Regulatory small RNAs from the 3' regions of bacterial mRNAs.

Abstract:

:Most studies of small regulatory RNAs in bacteria have focussed on conserved transcripts in intergenic regions. However, several recent developments including single-nucleotide resolution transcriptome profiling by RNA-seq and increased knowledge of the cellular targets of the RNA chaperone Hfq suggest that the bacterial world of functional small RNAs is more diverse. One emerging class are small RNAs that are identical to the 3' regions of known mRNAs, but are produced either by transcription from internal promoters or by mRNA processing. Using several recently discovered examples of such sRNAs, we discuss their biogenesis and modes of action, and illustrate how they can facilitate mRNA crosstalk in various physiological processes.

journal_name

Curr Opin Microbiol

authors

Miyakoshi M,Chao Y,Vogel J

doi

10.1016/j.mib.2015.01.013

subject

Has Abstract

pub_date

2015-04-01 00:00:00

pages

132-9

eissn

1369-5274

issn

1879-0364

pii

S1369-5274(15)00022-3

journal_volume

24

pub_type

杂志文章,评审
  • Anaplasma phagocytophilum and Ehrlichia chaffeensis type IV secretion and Ank proteins.

    abstract::The obligatory intracellular bacterial pathogens Anaplasma and Ehrlichia infect leukocytes by hijacking host-cell components and processes. The type IV secretion system is up-regulated during infection. Among type IV secretion candidate substrates, an ankyrin repeat protein of Anaplasma phagocytophilum, AnkA, is deliv...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2009.12.008

    authors: Rikihisa Y,Lin M

    更新日期:2010-02-01 00:00:00

  • Modulation of natural killer cell activity by viruses.

    abstract::Since their discovery, our understanding of NK cells has evolved from branding them marginal innate immunity cells to key players in anti-viral and anti-tumor immunity. Importance of NK cells in control of various viral infections is perhaps best illustrated by the existence of plethora of viral mechanisms aimed to mo...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2010.05.011

    authors: Lisnić VJ,Krmpotić A,Jonjić S

    更新日期:2010-08-01 00:00:00

  • Functional requirements of cellular differentiation: lessons from Bacillus subtilis.

    abstract::Successful execution of differentiation programs requires cells to assess multitudes of internal and external cues and respond with appropriate gene expression programs. Here, we review how Bacillus subtilis sporulation network deals with these tasks focusing on the lessons generalizable to other systems. With feedfor...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2016.07.011

    authors: Narula J,Fujita M,Igoshin OA

    更新日期:2016-12-01 00:00:00

  • Advances in understanding E. coli cell fission.

    abstract::Much of what we know about cytokinesis in bacteria has come from studies with Escherichia coli, and efforts to comprehensively understand this fundamental process in this organism continue to intensify. Major recent advances include in vitro assembly of a membrane-tethered version of FtsZ into contractile rings in lip...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2010.09.015

    authors: de Boer PA

    更新日期:2010-12-01 00:00:00

  • Bacterial morphogenesis: learning how cells make cells.

    abstract::Bacteria furnish tractable models for complex biological processes, and morphogenesis is now taking its turn. We can already explain in general terms how such elementary forms as rods and cocci are produced, and the shapes of several individual organisms are coming into focus. In most bacteria shape is maintained by t...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2007.07.003

    authors: Harold FM

    更新日期:2007-12-01 00:00:00

  • Membrane trafficking and remodeling at the host-parasite interface.

    abstract::Membrane shape is functionally linked with many cellular processes. The limiting membrane of vacuoles containing Toxoplasma gondii and Plasmodium apicomplexan parasites lies at the host-parasite interface. This membrane comprises intra-vacuolar and extra-vacuolar tubulo-vesicular deformations, which influence host-par...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2017.11.013

    authors: Santi-Rocca J,Blanchard N

    更新日期:2017-12-01 00:00:00

  • An evolutionary perspective on the broad antiviral specificity of MxA.

    abstract::Germ line encoded antiviral defenses in vertebrate cells tend to be either broadly acting factors that exploit general features of viral replication or effectors with strong pathogen preference by virtue of specific recognition of viral proteins. The Mx GTPases, however, are atypical since they have broad antiviral ac...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2013.04.005

    authors: Mitchell PS,Emerman M,Malik HS

    更新日期:2013-08-01 00:00:00

  • Innate immune evasion strategies of DNA and RNA viruses.

    abstract::Upon infection, both DNA and RNA viruses can be sensed by pattern recognition receptors (PRRs) in the cytoplasm or the nucleus to activate antiviral innate immunity. Sensing of viral products leads to the activation of a signaling cascade that ultimately results in transcriptional activation of type I and III interfer...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2016.05.015

    authors: Beachboard DC,Horner SM

    更新日期:2016-08-01 00:00:00

  • Iron homeostasis--Achilles' heel of Aspergillus fumigatus?

    abstract::The opportunistic fungal pathogen Aspergillus fumigatus adapts to iron limitation by upregulation of iron uptake mechanisms including siderophore biosynthesis and downregulation of iron-consuming pathways to spare iron. These metabolic changes depend mainly on the transcription factor HapX. Consistent with the crucial...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2011.06.002

    authors: Schrettl M,Haas H

    更新日期:2011-08-01 00:00:00

  • Antifungals: what's in the pipeline.

    abstract::The therapeutic landscape for mycotic infections is shifting. New generation azoles that are active against clinically relevant, drug-resistant fungal pathogens have improved bioavailability, half-lives and safety profiles. Acylated cyclic peptide inhibitors of beta(1,3)glucan synthesis with origins as fungal metaboli...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5274(00)00248-4

    authors: Tkacz JS,DiDomenico B

    更新日期:2001-10-01 00:00:00

  • Genomic RNAi screening in Drosophila S2 cells: what have we learned about host-pathogen interactions?

    abstract::The détente between pathogen and host has been of keen interest to researchers in spite of being exceedingly difficult to probe. Recently, new RNA interference (RNAi) technologies, in particular in Drosophila tissue culture cells, have made it possible to interrogate the genetics of host organisms rapidly, with nearly...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2008.05.007

    authors: Cherry S

    更新日期:2008-06-01 00:00:00

  • Genomics of parasitic and symbiotic fungi.

    abstract::Complete and partial genome sequence information is underway in several parasitic and symbiotic fungi that infect humans, other animals and plants. Comparative analyses of these sequences will provide new insights into the genomic plasticity and evolution of parasitism and mutualism in fungi. ...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5274(02)00355-7

    authors: Tunlid A,Talbot NJ

    更新日期:2002-10-01 00:00:00

  • Posttranslational modifications and assembly of septin heteropolymers and higher-order structures.

    abstract::Septins are cytoskeletal elements that contain a highly conserved canonical G domain flanked by more divergent N- and C-termini. Septin monomers form heteropolymers that in turn associate into a variety of higher-order structures. SUMOylation, acetylation and phosphorylation of septins have all been reported; however,...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2012.09.007

    authors: Hernández-Rodríguez Y,Momany M

    更新日期:2012-12-01 00:00:00

  • The gut, the bad and the harmless: Candida albicans as a commensal and opportunistic pathogen in the intestine.

    abstract::Candida albicans is a regular member of the intestinal microbiota in the majority of the human population. This underscores C. albicans' adaptation to life in the intestine without inducing competitive interactions with other microbes, or immune responses detrimental to its survival. However, specific conditions such ...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2020.05.006

    authors: Kumamoto CA,Gresnigt MS,Hube B

    更新日期:2020-08-01 00:00:00

  • The coming of age of niche vaccines? Effect of vaccines on resistance profiles in Streptococcus pneumoniae.

    abstract::Pneumococcal conjugate vaccine is not only effective against invasive and non-invasive disease in all ages but also has a significant impact on antibiotic-resistant infections since a number of resistant serotypes are targeted by the vaccine. Surveillance studies in the post-licensure years have shown an increase in n...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2007.08.008

    authors: McGee L

    更新日期:2007-10-01 00:00:00

  • HIV-host interactions: vital to the virus and key to its inhibition.

    abstract::Much progress has been made in recent years in the investigation of the interplay between HIV-1 and its host cells. Most of these interactions are complex and have not yet been fully unraveled. Nevertheless, current knowledge on the molecular interactions between HIV and host-cell factors has substantially broadened o...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2004.06.002

    authors: Trkola A

    更新日期:2004-08-01 00:00:00

  • Control of bacterial colonization in the glands and crypts.

    abstract::The epithelial cell layer of the major organs of the mammalian gastrointestinal (GI) tract is extensively invaginated into thousands of gland and crypt structures. These are lined by distinct sets of epithelial cells and may comprise discrete niches. The host maximizes the distance between the epithelial cell layer an...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2018.11.004

    authors: Yang C,Ottemann KM

    更新日期:2019-02-01 00:00:00

  • Mycobacterium tuberculosis in the post-genomic age.

    abstract::Since the publication of the complete genome sequence of Mycobacterium tuberculosis in 1998, there has been a marked intensification and diversification of activities in the field of tuberculosis research. Among the areas that have advanced spectacularly are comparative genomics, functional genomics-notably the study ...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5274(00)00160-0

    authors: Domenech P,Barry CE 3rd,Cole ST

    更新日期:2001-02-01 00:00:00

  • Roles of cysteine proteinases of trypanosomes and Leishmania in host-parasite interactions.

    abstract::Trypanosomes and Leishmania contain an abundance of stage-regulated cysteine proteinases encoded by several gene families. Analysis of parasites rendered defective in cysteine proteinase function, either through genetic manipulation or through the use of specific inhibitors, has revealed roles for the enzymes in paras...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5274(98)80065-9

    authors: Mottram JC,Brooks DR,Coombs GH

    更新日期:1998-08-01 00:00:00

  • Mechanisms of biofilm stimulation by subinhibitory concentrations of antimicrobials.

    abstract::Biofilms are a typical mode of growth for most microorganisms and provide them with a variety of survival benefits. Biofilms can pose medical and industrial challenges due to their increased tolerance of antimicrobials and disinfectants. Exposure of bacteria to subinhibitory concentrations of those compounds can furth...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2018.07.006

    authors: Ranieri MR,Whitchurch CB,Burrows LL

    更新日期:2018-10-01 00:00:00

  • Reverse vaccinology.

    abstract::Biochemical, serological and microbiological methods have been used to dissect pathogens and identify the components useful for vaccine development. Although successful in many cases, this approach is time-consuming and fails when the pathogens cannot be cultivated in vitro, or when the most abundant antigens are vari...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5274(00)00119-3

    authors: Rappuoli R

    更新日期:2000-10-01 00:00:00

  • From motility to virulence: Sensing and responding to environmental signals in Vibrio cholerae.

    abstract::Sensing its changing environment is key for Vibrio cholerae when making the transition from an aquatic lifestyle to one more suited to a human host. An inverse correlation between motility and virulence gene expression has been reported, with the NADH : ubiquinone oxidoreductase system which powers motility by generat...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5274(03)00032-8

    authors: Krukonis ES,DiRita VJ

    更新日期:2003-04-01 00:00:00

  • Cytoskeleton and motor proteins in filamentous fungi.

    abstract::In filamentous fungi, the actin cytoskeleton is required for polarity establishment and maintenance at hyphal tips and for formation of a contractile ring at sites of septation. Recently, formins have been identified as Arp (actin-related protein) 2/3-independent nucleators of actin polymerization, and filamentous fun...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2003.10.009

    authors: Xiang X,Plamann M

    更新日期:2003-12-01 00:00:00

  • Cell polarity, intercellular signalling and morphogenetic cell movements in Myxococcus xanthus.

    abstract::In Myxococcus xanthus morphogenetic cell movements constitute the basis for the formation of spreading vegetative colonies and fruiting bodies in starving cells. M. xanthus cells move by gliding and gliding motility depends on two polarly localized engines, type IV pili pull cells forward, and slime extruding nozzle-l...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2004.10.004

    authors: Søgaard-Andersen L

    更新日期:2004-12-01 00:00:00

  • Yersinia versus host immunity: how a pathogen evades or triggers a protective response.

    abstract::The human pathogenic Yersinia species cause diseases that represent a significant source of morbidity and mortality. Despite this, specific mechanisms underlying Yersinia pathogenesis and protective host responses remain poorly understood. Recent studies have shown that Yersinia disrupt cell death pathways, perturb in...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2015.11.001

    authors: Chung LK,Bliska JB

    更新日期:2016-02-01 00:00:00

  • Control of transcription by nucleoid proteins.

    abstract::Nucleoid proteins are a group of abundant DNA binding proteins that modulate the structure of the bacterial chromosome. They have been recruited as specific negative and positive regulators of gene transcription and their fluctuating patterns of expression are often exploited to impart an additional level of control w...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章

    doi:10.1016/s1369-5274(00)00181-8

    authors: McLeod SM,Johnson RC

    更新日期:2001-04-01 00:00:00

  • Cyclic (di)nucleotides: the common language shared by microbe and host.

    abstract::Fluency in a common language allows individuals to convey information and carry out complex activities that otherwise would be difficult or even impossible without the benefit of shared communication. Cyclic (di)nucleotides have recently been recognized as such an accessible language understood by both microbe and the...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2015.12.005

    authors: Gao J,Tao J,Liang W,Jiang Z

    更新日期:2016-04-01 00:00:00

  • Imaging bacteria inside their host by cryo-focused ion beam milling and electron cryotomography.

    abstract::Bacterium-host interactions are important for diverse ecological settings including pathogenicity and symbiosis. Electron cryotomography is a powerful method for studying the macromolecular complexes that mediate such interactions in situ. The main limitation of electron cryotomography is its restriction to relatively...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2017.12.006

    authors: Medeiros JM,Böck D,Pilhofer M

    更新日期:2018-06-01 00:00:00

  • Intracellular protozoan parasites: living probes of the host cell surface molecular repertoire.

    abstract::Intracellular protozoans co-evolved with their mammalian host cells a range of strategies to cope with the composite and dynamic cell surface features they encounter during migration and infection. Therefore, these single-celled eukaryotic parasites represent a fascinating source of living probes for precisely capturi...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2019.06.007

    authors: Pavlou G,Milon G,Tardieux I

    更新日期:2019-12-01 00:00:00

  • Cell division is dispensable but not irrelevant in Streptomyces.

    abstract::In part, members of the genus Streptomyces have been studied because they produce many important secondary metabolites with antibiotic activity and for the interest in their relatively elaborate life cycle. These sporulating filamentous bacteria are remarkably synchronous for division and genome segregation in special...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2009.10.004

    authors: McCormick JR

    更新日期:2009-12-01 00:00:00