens Kappa Opioid System.

    abstract::Negative affective states affect quality of life for patients suffering from pain. These maladaptive emotional states can lead to involuntary opioid overdose and many neuropsychiatric comorbidities. Uncovering the mechanisms responsible for pain-induced negative affect is critical in addressing these comorbid outcomes...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2019.02.029

    authors: Massaly N,Copits BA,Wilson-Poe AR,Hipólito L,Markovic T,Yoon HJ,Liu S,Walicki MC,Bhatti DL,Sirohi S,Klaas A,Walker BM,Neve R,Cahill CM,Shoghi KI,Gereau RW 4th,McCall JG,Al-Hasani R,Bruchas MR,Morón JA

    更新日期:2019-05-08 00:00:00

  • Activating Injury-Responsive Genes with Hypoxia Enhances Axon Regeneration through Neuronal HIF-1α.

    abstract::Injured peripheral neurons successfully activate a proregenerative transcriptional program to enable axon regeneration and functional recovery. How transcriptional regulators coordinate the expression of such program remains unclear. Here we show that hypoxia-inducible factor 1α (HIF-1α) controls multiple injury-induc...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2015.09.050

    authors: Cho Y,Shin JE,Ewan EE,Oh YM,Pita-Thomas W,Cavalli V

    更新日期:2015-11-18 00:00:00

  • A Cacna1a knockin migraine mouse model with increased susceptibility to cortical spreading depression.

    abstract::Migraine is a common, disabling, multifactorial, episodic neurovascular disorder of unknown etiology. Familial hemiplegic migraine type 1 (FHM-1) is a Mendelian subtype of migraine with aura that is caused by missense mutations in the CACNA1A gene that encodes the alpha(1) subunit of neuronal Ca(v)2.1 Ca(2+) channels....

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/s0896-6273(04)00085-6

    authors: van den Maagdenberg AM,Pietrobon D,Pizzorusso T,Kaja S,Broos LA,Cesetti T,van de Ven RC,Tottene A,van der Kaa J,Plomp JJ,Frants RR,Ferrari MD

    更新日期:2004-03-04 00:00:00

  • Polarity Acquisition in Cortical Neurons Is Driven by Synergistic Action of Sox9-Regulated Wwp1 and Wwp2 E3 Ubiquitin Ligases and Intronic miR-140.

    abstract::The establishment of axon-dendrite polarity is fundamental for radial migration of neurons during cortex development of mammals. We demonstrate that the E3 ubiquitin ligases WW-Containing Proteins 1 and 2 (Wwp1 and Wwp2) are indispensable for proper polarization of developing neurons. We show that knockout of Wwp1 and...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2018.10.008

    authors: Ambrozkiewicz MC,Schwark M,Kishimoto-Suga M,Borisova E,Hori K,Salazar-Lázaro A,Rusanova A,Altas B,Piepkorn L,Bessa P,Schaub T,Zhang X,Rabe T,Ripamonti S,Rosário M,Akiyama H,Jahn O,Kobayashi T,Hoshino M,Tarabykin V,

    更新日期:2018-12-05 00:00:00

  • Differential spatial and temporal expression of two type III intermediate filament proteins in olfactory receptor neurons.

    abstract::Olfactory receptor neurons (ORNs) do not express the typical neuronal intermediate filament proteins (IFPs), the neurofilament triplet proteins. Immunocytochemical evidence shows that ORNs coexpress vimentin and peripherin but distribute them differently. Specifically, ORNs contain vimentin in dendrites, cell bodies, ...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/0896-6273(91)90300-o

    authors: Gorham JD,Ziff EB,Baker H

    更新日期:1991-09-01 00:00:00

  • Genome-wide analysis of chromatin regulation by cocaine reveals a role for sirtuins.

    abstract::Changes in gene expression contribute to the long-lasting regulation of the brain's reward circuitry seen in drug addiction; however, the specific genes regulated and the transcriptional mechanisms underlying such regulation remain poorly understood. Here, we used chromatin immunoprecipitation coupled with promoter mi...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2009.03.026

    authors: Renthal W,Kumar A,Xiao G,Wilkinson M,Covington HE 3rd,Maze I,Sikder D,Robison AJ,LaPlant Q,Dietz DM,Russo SJ,Vialou V,Chakravarty S,Kodadek TJ,Stack A,Kabbaj M,Nestler EJ

    更新日期:2009-05-14 00:00:00

  • Currently Unstable: Daily Ups and Downs in E-I Balance.

    abstract::Balance between excitation and inhibition (E-I balance) in neural circuits is believed to be tightly regulated. To the contrary, in this issue of Neuron, Bridi et al. (2020) reveal that inverse oscillations of synaptic inhibition and excitation lead to peaks and valleys in E-I balance across the 24 h day. ...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2020.01.035

    authors: Brunwasser SJ,Hengen KB

    更新日期:2020-02-19 00:00:00

  • Individual Variation in Functional Topography of Association Networks in Youth.

    abstract::The spatial distribution of large-scale functional networks on the cerebral cortex differs between individuals and is particularly variable in association networks that are responsible for higher-order cognition. However, it remains unknown how this functional topography evolves in development and supports cognition. ...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2020.01.029

    authors: Cui Z,Li H,Xia CH,Larsen B,Adebimpe A,Baum GL,Cieslak M,Gur RE,Gur RC,Moore TM,Oathes DJ,Alexander-Bloch AF,Raznahan A,Roalf DR,Shinohara RT,Wolf DH,Davatzikos C,Bassett DS,Fair DA,Fan Y,Satterthwaite TD

    更新日期:2020-04-22 00:00:00

  • Phosphoinositide lipid second messengers: new paradigms for calcium channel modulation.

    abstract::Neuronal Ca2+ channels are key transducers coupling excitability to cellular function. As such, they are tightly regulated by multiple G protein-signaling pathways that finely tune their activity. In addition to fast, direct G(beta)gamma modulation of Ca2+ channels, a slower Galpha(q/11)-mediated mechanism has remaine...

    journal_title:Neuron

    pub_type: 杂志文章,评审

    doi:10.1016/j.neuron.2005.07.001

    authors: Delmas P,Coste B,Gamper N,Shapiro MS

    更新日期:2005-07-21 00:00:00