Comparative transcriptomic analysis between 'Summer Black' and its bud sport 'Nantaihutezao' during developmental stages.


MAIN CONCLUSION:4-coumarate-CoA ligase (VIT_02s0109g00250) and copper amine oxidase (VIT_17s0000g09100) played essential roles in contributing to the total soluble solid and total anthocyanin variations induced by bud sport in grape berries. Taste and color, which are important organoleptic qualities of grape berry, undergo rapid and substantial changes during development and ripening. In this study, we used two cultivars 'Summer Black' and its bud sport 'Nantaihutezao' to explore and identify differentially expressed genes associated with total soluble solid and anthocyanin during developmental stages using RNA-Seq. Overall, substantial differences in expression were observed across berry development between the two cultivars. 5388 genes were detected by weighted gene co-expression network analysis (WGCNA) associated with the total soluble solid (TSS) and anthocyanin contents variations. Several of these genes were significantly enriched in the phenylalanine metabolism pathway; two hub genes 4-coumarate-CoA ligase (VIT_02s0109g00250) and copper amine oxidase (VIT_17s0000g09100) played the most essential roles in relating to the total soluble solid and total anthocyanin variations induced by bud sport through Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment and co-expression network analysis. These findings provide insights into the molecular mechanism responsible for the bud sport phenotype.






Leng F,Ye Y,Zhu X,Zhang Y,Zhang Z,Shi J,Shen N,Jia H,Wang L




Has Abstract


2021-01-05 00:00:00
















  • Effects of microtubule agents on the spatial and electrical properties of the plasma membrane inChara corallina.

    abstract::The freshwater algaChara corallina Klein ex Willd., em. R.D.W. (=C. australis R.Br.) develops alternating outward (acid) and inward (alkaline) current areas on its surface when illuminated. Exposure of cells to vinblastine, colchicine, or oryzalin caused a reduction in and a shifting of this extracellular current patt...


    pub_type: 杂志文章


    authors: Fisahn J,Lucas WJ

    更新日期:1990-11-01 00:00:00

  • Effects of nutrients and light pretreatment on phytochrome-mediated fern-spore germination.

    abstract::Spores of the ferns, Dryopteris filix-mas, D. paleacea and Polystichum minutum, sown on plain agar in quartz-distilled water, required several hours of red light in order to germinate. When, however, water agar was replaced by agar made up with a mineral nutrition medium, a single pulse of red light (about 1 min) was ...


    pub_type: 杂志文章


    authors: Haupt W

    更新日期:1985-05-01 00:00:00

  • Functional analysis of oxidative burst in sugarcane smut-resistant and -susceptible genotypes.

    abstract:MAIN CONCLUSION:Smut pathogen induced an early modulation of the production and scavenging of reactive oxygen species during defence responses in resistant sugarcane that coincided with the developmental stages of fungal growth. Sporisorium scitamineum is the causal agent of sugarcane smut disease. In this study, we ch...


    pub_type: 杂志文章


    authors: Peters LP,Carvalho G,Vilhena MB,Creste S,Azevedo RA,Monteiro-Vitorello CB

    更新日期:2017-04-01 00:00:00

  • Synchronisation of cell division in the shoot apex of Silene in relation to flower initiation.

    abstract::In plants of Silene coeli-rosa, induced to flower by 7 LD, synchronisation of cell division in 20 per cent or more of the cells in the shoot apical dome was found on the 8th and 9th days after the beginning of induction, during the plastochron before sepal initiation. Synchronisation was inferred from the changes in t...


    pub_type: 杂志文章


    authors: Francis D,Lyndon RF

    更新日期:1979-01-01 00:00:00

  • Cultures of Gossypium barbadense cotton ovules offer insights into the microtubule-mediated control of fiber cell expansion.

    abstract:MAIN CONCLUSION:A novel method for culturing ovules of Gossypium barbadense allowed in vitro comparisons with Gossypium hirsutum and revealed variable roles of microtubules in controlling cotton fiber cell expansion. Cotton fibers undergo extensive elongation and secondary wall thickening as they develop into our most ...


    pub_type: 杂志文章


    authors: Pierce ET,Graham BP,Stiff MR,Osborne JA,Haigler CH

    更新日期:2019-05-01 00:00:00

  • [Ferredoxin from Bumilleriopsis filiformis Vischer].

    abstract::Ferredoxin from the alga Bumilleriopsis filiformis Vischer (Xanthophyceae) is characterized by comparing some of its properties with spinach ferredoxin.It is similar to the known plant ferredoxins in the following points: a) Absorption spectrum. b) Molecular weight. c) Amino acid composition (approx. 100 amino acid re...


    pub_type: 杂志文章


    authors: Böger P

    更新日期:1970-06-01 00:00:00

  • Improved laser capture microdissection (LCM)-based method for isolation of RNA, including miRNA and expression analysis in woody apple bud meristem.

    abstract:MAIN CONCLUSION:Isolation of high-quality RNA, including miRNA, from microscopic woody apple bud meristem using laser capture microdissection-based method. It is often challenging to study the expression of microRNAs (miRNAs) or genes in less accessible inner tissues of tree species rich in polyphenols or polysaccharid...


    pub_type: 杂志文章


    authors: Verma S,Gautam V,Sarkar AK

    更新日期:2019-06-01 00:00:00

  • Phytochrome-mediated regulation of β-amylase mRNA level in mustard (Sinapis alba L.) cotyledons.

    abstract::Phytochrome, activated by continuous red light, increases the amount of total polyadenylated RNA during photomorphogenesis of mustard (Sinapis alba L.) cotyledons. In-vitro translation of total polyadenylated RNA in a reticulocyte translation system has shown that the activity of translatable β-amylase mRNA is increas...


    pub_type: 杂志文章


    authors: Sharma R,Schopfer P

    更新日期:1987-07-01 00:00:00

  • Effect of aerobic and anaerobic conditions on the in vivo nitrate reductase assay in spinach leaves.

    abstract::(15)N-labelled nitrate was used to show that nitrate reduction by leaf discs in darkness was suppressed by oxygen, whereas nitrite present within the cell could be reduced under aerobic dark conditions. In other experiments, unlabelled nitrite, allowed to accumulate in the tissue during the dark anaerobic reduction of...


    pub_type: 杂志文章


    authors: Mann AF,Hucklesby DP,Hewitt EJ

    更新日期:1979-01-01 00:00:00

  • The role of β-dimethylsulphoniopropionate, glycine betaine and homarine in the osmoacclimation of Platymonas subcordiformis.

    abstract::The tertiary sulphonium compound, β-dimethylsulphoniopropionate (DMSP) and the quaternary ammonium compounds glycine betaine and homarine are important osmotica in Platymonas subcordiformis cells. Following hypersaline stresses the compounds were accumulated after a lag period of 3 h and equilibrium concentrations wer...


    pub_type: 杂志文章


    authors: Dickson DM,Kirst GO

    更新日期:1986-04-01 00:00:00

  • Identification of symplasmic domains in the embryo and seed of Sedum acre L. (Crassulaceae).

    abstract:MAIN CONCLUSION:Our study demonstrated that symplasmic communication between Sedum acre seed compartments and the embryo proper is not uniform. The presence of plasmodesmata (PD) constitutes the structural basis for information exchange between cells, and symplasmic communication is involved in the regulation of cell d...


    pub_type: 杂志文章


    authors: Wróbel-Marek J,Kurczyńska E,Płachno BJ,Kozieradzka-Kiszkurno M

    更新日期:2017-03-01 00:00:00

  • Characterization of long-term extension of isolated cell walls from growing cucumber hypocotyls.

    abstract::Walls from frozen-thawed cucumber (Cucumis sativus L.) hypocotyls extend for many hours when placed in tension under acidic conditions. This study examined whether such "creep" is a purely physical process dependent on wall viscoelasticity alone or whether enzymatic activities are needed to maintain wall extension. Ch...


    pub_type: 杂志文章


    authors: Cosgrove DJ

    更新日期:1989-01-01 00:00:00

  • Phloem unloading in aerial roots of Monstera deliciosa.

    abstract::Plants of Monstera deliciosa Liebm. pruned to exemplars with one leaf and one aerial root were labeled with 7.4 MBq (14)CO2 over the leaf blade. Microautoradiographs of soluble and insoluble radioactivity were prepared from three different regions of the aerial root. In addition, histochemical localization of ATPase w...


    pub_type: 杂志文章


    authors: Eschrich W

    更新日期:1983-05-01 00:00:00

  • Changes in respiration of mitochondria isolated from cotyledons of ethylene-treated pea seedlings.

    abstract::Treatment of intact, germinating pea (Pisum sativum L. cv. Homesteader) seedlings with ethylene enhanced the cyanide-resistant respiration of mitochondria isolated from the cotyledons. The level of enhancement depended on the concentration of ethylene. Thus, exposure to 0.9 μl·l(-1) of ethylene in air for days 4-6 of ...


    pub_type: 杂志文章


    authors: Duncan I,Spencer M

    更新日期:1987-01-01 00:00:00

  • "Arabidobrassica": Chromosomal recombination and morphogenesis in asymmetric intergeneric hybrid cells.

    abstract::A somatic hybrid cell line, cloned from an individual protoplast-fusion product between Arabidopsis thaliana and Brassica campestris, gave rise to formation of numerous plants differing drastically in morphology. Analysis of these various regenerants, all of which originated from one and the same heterokaryon derived ...


    pub_type: 杂志文章


    authors: Hoffmann F,Adachi T

    更新日期:1981-12-01 00:00:00

  • Maize glutathione-dependent formaldehyde dehydrogenase: protein sequence and catalytic properties.

    abstract::Glutathione-dependent formaldehyde dehydrogenase (FDH; EC has been purified 3900-fold from maize cell-suspension cultures to a specific activity of 4.68 mumol (mg protein)-1 min-1. The homogeneous enzyme consisted of two identical subunits with a molecular mass of 42 kDa, and an isoelectric point of 5.8. Eigh...


    pub_type: 杂志文章


    authors: Wippermann U,Fliegmann J,Bauw G,Langebartels C,Maier K,Sandermann H Jr

    更新日期:1999-03-01 00:00:00

  • Tracking transience: a method for dynamic monitoring of biological events in Arabidopsis thaliana biosensors.

    abstract:MAIN CONCLUSION:The activation and level of expression of an endogenous, stress-responsive biosensor (bioreporter) can be visualized in real-time and non-destructively using highly accessible equipment (fluorometer). Biosensor output can be linked to computer-controlled systems to enable feedback-based control of a gre...


    pub_type: 杂志文章


    authors: Hines G,Modavi C,Jiang K,Packard A,Poolla K,Feldman L

    更新日期:2015-11-01 00:00:00

  • Genome-wide identification, sequence characterization, and protein-protein interaction properties of DDB1 (damaged DNA binding protein-1)-binding WD40-repeat family members in Solanum lycopersicum.

    abstract:MAIN CONCLUSIONS:One hundred DDB1 (damaged DNA binding protein-1)-binding WD40-repeat domain (DWD) family genes were identified in the S. lycopersicum genome. The DWD genes encode proteins presumably functioning as the substrate recognition subunits of the cullin4-ring ubiquitin E3 ligase complex. These findings provid...


    pub_type: 杂志文章


    authors: Zhu Y,Huang S,Miao M,Tang X,Yue J,Wang W,Liu Y

    更新日期:2015-06-01 00:00:00

  • Genome-wide identification and expression analysis of sulfate transporter (SULTR) genes in potato (Solanum tuberosum L.).

    abstract:MAIN CONCLUSION:Solanum tuberosum genome analysis revealed 12 StSULTR genes encoding 18 transcripts. Among genes annotated at group level ( StSULTR I-IV), group III members formed the largest SULTRs-cluster and were potentially involved in biotic/abiotic stress responses via various regulatory factors, and stress and s...


    pub_type: 杂志文章


    authors: Vatansever R,Koc I,Ozyigit II,Sen U,Uras ME,Anjum NA,Pereira E,Filiz E

    更新日期:2016-12-01 00:00:00

  • Hydrogen evolution by several algae.

    abstract::Out of 33 strains of unicellular algae examined, H2 evolution was observed only in species of Chlamydomonas, Chlorella and Scenedesmus. While the photoevolution of H2 by these algae was generally stimulated both by an organic substrate and by the uncoupler CCCP(1), response to DCMU varied. On the basis of the response...


    pub_type: 杂志文章


    authors: Healey FP

    更新日期:1970-09-01 00:00:00

  • Fe-deficiency-induced expression of bHLH104 enhances Fe-deficiency tolerance of Arabidopsis thaliana.

    abstract:MAIN CONCLUSION:Expression of bHLH104 - GFP driven by the MYB72 promoter improves plants' tolerance to Fe deficiency and increases seed Fe concentrations. Iron (Fe) deficiency causes reduced crop yield and quality. In humans, Fe deficiency is directly associated with Fe-deficiency anemia. Therefore, breeding Fe-deficie...


    pub_type: 杂志文章


    authors: Wang C,Yao X,Yu D,Liang G

    更新日期:2017-09-01 00:00:00

  • Photosynthate transport in stems of Phaseolus vulgaris L. treated with gibberellic acid, indole-3-acetic acid or kinetin. : Effects at the site of hormone application.

    abstract::Gibberellic acid (GA3), indole-3-acetic acid (IAA) or kinetin ((6)N-furfurylaminopurine) applied to the apical regions of decapitated stems of derooted Phaseolus vulgaris plants, promoted (14)C-photosynthate transport to the site of hormone application. Hormonal promotion of acropetal photosynthate transport was assoc...


    pub_type: 杂志文章


    authors: Hayes PM,Patrick JW

    更新日期:1985-11-01 00:00:00

  • Protein synthesis in tomato fruit locule tissue: The sites of synthesis and the pathway of carbon into protein.

    abstract::The net increase in total protein during development of tomato fruit locule tissue has been further investigated with respect to the sites of protein synthesis within the cells. The results point to the plastids as being the major sites of protein synthesis. This is supported by radioisotope experiments in which label...


    pub_type: 杂志文章


    authors: Davies JW,Cocking EC

    更新日期:1967-09-01 00:00:00

  • Development and differentiation of haploid Lycopersicon esculentum (tomato).

    abstract::Haploid callus cultures of selected races of Lycopersicon (tomato) species can be obtained from anther culture. This is a further demonstration of a proposed general method of haploid culture developed with Arabidopsis thaliana. Differentiation of haploid callus of Lycopersicon esculentum can be controlled both in the...


    pub_type: 杂志文章


    authors: Gresshoff PM,Doy CH

    更新日期:1972-06-01 00:00:00

  • Influence of daylength on gibberellin metabolism and stem growth in Silene armeria.

    abstract::When radioactive gibberellin A5 ((3)H-GA5) was applied to the apices and surrounding young leaves of the long-day plant Silene armeria, it was partially converted to at least two other acidic substances. One of them was similar to GA3 in chromatographic, but not in biological properties. The other metabolite was more ...


    pub_type: 杂志文章


    authors: van den Ende H,Zeevaart JA

    更新日期:1971-06-01 00:00:00

  • Glyoxylate decarboxylation during glycollate oxidation by pea leaf extracts: significance of glyoxylate and extract concentrations.

    abstract::Hydrogen peroxide-dependent glyoxylate decarboxylation occurring during glycollate oxidation by pea leaf extracts (Pisum sativum L.) has been studied in relation to the effects of glyoxylate and extract concentration. With a saturating concentration of glycollate, decarboxylation was greatly stimulated by raising the ...


    pub_type: 杂志文章


    authors: Walton NJ

    更新日期:1982-08-01 00:00:00

  • Fitness costs associated with multiple resistance to dicamba and atrazine in Chenopodium album.

    abstract:MAIN CONCLUSION:Detrimental pleiotropic effects of resistance mutation(s) were observed for multiple-resistant phenotypes (resistant to both atrazine and dicamba). The multiple-resistant phenotypes had lower growth rates and less capacity for vegetative growth compared to the phenotypes only resistant to atrazine. The ...


    pub_type: 杂志文章


    authors: Ghanizadeh H,Harrington KC

    更新日期:2019-03-01 00:00:00

  • Increase of protein synthesis after isolation in dormant and afterripened Agrostemma githago L. embryos.

    abstract::Isolated embryos are more suitable for in vivo study of protein synthesis than non-isolated embryos because, after isolation, the uptake of labeled amino acids is about 1000 times higher. However, isolation also stimulates protein synthesis: Up to 4 h after isolation, the capacity to incorporate labeled amino acids in...


    pub_type: 杂志文章


    authors: de Klerk GJ

    更新日期:1981-12-01 00:00:00

  • Transcription and translation for carotenoid synthesis in Chlamydomonas reinhardtii.

    abstract::The sites of transcription and translation of carotenoid pigments were studied in synchronously grown cells of Chlamydomonas reinhardtii Dang. Rifampicin, cycloheximide and spectinomycin were used to distinguish between the nuclear-cytoplasmic genetic system and the genetic system of the chloroplast. Since rifampicin ...


    pub_type: 杂志文章


    authors: Sirevåg R,Levine RP

    更新日期:1973-03-01 00:00:00

  • Endogenous hydrogen peroxide is a key factor in the yeast extract-induced activation of biphenyl biosynthesis in cell cultures of Sorbus aucuparia.

    abstract::Biphenyls are unique phytoalexins produced by plants belonging to Pyrinae, a subtribe of the economically important Rosaceae family. The formation of aucuparin, a well-known biphenyl, is induced by yeast extract (YE) in cell cultures of Sorbus aucuparia. However, the molecular mechanism underlying YE-induced activatio...


    pub_type: 杂志文章


    authors: Qiu X,Lei C,Huang L,Li X,Hao H,Du Z,Wang H,Ye H,Beerhues L,Liu B

    更新日期:2012-01-01 00:00:00