Comparative transcriptomic analysis between 'Summer Black' and its bud sport 'Nantaihutezao' during developmental stages.

Abstract:

MAIN CONCLUSION:4-coumarate-CoA ligase (VIT_02s0109g00250) and copper amine oxidase (VIT_17s0000g09100) played essential roles in contributing to the total soluble solid and total anthocyanin variations induced by bud sport in grape berries. Taste and color, which are important organoleptic qualities of grape berry, undergo rapid and substantial changes during development and ripening. In this study, we used two cultivars 'Summer Black' and its bud sport 'Nantaihutezao' to explore and identify differentially expressed genes associated with total soluble solid and anthocyanin during developmental stages using RNA-Seq. Overall, substantial differences in expression were observed across berry development between the two cultivars. 5388 genes were detected by weighted gene co-expression network analysis (WGCNA) associated with the total soluble solid (TSS) and anthocyanin contents variations. Several of these genes were significantly enriched in the phenylalanine metabolism pathway; two hub genes 4-coumarate-CoA ligase (VIT_02s0109g00250) and copper amine oxidase (VIT_17s0000g09100) played the most essential roles in relating to the total soluble solid and total anthocyanin variations induced by bud sport through Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment and co-expression network analysis. These findings provide insights into the molecular mechanism responsible for the bud sport phenotype.

journal_name

Planta

journal_title

Planta

authors

Leng F,Ye Y,Zhu X,Zhang Y,Zhang Z,Shi J,Shen N,Jia H,Wang L

doi

10.1007/s00425-020-03543-7

subject

Has Abstract

pub_date

2021-01-05 00:00:00

pages

23

issue

1

eissn

0032-0935

issn

1432-2048

pii

10.1007/s00425-020-03543-7

journal_volume

253

pub_type

杂志文章

相关文献

PLANTA文献大全
  • Auxin level and regeneration of Begonia leaves.

    abstract::As previously found, both the level of ether-extractable auxin (presumably indole-3-acetic acid) and the root-forming ability of B.xcheimantha leaves are increased under long-day conditions by high temperature, whereas the capacity for adventitious bud formation is reduced. However, this relation is present under rela...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00417444

    authors: Heide OM

    更新日期:1968-06-01 00:00:00

  • Actin-related defense mechanism to reject penetration attempt by a non-pathogen is maintained in tobacco BY-2 cells.

    abstract::The actin cytoskeleton is a key player in defense responses during early stages of infection by fungal pathogens. To investigate molecular mechanisms of actin-related defense responses, a cultured tobacco ( Nicotiana tabacum L.) BY-2 cell system was devised. When conidia were directly deposited on BY-2 cells, neither ...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-003-1042-3

    authors: Kobayashi I,Hakuno H

    更新日期:2003-06-01 00:00:00

  • Two isoforms of Rubisco activase in cotton, the products of separate genes not alternative splicing.

    abstract::In several plant species, ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) activase consists of two isoforms that are produced by alternative splicing of a pre-mRNA. Two forms of activase corresponding to the longer, redox-regulated alpha and the shorter, beta forms were detected immunologically in cotton (Go...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-002-0923-1

    authors: Salvucci ME,van de Loo FJ,Stecher D

    更新日期:2003-03-01 00:00:00

  • Towards understanding peroxisomal phosphoregulation in Arabidopsis thaliana.

    abstract:MAIN CONCLUSION:This work identifies new protein phosphatases and phosphatase-related proteins targeting peroxisomes, and raises the question of a novel protein import pathway from ER to peroxisomes involving peroxisomal targeting signal type 1 (PTS1) Plant peroxisomes are essential for several processes, for example l...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-015-2439-5

    authors: Kataya AR,Schei E,Lillo C

    更新日期:2016-03-01 00:00:00

  • Inhibition of lycopene cyclase results in accumulation of chlorophyll precursors.

    abstract::Free porphyrins and their magnesium complexes, including chlorophylls, are potent photo-sensitizers. Plants usually accumulate these compounds bound to proteins together with protective compounds like carotenoids. Besides their protective role, carotenoids can play a structural role in these complexes. To analyze the ...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-006-0409-7

    authors: La Rocca N,Rascio N,Oster U,Rüdiger W

    更新日期:2007-03-01 00:00:00

  • Preferential synthesis of plastid DNA and increased replication of plastids in cultured tobacco cells following medium renewal.

    abstract::During the culture of tobacco BY 2 cells derived from Nicotiana tabacum L. cv. Bright Yellow 2, morphological changes of plastid (pt) nucleoids and their replication were examined by fluorescence microscopy after staining with 4'6-diamidino-2-phenylindole. Upon transfer to fresh medium, the fluorescence intensity orig...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00394776

    authors: Yasuda T,Kuroiwa T,Nagata T

    更新日期:1988-05-01 00:00:00

  • Systematic identification and characterization of circular RNAs involved in flag leaf senescence of rice.

    abstract:MAIN CONCLUSION:Circular RNAs (circRNAs) identification, expression profiles, and construction of circRNA-parental gene relationships and circRNA-miRNA-mRNA ceRNA networks indicate that circRNAs are involved in flag leaf senescence of rice. Circular RNAs (circRNAs) are a class of 3'-5' head-to-tail covalently closed no...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-020-03544-6

    authors: Huang X,Zhang H,Guo R,Wang Q,Liu X,Kuang W,Song H,Liao J,Huang Y,Wang Z

    更新日期:2021-01-07 00:00:00

  • Electron-microscopic cytochemical localization of diamine and polyamine oxidases in pea and maize tissues.

    abstract::An electron-microscopic cytochemical method was used to localize diamine oxidase (DAO) in pea and polyamine oxidase (PAO) in maize (Zea mays L.). The method, based on the precipitation of amine-oxidase-generated H2O2 by CeCl3, was shown to be specific for DAO and PAO and permitted their localization in plant tissues ...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00197744

    authors: Slocum RD,Furey MJ 3rd

    更新日期:1991-02-01 00:00:00

  • Role of cytokinin in the regulation of root gravitropism.

    abstract::The models explaining root gravitropism propose that the growth response of plants to gravity is regulated by asymmetric distribution of auxin (indole-3-acetic acid, IAA). Since cytokinin has a negative regulatory role in root growth, we suspected that it might function as an inhibitor of tropic root elongation during...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-004-1381-8

    authors: Aloni R,Langhans M,Aloni E,Ullrich CI

    更新日期:2004-11-01 00:00:00

  • Potassium transport in Chlamydomonas reinhardtii: isolation and characterization of transport-deficient mutant strains.

    abstract::Putative potassium-transport-deficient mutant strains of Chlamydomonas reinhardtii Dang. were induced by ultra-violet mutagenesis and were identified by their dependence on abnormally high concentrations of potassium for growth. Potassium transport studies employing (86)Rb as a tracer were carried out with wild-type c...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00393508

    authors: Polley LD,Doctor DD

    更新日期:1985-02-01 00:00:00

  • The lateral transport of IAA in intact coleoptiles of Avena sativa L. and Zea mays L. during geotropic stimulation.

    abstract::Movement of IAA was studied in excised coleoptile apices and whole seedlings of Zea mays L. and Avena sativa L. during geotropic stimulation. A micropipette technique permitted the application of [5-(3)H]IAA at predetermined points on the coleoptiles with minimal tissue damage.When [5-(3)H]IAA was applied to the upper...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00387776

    authors: Shaw S,Gardner G,Wilkins MB

    更新日期:1973-06-01 00:00:00

  • Specific phosphoproteins in the initial period of tobacco pollen embryogenesis.

    abstract::Several phosphoproteins specifically correlated with the induction of embryogenic cells were detected in immature pollen grains of Nicotiana tabacum L. By regulating the concentration of glutamine in the medium the developmental pathways of immature pollen grains isolated at the mid-bicellular stage could be controlle...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00239984

    authors: Kyo M,Harada H

    更新日期:1990-08-01 00:00:00

  • The effect of the endosperm on the formation of gibberellin by barley embryos.

    abstract::It has been shown that the scuttellum of germinating barley embryos synthesises gibberellin in intact grains or when detached from the endosperm, but not when attached to the endosperm if the axis is removed. Evidence is given to support the hypothesis that the inhibition of gibberellin synthesis is caused by a distur...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00386454

    authors: Radley M

    更新日期:1969-09-01 00:00:00

  • [The role of phosphorylase in starch metabolism in plastids].

    abstract::Two phosphorylases could be detected on gel-electropherograms of leaf-extracts of Spinacia oleracea and of immature cotyledons of Vicia faba. These two phosphorylases could be separated by means of ammonium sulfate fractionation. Both the slower migrating phosphorylases from spinach and from beans, but not the fast on...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00396028

    authors: de Fekete MA

    更新日期:1968-09-01 00:00:00

  • Biosynthesis of 12α-and 13-hydroxylated gibberellins in a cell-free system from Cucurbita maxima endosperm and the identification of new endogenous gibberellins.

    abstract::Gibberellin (GA) biosynthesis in cell-free systems from Cucurbita maxima L. endosperm was reinvestigated using incubation conditions different from those employed in previous work. The metabolism of GA12 yielded GA13, GA43 and 12α-hydroxyGA43 as major products, GA4, GA37, GA39, GA46 and four unidentified compounds as ...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00194430

    authors: Lange T,Hedden P,Graebe JE

    更新日期:1993-03-01 00:00:00

  • Hormone treatment of roots causes not only a reversible loss of starch but also of structural polarity in statocytes.

    abstract::Treatment of cress (Lepidium sativum L.) roots with phytohormones (4.3 x 10(-5) M gibberellic acid plus 4.3 x 10(-5) M kinetin, 30 h; T.H. Iversen, 1969, Physiol. Plant. 22, 1251-1262) caused not only complete destarching of amyloplasts but also destruction of the polar arrangement of cell organelles in statocytes. Th...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00195888

    authors: Busch MB,Sievers A

    更新日期:1990-06-01 00:00:00

  • A time-course comparative microarray analysis of an incompatible and compatible response by Glycine max (soybean) to Heterodera glycines (soybean cyst nematode) infection.

    abstract::The development of an infection in soybean [Glycine max L. cultivar (cv.) Peking] roots by incompatible (I) and compatible (C) populations of soybean cyst nematode (SCN) (Heterodera glycines) was assayed using an AffymetriX soybean GeneChip. This time-course microarray analysis, using 37,744 probe sets, measured trans...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-007-0581-4

    authors: Klink VP,Overall CC,Alkharouf NW,MacDonald MH,Matthews BF

    更新日期:2007-11-01 00:00:00

  • The Rhodococcus fascians-plant interaction: morphological traits and biotechnological applications.

    abstract::Rhodococcus fascians is a Gram-positive bacterium that infects dicotyledonous and monocotyledonous plants, leading to an alteration in the normal growth process of the host. The disease results from the modulation of the plant hormone balances, and cytokinins are thought to play an important role in the induction of s...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/PL00008131

    authors: Vereecke D,Burssens S,Simón-Mateo C,Inzé D,Van Montagu M,Goethals K,Jaziri M

    更新日期:2000-01-01 00:00:00

  • Molecular, functional and ultrastructural characterisation of plastids from six species of the parasitic flowering plant genus Cuscuta.

    abstract::Plastids of Cuscuta reflexa Roxb., C. subinclusa D. et H., C. gronovii Willd. and C. campestris Yunck. possess thylakoids and contain both chlorophyll a and b in a ratio similar to that of stem tissue of the systematically closely related but 'normal' green Ipomoea tricolor. In contrast, plastids of C. odorata R. et P...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s004250050670

    authors: van der Kooij TA,Krause K,Dörr I,Krupinska K

    更新日期:2000-04-01 00:00:00

  • Site-specific phosphorylation of L-form starch phosphorylase by the protein kinase activity from sweet potato roots.

    abstract::A 78-amino acid insertion (L78) is found in the low-affinity type (L-form) of starch phosphorylase (L-SP, EC 2.4.1.1). This insertion blocks the starch-binding site on the L-SP molecule, and it decreases the binding affinity of L-SP toward starch. The computational analysis of the amino acid sequence on L78 predicts s...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-005-0103-1

    authors: Young GH,Chen HM,Lin CT,Tseng KC,Wu JS,Juang RH

    更新日期:2006-02-01 00:00:00

  • Differential expression of two β-amylase genes (Bmy1 and Bmy2) in developing and mature barley grain.

    abstract::Two barley (Hordeum vulgare L.) β-amylase genes (Bmy1 and Bmy2) were studied during the late maturation phase of grain development in four genotypes. The Bmy1 and Bmy2 DNA and amino acid sequences are extremely similar. The largest sequence differences are in the introns, seventh exon, and 3' UTR. Accumulation of Bmy2...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-011-1348-5

    authors: Vinje MA,Willis DK,Duke SH,Henson CA

    更新日期:2011-05-01 00:00:00

  • Localization of a protein, immunologically similar to a sucrose-binding protein from developing soybean cotyledons, on the plasma membrane of sieve-tube members of spinach leaves.

    abstract::Immunocytochemical studies using antibodies raised against a 62-kDa membrane protein isolated from developing soybean (Glycine max (L.) Merr.) cotyledons were performed on leaf tissue of spinach (Spinacia oleracea L.). This 62-kDa protein was labeled by 6'-deoxy-6'-(4-azido-2-hydroxy)-benzamidosucrose (HABS), a photoa...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF02411416

    authors: Warmbrodt RD,Buckhout TJ,Hitz WD

    更新日期:1989-12-01 00:00:00

  • Effects of inorganic nitrogen on C2H 2 reduction and CO 2 exchange in the Peltigera praetextata-Nostoc and Peltigera aphthosa-Coccomyxa-Nostoc symbioses.

    abstract::Uptake of NH 4 (+) and NO 3 (-) by the N2-fixing lichens Peltigera praetextata (two-component lichen) and P. aphthosa (three-component lichen) was studied. In addition, the effects of these ions, separately and in combination, on C2H2 reduction and CO2 exchange were examined. Both NH 4 (+) and NO 3 (-) were utilized b...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00397201

    authors: Hällbom L,Bergman B

    更新日期:1983-04-01 00:00:00

  • Purification and properties of an endo-beta-1,4-glucanase from strawberry and down-regulation of the corresponding gene, cel1.

    abstract::An endo-beta-1,4-glucanase (EG) was purified from ripe strawberry (Fragaria x ananassa Duch.) fruit using cellulose affinity chromatography. The purified enzyme gave a single protein band of 54 kDa on sodium dodecyl sulphate-polyacrylamide gel electrophoresis. The N-terminal amino acid sequence of this protein showed ...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s004250100577

    authors: Woolley LC,James DJ,Manning K

    更新日期:2001-11-01 00:00:00

  • Expression and localization of AtAGP18, a lysine-rich arabinogalactan-protein in Arabidopsis.

    abstract::Arabinogalactan-proteins (AGPs) are present on the surface of all plant cells. AtAGP17, 18 and 19 comprise the lysine-rich AGP subfamily in Arabidopsis and consist of an N-terminal signal peptide, a classical AGP domain interrupted by a small Lys-rich region and a C-terminal glycosylphosphatidylinositol (GPI) anchor a...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-007-0478-2

    authors: Yang J,Showalter AM

    更新日期:2007-06-01 00:00:00

  • Isolation and quantitation of isopentenyladenosine in an anise cell culture by single-ion monitoring, radioimmunoassay and bioassay.

    abstract::Using three different techniques, isopentenyladenosine was identified and quantitated in an anise cell line (Pimpinella anisum L.), growing on a medium without cytokinin. A method to quantitate cytokinins was developed which utilizes extraction of cytokinins in the presence of a deuterated reference compound and subse...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00397527

    authors: Ernst D,Schäfer W,Oesterhelt D

    更新日期:1983-11-01 00:00:00

  • Isolation of a cDNA clone for a cytokinin-repressed gene in excised cucumber cotyledons.

    abstract::Rapid changes in gene expression were studied during incubation of cucumber (Cucumis sativus L.) cotyledons with cytokinins in darkness. Complementary-DNA clones for mRNAs whose levels decreased within 4 h of treatment with N6-benzyladenine (BA) were isolated by differential hybridization. One of them (CR9) was sequen...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF02411564

    authors: Teramoto H,Momotani E,Takeba G,Tsuji H

    更新日期:1994-01-01 00:00:00

  • Relationship between leaf development, carboxylase enzyme activities and photorespiration in the C4-plant Portulaca oleracea L.

    abstract::Ribulose diphosphate (RuDP) and (PEP) phosphoenolpyruvate carboxylase enzyme activities were studied in young, mature, and senescent Portulaca oleracea leaves. While the absolute amount of both the C3 (RuDP) and C4 (PEP) carboxylase is less in senescent leaves than in mature leaves, RuDP carboxylase activity is reduce...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/BF00390316

    authors: Kennedy RA

    更新日期:1976-01-01 00:00:00

  • Protein phosphatase activity and sucrose-mediated induction of fructan synthesis in wheat.

    abstract::In this work, we analyze protein phosphatase (PP) involvement in the sucrose-mediated induction of fructan metabolism in wheat (Triticum aestivum). The addition of okadaic acid (OA), a PP-inhibitor, to sucrose-fed leaves reduced fructosylsucrose-synthesizing activity (FSS) induction in a dose-dependent manner. The exp...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-009-1002-7

    authors: Martínez-Noël GM,Tognetti JA,Salerno GL,Wiemken A,Pontis HG

    更新日期:2009-10-01 00:00:00

  • Characterization of a plant (rice) translin and its comparative analysis with human translin.

    abstract:MAIN CONCLUSION:For the first time, a plant (rice) translin was characterized. The rice translin protein, which was octameric in native state, bound efficiently to single-stranded DNA and RNA. Translin, a DNA-/RNA-binding protein, is expressed in brain, testis and in certain malignancies. It is involved in chromosomal ...

    journal_title:Planta

    pub_type: 杂志文章

    doi:10.1007/s00425-014-2092-4

    authors: Chittela RK,Gupta GD,Ballal A

    更新日期:2014-08-01 00:00:00