Genome editing technologies: CRISPR, LEAPER, RESTORE, ARCUT, SATI, and RESCUE.

Abstract:

:Genome editing technologies include techniques used for desired genetic modifications and allow the insertion, modification or deletion of specific DNA fragments. Recent advances in genome biology offer unprecedented promise for interdisciplinary collaboration and applications in gene editing. New genome editing technologies enable specific and efficient genome modifications. The sources that inspire these modifications and already exist in the genome are DNA degradation enzymes and DNA repair pathways. Six of these recent technologies are the clustered regularly interspaced short palindromic repeats (CRISPR), leveraging endogenous ADAR for programmable editing of RNA (LEAPER), recruiting endogenous ADAR to specific transcripts for oligonucleotide-mediated RNA editing (RESTORE), chemistry-based artificial restriction DNA cutter (ARCUT), single homology arm donor mediated intron-targeting integration (SATI), RNA editing for specific C-to-U exchange (RESCUE). These technologies are widely used from various biomedical researches to clinics, agriculture, and allow you to rearrange genomic sequences, create cell lines and animal models to solve human diseases. This review emphasizes the characteristics, superiority, limitations, also whether each technology can be used in different biological systems and the potential application of these systems in the treatment of several human diseases.

journal_name

EXCLI J

journal_title

EXCLI journal

authors

Görücü Yilmaz S

doi

10.17179/excli2020-3070

subject

Has Abstract

pub_date

2021-01-04 00:00:00

pages

19-45

issn

1611-2156

pii

2020-3070

journal_volume

20

pub_type

杂志文章,评审
  • Immunoregulatory, proliferative and anti-oxidant effects of nanocurcuminoids on adipose-derived mesenchymal stem cells.

    abstract::Curcuminoids are dietary complexes extracted from the seeds of Curcuma longa L. that contain curcumin, bisdemethoxycurcumin and desmethoxycurcumin. Curcuminoids are popular for their pleiotropic therapeutic functions, such as their anti-inflammatory and anti-oxidant effects. Nonetheless, their clinical use is associat...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2019-1366

    authors: Yousefi F,Lavi Arab F,Jaafari MR,Rastin M,Tabasi N,Hatamipour M,Nikkhah K,Mahmoudi M

    更新日期:2019-06-17 00:00:00

  • High glucose inhibits osteogenic differentiation through the BMP signaling pathway in bone mesenchymal stem cells in mice.

    abstract::Patients with diabetes tend to have an increased risk of osteoporosis that may be related to hyperglycemia. In vitro evidence has shown that high glucose can affect the proliferation and osteogenic differentiation of mesenchymal stem cells (MSCs). Tissue regeneration depends mainly on MSCs. However, the exact mechanis...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:

    authors: Wang J,Wang B,Li Y,Wang D,Lingling E,Bai Y,Liu H

    更新日期:2013-06-27 00:00:00

  • A novel hybrid method of beta-turn identification in protein using binary logistic regression and neural network.

    abstract::From both the structural and functional points of view, β-turns play important biological roles in proteins. In the present study, a novel two-stage hybrid procedure has been developed to identify β-turns in proteins. Binary logistic regression was initially used for the first time to select significant sequence param...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:

    authors: Asghari MP,Hayatshahi SH,Abdolmaleki P

    更新日期:2012-07-05 00:00:00

  • Electro-acupuncture promotes the proliferation of neural stem cells and the survival of neurons by downregulating miR-449a in rat with spinal cord injury.

    abstract::The aim of this study is to investigate the mechanism of electro-acupuncture (EA) on the recovery of injured spinal cord. Rats were randomly divided into normal control, sham-operated, SCI, SCI+EA group and T10 segment spinal cord injury (SCI) rat model was established by the modified Allen's method. After 7 days, the...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2017-123

    authors: Zhu Y,Wu Y,Zhang R

    更新日期:2017-03-23 00:00:00

  • Isolation and cultivation of adult primary bovine hepatocytes from abattoir derived liver.

    abstract::The aim was to establish a cell culture of adult primary bovine hepatocytes obtained from liver following slaughter and to cultivate the cells in a sandwich culture. Cells and medium samples were taken after separation of cells (day 0), during monolayer (days 1, 2 and 3) and during sandwich culture (days 1, 2, 3, 4, 7...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2016-794

    authors: Ehrhardt S,Schmicke M

    更新日期:2016-12-22 00:00:00

  • Effect of prolyl hydroxylase domain 2 haplodeficiency on liver progenitor cell characteristics in early mouse hepatocarcinogenesis.

    abstract::Activation of the hypoxia-inducible factor (HIF)-pathway in hepatocellular carcinoma (HCC) induces therapy resistant tumours, characterized by increased liver progenitor cell (LPCs) characteristics and poor prognosis. We previously reported corresponding results in mice with HCC in which hypoxia was mimicked by prolyl...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2016-607

    authors: Bogaerts E,Paridaens A,Verhelst X,Carmeliet P,Geerts A,Van Vlierberghe H,Devisscher L

    更新日期:2016-11-11 00:00:00

  • Phytochemical evaluation, antioxidant assay, antibacterial activity and determination of cell viability (J774 and THP1 alpha cell lines) of P. sylvestris leaf crude and methanol purified fractions.

    abstract::Phoenix sylvestris (Arecaceae family) known as Indian Date Palm has been identified as a component of traditional medicine against various ailments. The present study was focused on phytochemical screening of crude hexane, dichloromethane and methanol leaf extracts. The crude extracts showed the presence of alkaloids,...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2015-689

    authors: Sharma DC,Shukla R,Ali J,Sharma S,Bajpai P,Pathak N

    更新日期:2016-02-05 00:00:00

  • Serum leptin changes with metformin treatment in polycystic ovarian syndrome: correlation with ovulation, insulin and testosterone levels.

    abstract::The relationship between leptin, insulin resistance and other hormonal parameters in polycystic ovarian syndrome (PCOS) is controversial. We investigated the effect of metformin on leptin levels in women with PCOS. Thirty women with PCOS received metformin 500 mg thrice a day. After two months of metformin treatment t...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:

    authors: Upadhyaya P,Rehan HS,Seth V

    更新日期:2011-02-24 00:00:00

  • Isolation, characterization and hypolipidemic activity of ferulic acid in high-fat-diet-induced hyperlipidemia in laboratory rats.

    abstract::Prosopis cineraria (L.) Druce (Leguminosae) (syn. Prosopis spicigera L.) has antidiabetic and antioxidant potential. Earlier we reported its hypolipidemic activity obtained from ethanol extract (ET-PCF). Object of this work was to isolate ferulic acid (FA) from ET-PCF and evaluate hypolipidemic activity against high-f...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2016-394

    authors: Jain PG,Surana SJ

    更新日期:2016-10-25 00:00:00

  • Response of liver antioxidant defense system to acute and chronic physical and psychological stresses in male rats.

    abstract::The aim of this study was to evaluate the effect of acute and chronic physical and psychological stressors on the induction of oxidative stress in male rat liver. Male Wistar rats were randomly divided into 3 groups as following: control, physical and psychological stress groups. Stress was induced by communication bo...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:

    authors: Jafari M,Salehi M,Zardooz H,Rostamkhani F

    更新日期:2014-02-24 00:00:00

  • Bioethanol potentials of corn cob hydrolysed using cellulases of Aspergillus niger and Penicillium decumbens.

    abstract::Corn cob is a major component of agricultural and domestic waste in many parts of the world. It is composed mainly of cellulose which can be converted to energy in form of bioethanol as an efficient and effective means of waste management. Production of cellulolytic enzymes were induced in the fungi Aspergillus niger ...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:

    authors: Saliu BK,Sani A

    更新日期:2012-08-15 00:00:00

  • Development of sarcosine quantification in urine based on enzyme-coupled colorimetric method for prostate cancer diagnosis.

    abstract::An enzyme-coupled colorimetric assay for quantification of urinary sarcosine was developed. The proposed method is a specific reaction based on hydrogen peroxide (H2O2) formation via sarcosine oxidase (SOX). The liberated H2O2 reacts with Amplex Red in the presence of horseradish peroxidase (HRP) to produce the red-fl...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2018-145

    authors: Yamkamon V,Phakdee B,Yainoy S,Suksrichawalit T,Tatanandana T,Sangkum P,Eiamphungporn W

    更新日期:2018-05-17 00:00:00

  • Occupational stress among nurses and pre-hospital emergency staff: application of fuzzy analytic hierarchy process (FAHP) method.

    abstract::Healthcare professionals, especially nurses and pre-hospital emergency (PHE) staff, are influenced by many stressors due to their responsibility to provide comfort as well as care and treatment of patients. The aim of the present study was to identify and rank the occupational stressors in nurses and PHE staff using F...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2018-1505

    authors: Rajabi F,Jahangiri M,Molaeifar H,Honarbakhsh M,Farhadi P

    更新日期:2018-08-20 00:00:00

  • Octyl gallate induces hepatic steatosis in HepG2 cells through the regulation of SREBP-1c and PPAR-gamma gene expression.

    abstract::Octyl gallate (OG) is an antioxidant commonly used in food, although there is no definition of its acceptable daily intake. There are reports in vitro and in vivo showing that food additives and drugs can alter lipid metabolism. Lipid droplet accumulation in hepatic cells is one of the main findings in the unregulated...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2020-2214

    authors: Lima KG,Schneider Levorse VG,Rosa Garcia MC,de Souza Basso B,Pasqualotto Costa B,Antunes GL,Luft C,Haute GV,Leal Xavier L,Donadio MVF,Rodrigues de Oliveira J

    更新日期:2020-07-06 00:00:00

  • Meta-analysis of neuron specific enolase in predicting pediatric brain injury outcomes.

    abstract::A reliable biomarker has not been identified to predict the outcome of traumatic brain injury (TBI) in children. Therefore, the present systematic review and meta-analysis aimed to assess the association between neuron specific enolase (NSE) and traumatic brain injury (TBI) in children. Two independent reviewers searc...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2017-405

    authors: Nakhjavan-Shahraki B,Yousefifard M,Oraii A,Sarveazad A,Hosseini M

    更新日期:2017-07-03 00:00:00

  • Blocking of rat hippocampal Cx36 by quinine accelerates kindling epileptogenesis.

    abstract::There are abundant studies indicating that blocking gap junctions (GJs) containing connexin 36 (Cx36) inhibit seizures. However, recent evidences demonstrate proconvulsant effect of such intervention. Electrical coupling between GABAergic interneurons in CA1 region of hippocampus is mediated through Cx36 GJs. We inves...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:

    authors: Ghanbarabadi JK,Sayyah M

    更新日期:2013-03-14 00:00:00

  • Amphetamines analysis in wastewaters - method performance of solid phase extraction - higher performance liquid chromatography mass spectrometry techniques (SPE-HPLC MS/MS).

    abstract::Recently, many articles have reported different levels and distribution of amphetamine hitherto detected in biological fluids now appreciably found in aquatic environment at ng/L levels. Identification and measurement of amphetamine and its metabolites in surface and sewage waters using higher performance liquid chrom...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:

    authors: Mustapha AO,Ajao UL

    更新日期:2011-08-19 00:00:00

  • Offspring sex ratio at birth and maternal breast cancer risk: A case-control study and meta-analysis of literature.

    abstract::To investigate whether offspring sex ratio at birth (SRB) was associated with maternal breast cancer risk, the present case-control study and a meta-analysis of literature were done. A total of 389 female breast cancer patients who had at least one offspring participated in the study. From general population 356 healt...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:

    authors: Saadat M

    更新日期:2010-07-26 00:00:00

  • Evaluating the relationship of blood pressure, plasma angiotensin peptides and aldosterone with cognitive functions in patients with hypertension.

    abstract::Renin Angiotensin Aldosterone System (RAAS) plays an important role in the development of hypertension. On the other hand, hypertension is a well-known and independent risk factor for cognitive impairment. The aim of the present study was to evaluate the relationship of blood pressure control, plasma angiotensin pepti...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2016-725

    authors: Sen S,Gürel N,Ufuktepe B,Özünal ZG,Büyüklü Ç,Üresin Y

    更新日期:2017-03-10 00:00:00

  • QSAR-driven rational design of novel DNA methyltransferase 1 inhibitors.

    abstract::DNA methylation, an epigenetic modification, is mediated by DNA methyltransferases (DNMTs), a family of enzymes. Inhibitions of these enzymes are considered a promising strategy for the treatment of several diseases. In this study, a quantitative structure-activity relationship (QSAR) modeling was employed to understa...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2020-1096

    authors: Phanus-Umporn C,Prachayasittikul V,Nantasenamat C,Prachayasittikul S,Prachayasittikul V

    更新日期:2020-04-02 00:00:00

  • Clinical characteristics and outcomes of diabetics hospitalized for COVID-19 infection: a single-centered, retrospective, observational study.

    abstract::Some debates exist regarding the association of diabetes mellitus (DM) with COVID-19 infection severity and mortality. In this study, we aimed to describe and compare the clinical characteristics and outcomes of hospitalized COVID-19 patients with and without DM. In this single-centered, retrospective, observational s...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2020-2988

    authors: Mansour A,Sajjadi-Jazi SM,Kasaeian A,Khosravi B,Sorouri M,Azizi F,Rajabi Z,Motamedi F,Sirusbakht A,Eslahi M,Mojtabbavi H,Sima AR,Radmard AR,Mohajeri-Tehrani MR,Abdollahi M

    更新日期:2020-11-16 00:00:00

  • Overexpression and translocation of dynamin 2 promotes tumor aggressiveness in breast carcinomas.

    abstract::Dynamin 2 is a GTPase protein that has been implicated in cancer progression through its various roles such as endocytosis, morphogenesis, epithelial-mesenchymal transition (EMT), cellular contractions, and focal adhesion maturation. The increased expression levels of this molecule have been demonstrated with the deve...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2020-2762

    authors: Sajed R,Saeednejad Zanjani L,Rahimi M,Mansoori M,Zarnani AH,Madjd Z,Ghods R

    更新日期:2020-10-29 00:00:00

  • Chemical composition and antimicrobial activity of the essential oil from leaves of Algerian Melissa officinalis L.

    abstract::The essential oil obtained from leaves of Melissa officinalis L. (Family of Lamiaceae) growing in Algeria, was investigated for its chemical composition and in vitro antimicrobial activity. The chemical composition was determined by hydrodistillation and analyzed by GC/MS and GC-FID. Sixty-three compounds were identif...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:

    authors: Abdellatif F,Boudjella H,Zitouni A,Hassani A

    更新日期:2014-07-17 00:00:00

  • Nanoencapsulation for drug delivery.

    abstract::Nanoencapsulation of drug/small molecules in nanocarriers (NCs) is a very promising approach for development of nanomedicine. Modern drug encapsulation methods allow efficient loading of drug molecules inside the NCs thereby reducing systemic toxicity associated with drugs. Targeting of NCs can enhance the accumulatio...

    journal_title:EXCLI journal

    pub_type: 杂志文章,评审

    doi:

    authors: Kumari A,Singla R,Guliani A,Yadav SK

    更新日期:2014-03-20 00:00:00

  • Clinical pharmacology of atypical antipsychotics: an update.

    abstract::This review will concentrate on the clinical pharmacology, in particular pharmacodynamic data, related to atypical antipsychotics, clozapine, risperidone, paliperidone, olanzapine, que¬tiapine, amisulpride, ziprasidone, aripiprazole, asenapine, iloperidone, lurasidone and cariprazine. A summary of their acute pharmaco...

    journal_title:EXCLI journal

    pub_type: 杂志文章,评审

    doi:

    authors: Mauri MC,Paletta S,Maffini M,Colasanti A,Dragogna F,Di Pace C,Altamura AC

    更新日期:2014-10-13 00:00:00

  • Isolation, partial purification and evaluation of bioactive compounds from leaves of Ageratum houstonianum.

    abstract::The present study deals with the isolation and partial purification of bioactive compounds from the crude methanol extracts of the leaves of Ageratum houstonianum (Asteraceae). The quantification and the identification of compounds in the crude extract and active bands isolated by preparative TLC were accomplished usi...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:

    authors: Zeeshan M,Rizvi SM,Khan MS,Kumar A

    更新日期:2012-02-28 00:00:00

  • Short term effects of coffee components consumption on gut microbiota in patients with non-alcoholic fatty liver and diabetes: A pilot randomized placebo-controlled, clinical trial.

    abstract::The aim of this study was to determine the effects of caffeine and chlorogenic acid supplementation on gut microbiota, and metabolic disturbances in patients with NAFLD and diabetes. In this randomized, placebo-controlled, clinical trial, 26 patients with diabetes and NAFLD were randomly assigned to four groups to rec...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:10.17179/excli2019-2021

    authors: Mansour A,Mohajeri-Tehrani MR,Karimi S,Sanginabadi M,Poustchi H,Enayati S,Asgarbeik S,Nasrollahzadeh J,Hekmatdoost A

    更新日期:2020-03-02 00:00:00

  • [Not Available].

    abstract::Experimentally-induced total sleep deprivation (TSD) and chronic partial sleep restriction (CPSR) leads to the emergence of cognitive impairments. This is hypothesized to result from a consequent neuroinflammation which may also hasten the neurodegenerative processes. Neuroinflammatory markers such as tumor necrosis f...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:

    authors: Torabi-Nami M,Nasehi M,Zarrindast MR

    更新日期:2013-04-14 00:00:00

  • DNA and chromosomal damage in coronary artery disease patients.

    abstract::DNA and chromosomal damage in peripheral blood leukocytes of patients with coronary artery disease (CAD) were investigated by using the single cell gel electrophoresis assay /comet and cytokinesis- block micronucleus (CBMN) assays, respectively. The case-control study comprised patients with CAD (n = 46; average age 5...

    journal_title:EXCLI journal

    pub_type: 杂志文章

    doi:

    authors: Bhat MA,Mahajan N,Gandhi G

    更新日期:2013-10-08 00:00:00

  • Retraction: The improvement of large High-Density Lipoprotein (HDL) particle levels, and presumably HDL metabolism, depend on effects of low-carbohydrate diet and weight loss.

    abstract::[This retracts the article DOI: 10.17179/excli2015-642.]. ...

    journal_title:EXCLI journal

    pub_type: 杂志文章,撤回出版物

    doi:10.17179/excli2016-570

    authors: Finelli C,Crispino P,Gioia S,La Sala N,D'amico L,La Grotta M,Miro O,Colarusso D

    更新日期:2016-09-19 00:00:00