Comparative transcriptomic analysis between 'Summer Black' and its bud sport 'Nantaihutezao' during developmental stages.


MAIN CONCLUSION:4-coumarate-CoA ligase (VIT_02s0109g00250) and copper amine oxidase (VIT_17s0000g09100) played essential roles in contributing to the total soluble solid and total anthocyanin variations induced by bud sport in grape berries. Taste and color, which are important organoleptic qualities of grape berry, undergo rapid and substantial changes during development and ripening. In this study, we used two cultivars 'Summer Black' and its bud sport 'Nantaihutezao' to explore and identify differentially expressed genes associated with total soluble solid and anthocyanin during developmental stages using RNA-Seq. Overall, substantial differences in expression were observed across berry development between the two cultivars. 5388 genes were detected by weighted gene co-expression network analysis (WGCNA) associated with the total soluble solid (TSS) and anthocyanin contents variations. Several of these genes were significantly enriched in the phenylalanine metabolism pathway; two hub genes 4-coumarate-CoA ligase (VIT_02s0109g00250) and copper amine oxidase (VIT_17s0000g09100) played the most essential roles in relating to the total soluble solid and total anthocyanin variations induced by bud sport through Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment and co-expression network analysis. These findings provide insights into the molecular mechanism responsible for the bud sport phenotype.






Leng F,Ye Y,Zhu X,Zhang Y,Zhang Z,Shi J,Shen N,Jia H,Wang L




Has Abstract


2021-01-05 00:00:00
















  • Tissue integrity and RNA quality of laser microdissected phloem of potato.

    abstract::The phloem is an important conduit for the transport of signaling molecules including RNA. Phloem sap has served as a source of RNA to profile uncontaminated phloem transcriptomes but its collection is difficult in many species. Laser capture microdissection techniques offer a valuable alternative for isolating RNA fr...


    pub_type: 杂志文章


    authors: Yu Y,Lashbrook CC,Hannapel DJ

    更新日期:2007-08-01 00:00:00

  • Localization and uptake of 14C-IAA in relation to xylem regeneration in Coleus internodes.

    abstract::14C-IAA was applied to decapitated Coleus 5th internodes. Sections were radioautographed at various intervals after the application. The location of the label within cells and tissues is discussed. No accumulation of label occurred in the region where xylem cells regenerated. Label was particularly associated with xyl...


    pub_type: 杂志文章


    authors: Gee H

    更新日期:1972-03-01 00:00:00

  • The control of food mobilisation in seeds of Cucumis sativus L. : I. The influence of embryonic axis and testa on protein and lipid degradation.

    abstract::The development of maximal rates of lipid and protein hydrolysis in cucumber cotyledons depends upon the removal of the testa and the presence of the embryonic axis. The testa appears to exert at least part of its inhibitory influence by suppressing the development of enzyme activity associated with lipolysis and prot...


    pub_type: 杂志文章


    authors: Davies HV,Chapman JM

    更新日期:1979-10-01 00:00:00

  • Analysis of the phytochrome gene family in Ceratodon purpureus by gene targeting reveals the primary phytochrome responsible for photo- and polarotropism.

    abstract::Using gene targeting by homologous recombination in Ceratodon purpureus, we were able to knock out four phytochrome photoreceptor genes independently and to analyze their function with respect to red light dependent phototropism, polarotropism, and chlorophyll content. The strongest phenotype was found in knock-out li...


    pub_type: 杂志文章


    authors: Mittmann F,Dienstbach S,Weisert A,Forreiter C

    更新日期:2009-06-01 00:00:00

  • Metabolism of indole-3-acetaldoxime in plants.

    abstract::Living tissues of diverse plants representing 17 families were infiltrated with indole-3-acetaldoxime (IAAld oxime) in phosphate buffer, pH 6, and incubated for 3 hours at 25°C. Indole compounds were then extracted, separated and identified by paper or thin-layer chromatography (TLC). Indole-3-acetic acid (IAA) was qu...


    pub_type: 杂志文章


    authors: Rajagopal R,Larsen P

    更新日期:1972-03-01 00:00:00

  • Osmotic responses of maize roots : Water and solute relations.

    abstract::Water and solute relations of excised seminal roots of young maize (Zea mays L) plants, have been measured using the root pressure probe. Upon addition of osmotic solutes to the root medium, biphasic root pressure relaxations were obtained as theoretically expected. The relaxations yielded the hydraulic conductivity L...


    pub_type: 杂志文章


    authors: Steudle E,Frensch J

    更新日期:1989-03-01 00:00:00

  • Cellular localization of nonhost resistance reactions of parsley (Petroselinum crispum) to fungal infection.

    abstract::The response of parsley seedlings (Petroselinum crispum) inoculated with zoospores of the soybean-pathogenic fungus, Phytophthora megasperma f. sp. glycinea, ranged from "immunity" to "physiological susceptibility" depending on the post-inoculation environmental conditions. Typical nonhost resistance reactions, hypers...


    pub_type: 杂志文章


    authors: Jahnen W,Hahlbrock K

    更新日期:1988-02-01 00:00:00

  • Coaction of blue light and light absorbed by phytochrome in control of glutamine synthetase gene expression in Scots pine (Pinus sylvestris L.) seedlings.

    abstract::The level of plastidic glutamine synthetase (GS; EC in the cotyledonary whorl of the Scots pine (Pinus sylvestris L.) seedling was previously reported to be regulated by light. In the present paper we report on the control by light of the GS transcript level. A full-length GS cDNA clone of Scots pine was isol...


    pub_type: 杂志文章


    authors: Elmlinger MW,Bolle C,Batschauer A,Oelmüller R,Mohr H

    更新日期:1994-01-01 00:00:00

  • Floral visitation and reproductive traits of Stamenoid petals, a naturally occurring floral homeotic variant of Capsella bursa-pastoris (Brassicaceae).

    abstract::Homeotic changes played a considerable role during the evolution of flowers, but how floral homeotic mutants initially survive in nature has remained enigmatic. To better understand the evolutionary potential of floral homeotic mutants, we established as a model system Stamenoid petals (Spe), a natural variant of Caps...


    pub_type: 杂志文章


    authors: Ziermann J,Ritz MS,Hameister S,Abel C,Hoffmann MH,Neuffer B,Theissen G

    更新日期:2009-11-01 00:00:00

  • Medicago truncatula syntaxin SYP132 defines the symbiosome membrane and infection droplet membrane in root nodules.

    abstract::Symbiotic association of legume plants with rhizobia bacteria culminates in organogenesis of nitrogen-fixing root nodules. In indeterminate nodules, plant cells accommodate rhizobial infection by enclosing each bacterium in a membrane-bound, organelle-like compartment called the symbiosome. Numerous symbiosomes occupy...


    pub_type: 杂志文章


    authors: Catalano CM,Czymmek KJ,Gann JG,Sherrier DJ

    更新日期:2007-02-01 00:00:00

  • Hydrolysis and resynthesis of sucrose and related sugars in the developing stem tissues of Eucalyptus regnans trees.

    abstract::When cambial tissues are removed from tree stems of Eucalyptus regnans F. Muell. and incubated in vitro with [(14)C]glucose, [(14)C]galactose and [(14)C]fructose in the presence of sufficient PVP (polyvinylpyrrolidone) radioactive sucrose, members of the raffinose family and related sugars are synthesized. These resul...


    pub_type: 杂志文章


    authors: Tham SH,Stewart CM

    更新日期:1976-01-01 00:00:00

  • Plant acclimation to elevated CO₂ affects important plant functional traits, and concomitantly reduces plant colonization rates by an herbivorous insect.

    abstract::Plants growing under elevated CO₂ concentration may acclimatize to this environmental change by modification of chemical, physiological, and/or morphological traits. As a consequence, not only plant functioning but also plant-insect interactions might be altered, with important consequences particularly for agricultur...


    pub_type: 杂志文章


    authors: Klaiber J,Najar-Rodriguez AJ,Piskorski R,Dorn S

    更新日期:2013-01-01 00:00:00

  • Lanosterol synthase-like is involved with differential accumulation of steroidal glycoalkaloids in potato.

    abstract:MAIN CONCLUSION:Phytosterol homeostasis may be maintained in leaves through diversion of intermediates into glycoalkaloid biosynthesis, whereas in tuber flesh, excess intermediates are catalyzed by tuber-specific StLAS - like , resulting in low tuber glycoalkaloids. Lanosterol synthase (LAS) and cycloartenol synthase (...


    pub_type: 杂志文章


    authors: Kumar A,Fogelman E,Weissberg M,Tanami Z,Veilleux RE,Ginzberg I

    更新日期:2017-12-01 00:00:00

  • Towards the development of an oral vaccine against porcine cysticercosis: expression of the protective HP6/TSOL18 antigen in transgenic carrots cells.

    abstract:MAIN CONCLUSION:The Taenia solium HP6/TSOL18 antigen was produced in carrot cells, yielding an immunogenic protein that induced significant protection in an experimental murine model against T. crassiceps cysticercosis when orally administered. This result supports the potential of HP6/TSOL18-carrot as a low-cost anti-...


    pub_type: 杂志文章


    authors: Monreal-Escalante E,Govea-Alonso DO,Hernández M,Cervantes J,Salazar-González JA,Romero-Maldonado A,Rosas G,Garate T,Fragoso G,Sciutto E,Rosales-Mendoza S

    更新日期:2016-03-01 00:00:00

  • Aspartic-acid synthesis in C3 plants.

    abstract::In a previous study (Melzer and O'Leary, 1987, Plant Physiol. 84, 58-60), we used isotopic methods to show that a substantial fraction of protein-bound aspartic acid in tobacco is derived from anaplerotic synthesis via phosphoenolpyruvate (PEP) carboxylase. Similar studies in soybean (Glycine max L.) and spinach (Spin...


    pub_type: 杂志文章


    authors: Melzer E,O'Leary MH

    更新日期:1991-10-01 00:00:00

  • ATP-dependent CA(2+) transport in endoplasmic reticulum isolated from roots ofLepidium sativum L.

    abstract::Endoplasmic reticulum membranes were isolated from roots of garden cress (Lepidium sativum L. cv Krause) using differential and discontinuous sucrose gradient centrifugation. The endoplasmic reticulum fraction was 80% rough endoplasmic reticulum oriented with the cytoplasmic surface directed outward and contaminated w...


    pub_type: 杂志文章


    authors: Buckhout TJ

    更新日期:1983-01-01 00:00:00

  • Formation of bound gibberellins inPharbitis nil.

    abstract::Developing seeds ofPharbitis nil accumulate free as well as bound gibberellins until a maximum level is reached at approximately 25 days after anthesis. Seeds from CCC-treated parent plants have a strongly reduced level of free as well as bound gibberellins. When different spray reagents were used it was found that tr...


    pub_type: 杂志文章


    authors: Barendse GW

    更新日期:1971-12-01 00:00:00

  • Phytochrome in cucumber seeds.

    abstract::Phytochrome was found by direct spectrophotometry to be present in whole dry seeds of cucumber. This pigment is spectroscopically different from the pigment found in etiolated plants. It shows the phenomenon of inverse reversion; in darkness, the red-absorbing form (Pr) reverts slowly to the far-red-absorbing form (Pf...


    pub_type: 杂志文章


    authors: Spruit CJ,Mancinelli AL

    更新日期:1969-12-01 00:00:00

  • Cytokinins in transfer RNA of normal and crown-gall tissue of Vinca rosea.

    abstract::cis-Zeatin riboside was identified in transfer-RNA hydrolysates from both normal and crown-gall tissue of Vinca rosea L. The trans-isomer was associated exclusively with the crowngall transfer-RNA. The importance of these observations is discussed in relation to biosynthesis of free cytokinins. ...


    pub_type: 杂志文章


    authors: Palni LM,Horgan R

    更新日期:1983-10-01 00:00:00

  • Osmotic adjustment and the inhibition of leaf, root, stem and silk growth at low water potentials in maize.

    abstract::The expansion growth of plant organs is inhibited at low water potentials (Ψ w), but the inhibition has not been compared in different organs of the same plant. Therefore, we determined elongation rates of the roots, stems, leaves, and styles (silks) of maize (Zea mays L.) as soil water was depleted. The Ψ w was measu...


    pub_type: 杂志文章


    authors: Westgate ME,Boyer JS

    更新日期:1985-07-01 00:00:00

  • Role of intracellular carbonic anhydrase in inorganic-carbon assimilation by Porphyridium purpureum.

    abstract::Air-grown cells of Porphyridium purpurem contain appreciable carbonic-anhydrase activity, comparable to that in air-grown Chlamydomonas reinhardtii, but activity is repressed in CO2-grown cells. Assay of carbonic-anhydrase activity in intact cells and cell extracts shows all activity to be intracellular in Porphyridiu...


    pub_type: 杂志文章


    authors: Dixon GK,Patel BN,Merrett MJ

    更新日期:1987-12-01 00:00:00

  • Molecular cloning, recombinant gene expression, and antifungal activity of cystatin from taro (Colocasia esculenta cv. Kaosiung no. 1).

    abstract::A cDNA clone, designated CeCPI, encoding a novel phytocystatin was isolated from taro corms (Colocasia esculenta) using both degenerated primers/RT-PCR amplification and 5'-/3'-RACE extension. The full-length cDNA gene is 1,008 bp in size, encodes 206 amino acid residues, with a deduced molecular weight of 29 kDa. It ...


    pub_type: 杂志文章


    authors: Yang AH,Yeh KW

    更新日期:2005-06-01 00:00:00

  • Endogenous cytokinins during embryogenesis in an anise cell culture (Pimpinella anisum L.).

    abstract::Endogenous levels of cytokinins in an anise cell culture were determined by the use of radioimmunoassay and gas chromatography-mass spectrometry in combination with single-ion monitoring, during proembryonal and embryonal development. In both cultures the highest cytokinin levels were correlated with logarithmic growt...


    pub_type: 杂志文章


    authors: Ernst D,Oesterhelt D,Schäfer W

    更新日期:1984-05-01 00:00:00

  • The action of exogenous gibberellic acid on isocitrate lyase -mRNA in germinating castor bean seeds.

    abstract::Gibberellic acid (GA3) stimulates isocitrate lyase activity of the endosperm during germination of castor bean seeds. Isocitrate lyase from castor bean was purified and an antibody to it was prepared from rabbit serum. This antibody was used to measure the amounts of isocitrate lyase-mRNA using an in vitro translation...


    pub_type: 杂志文章


    authors: Martin C,Northcote DH

    更新日期:1982-03-01 00:00:00

  • Mining the natural genetic variation in Arabidopsis thaliana for adaptation to sequential abiotic and biotic stresses.

    abstract:MAIN CONCLUSION:In this genome-wide association study, we obtained novel insights into the genetic basis of the effect of herbivory or drought stress on the level of resistance against the fungus Botrytis cinerea. In nature, plants function in complex environments where they encounter different biotic and abiotic stres...


    pub_type: 杂志文章


    authors: Coolen S,Van Pelt JA,Van Wees SCM,Pieterse CMJ

    更新日期:2019-04-01 00:00:00

  • Degradation of ribulose-1,5-bisphosphate carboxylase by proteolytic enzymes from crude extracts of wheat leaves.

    abstract::In crude extracts from the primary leaf of wheat seedlings, Triticum aestivum L., cv. Olympic, maximum proteinase activity, as determined by measuring the rate of release of amino nitrogen from ribulose-bisphosphate carboxylase (RuBPCase), was found to be obtained only when EDTA and L-cysteine were included in the ext...


    pub_type: 杂志文章


    authors: Peoples MB,Dalling MJ

    更新日期:1978-01-01 00:00:00

  • Production of ethylene by excised segments of plant tissue prior to the effect of wounding.

    abstract::A delay of 20 to 30 min precedes a rapid increase in the production of ethylene when segments are excised from the petioles of tomato plants. Measurements made during this early phase may be better estimates of production by petioles on the intact plant than those made at later times. ...


    pub_type: 杂志文章


    authors: Jackson MB,Campbell DJ

    更新日期:1976-01-01 00:00:00

  • 1-N-naphthylphthalamic acid and 2,3,5-triiodobenzoic acid : In-vitro binding to particulate cell fractions and action on auxin transport in corn coleoptiles.

    abstract::Auxin transport in corn coleoptile sections was inhibited by 2,3,5-triiodobenzoic acid (TIBA) as well as by 1-N-naphthylphthalamic acid (NPA); this inhibition was effected within 1 min of application.A particulate cell fraction-presumably plasma-membrane vesicles-specifically binds NPA and properties of these binding ...


    pub_type: 杂志文章


    authors: Thomson KS,Hertel R,Müller S,Tavares JE

    更新日期:1973-12-01 00:00:00

  • Fungal and plant gene expression during the colonization of cacao seedlings by endophytic isolates of four Trichoderma species.

    abstract::Endophytic isolates of Trichoderma species are being considered as biocontrol agents for diseases of Theobroma cacao (cacao). Gene expression was studied during the interaction between cacao seedlings and four endophytic Trichoderma isolates, T. ovalisporum-DIS 70a, T. hamatum-DIS 219b, T. harzianum-DIS 219f, and Tric...


    pub_type: 杂志文章


    authors: Bailey BA,Bae H,Strem MD,Roberts DP,Thomas SE,Crozier J,Samuels GJ,Choi IY,Holmes KA

    更新日期:2006-11-01 00:00:00

  • [Respiratory pathways in suberin-synthesizing and proliferating potato tuber tissue after derepression].

    abstract::The typical wound respiration drift (O2 und CO2) of 1 mm disks, which amounts to 6 times the values measured immediately after derepression, develops only if cicatrization takes place, but never in proliferating or non-proliferating tissues without suberin biosynthesis. The respiration rate of the latter is merely app...


    pub_type: 杂志文章


    authors: Lange H

    更新日期:1970-06-01 00:00:00