Dependency of cellular decision making in physiology and influence of preceding growth conditions.

Abstract:

:Events from the past growth conditions influence the course of physiology, and it gets reflected in the present cell behaviour. During this process, cells acquire a metabolic option which carries signature of the past, and it dictates the performance in the present situation. Study uses Escherichia coli as a sample organism wherein three scenarios of preceding growth conditions were created with varying nutritional status and pre-treatment strategies. This exercise leads to different seed cultures, which were subjected to growth using the four different substrates. The different seed culture behaviours were analysed by observing the respirometric rate of the seed culture and were followed by growth dynamics with different substrates. These two data sets were independently analysed by three-way ANOVA to arrive at strategic coupling of programming conditions to relate the available (respirometric rates) and executable physiology (growth kinetics).

authors

Puranik S,Purohit HJ

doi

10.1007/s12010-014-1167-9

subject

Has Abstract

pub_date

2014-11-01 00:00:00

pages

1982-97

issue

5

eissn

0273-2289

issn

1559-0291

journal_volume

174

pub_type

杂志文章
  • Production and characterization of a milk-clotting protease produced in submerged fermentation by the thermophilic fungus Thermomucor indicae-seudaticae N31.

    abstract::Proteases are some of the most important industrial enzymes, and one of their main applications is for the production of cheese in the dairy industry. Due to a shortage of animal rennet, microbial coagulant proteases are being sought. In this work, the production of microbial rennet from Thermomucor indicae-seudaticae...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-013-0655-7

    authors: Silva BL,Geraldes FM,Murari CS,Gomes E,Da-Silva R

    更新日期:2014-02-01 00:00:00

  • Purification, characterization, and preliminary X-ray diffraction analysis of a lactose-specific lectin from Cymbosema roseum seeds.

    abstract::The unique carbohydrate-binding property of lectins makes them invaluable tools in biomedical research. Here, we report the purification, partial primary structure, carbohydrate affinity characterization, crystallization, and preliminary X-ray diffraction analysis of a lactose-specific lectin from Cymbosema roseum see...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-008-8334-9

    authors: Rocha BA,Moreno FB,Delatorre P,Souza EP,Marinho ES,Benevides RG,Rustiguel JK,Souza LA,Nagano CS,Debray H,Sampaio AH,de Azevedo WF Jr,Cavada BS

    更新日期:2009-03-01 00:00:00

  • Simultaneous enzymatic synthesis of gluconic acid and sorbitol: production, purification, and application of glucose-fructose oxidoreductase and gluconolactonase.

    abstract::With regard to the enzymatic synthesis of sorbitol and gluconic acid, a screening was carried out to identify promising producers of glucose-fructose oxidoreductase (GFOR) and gluconolactonase (GL). Zymomonas mobilis DSM 473 and Rhodotorula rubra DSM 70403 have been selected for the synthesis of GFOR and GL, respectiv...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/BF02920423

    authors: Nidetzky B,Fürlinger M,Gollhofer D,Haug I,Haltrich D,Kulbe KD

    更新日期:1997-04-01 00:00:00

  • Biotransformation of Isoeugenol into Vanillin Using Immobilized Recombinant Cells Containing Isoeugenol Monooxygenase Active Aggregates.

    abstract::For efficiently enhancing the activity of isoeugenol monooxygenase, a whole cell overproducing active aggregate IEM720-18A was successfully fabricated via the fusion of amphiphilic short peptide 18A (EWLKAFYEKVLEKLKELF) and isoeugenol monooxygenase and then efficiently expressed in E. coli BL21 (DE3). Such resulting b...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-019-02996-1

    authors: Zhao L,Jiang Y,Fang H,Zhang H,Cheng S,Rajoka MSR,Wu Y

    更新日期:2019-10-01 00:00:00

  • RAPD and ISSR Marker-Based Comparative Evaluation of Genetic Diversity Among Indian Germplasms of Euryale ferox: an Aquatic Food Plant.

    abstract::Euryale ferox Salisbury is an important aquatic food plant cultivated largely in eastern India. E. ferox is a monotypic genus, and breeding programmes have mostly relied on the variability present in the primary gene pool. Knowledge of the genetic structure of the population is limited, and there are very few reports ...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-016-2171-z

    authors: Kumar H,Priya P,Singh N,Kumar M,Choudhary BK,Kumar L,Singh IS,Kumar N

    更新日期:2016-12-01 00:00:00

  • Ethanolic fermentation of pentoses in lignocellulose hydrolysates.

    abstract::In the fermentation of lignocellulose hydrolysates to ethanol, two major problems are encountered: the fermentation of the pentose sugar xylose, and the presence of microbial inhibitors. Xylose can be directly fermented with yeasts, such as Pachysolen tannophilus, Candida shehatae, and Pichia stipis, or by isomerizati...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/BF02922595

    authors: Hahn-Hägerdal B,Lindén T,Senac T,Skoog K

    更新日期:1991-04-01 00:00:00

  • Comparison of One-Stage Batch and Fed-Batch Enzymatic Hydrolysis of Pretreated Hardwood for the Production of Biosugar.

    abstract::Fed-batch method has shown a great promise in debottlenecking the high-solid enzymatic hydrolysis for the commercialization of cellulosic biosugar conversion for biofuel/biochemical production. To further improve enzymatic hydrolysis efficiency at high solid loading, fed-batch methods of green liquor-pretreated hardwo...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-017-2633-y

    authors: He L,Han Q,Jameel H,Chang HM,Phillips R,Wang Z

    更新日期:2018-04-01 00:00:00

  • Callus induction and plant regeneration from different explants of Actinidia deliciosa.

    abstract::In this study, an efficient procedure was developed for callus induction and regeneration of kiwifruit (Actinidia deliciosa) using different organs of shoots developed under in vitro conditions. Effects of explants source and media (M(1), 1.0 mg l(-1) BA + 2.0 mg l(-1) 2,4-D-M(2), 1.0 mg l(-1) NAA + 2.0 mg l(-1) 2,4-D...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-008-8401-2

    authors: Akbaş F,Işikalan C,Namli S

    更新日期:2009-08-01 00:00:00

  • Isolation and characterization of an atypical LEA protein coding cDNA and its promoter from drought-tolerant plant Prosopis juliflora.

    abstract::Plant growth and productivity are adversely affected by various abiotic and biotic stress factors. Despite the wealth of information on abiotic stress and stress tolerance in plants, many aspects still remain unclear. Prosopis juliflora is a hardy plant reported to be tolerant to drought, salinity, extremes of soil pH...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-008-8398-6

    authors: George S,Usha B,Parida A

    更新日期:2009-05-01 00:00:00

  • Detoxifying CO2 capture reclaimer waste by anaerobic digestion.

    abstract::The decrease in toxicity of carbon capture reclaimer monoethanolamine (MEA) waste (MEAw) during anaerobic degradation of such waste together with easily degradable organics was investigated. Samples were collected from a bioreactor at steady state with 86 % organic chemical oxygen demand removal at room temperature, w...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-013-0587-2

    authors: Wang S,Hovland J,Brooks S,Bakke R

    更新日期:2014-01-01 00:00:00

  • Isolation and characterization of a novel feather-degrading bacterial strain.

    abstract::Feather waste, generated in large quantities as a byproduct of commercial poultry processing, is almost pure keratin, which is not easily degradable by common proteolytic enzymes. Feather-degrading bacteria were isolated from a Brazilian poultry industrial waste. Among these isolates, a strain identified as kr2 was th...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1385/abab:87:1:17

    authors: Sangali S,Brandelli A

    更新日期:2000-04-01 00:00:00

  • Bacteriocin release protein-mediated secretory expression of recombinant chalcone synthase in Escherichia coli.

    abstract::Flavonoids are secondary metabolites synthesized by plants shown to exhibit health benefits such as anti-inflammatory, antioxidant, and anti-tumor effects. Thus, due to the importance of this compound, several enzymes involved in the flavonoid pathway have been cloned and characterized in Escherichia coli. However, th...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-011-9292-1

    authors: Zakaria II,Rahman RN,Salleh AB,Basri M

    更新日期:2011-09-01 00:00:00

  • A novel low molecular weight endo-xylanase from Streptomyces sp. CS628 cultivated in wheat bran.

    abstract::An extracellular low molecular weight xylanase (Xyn628) from Streptomyces sp. CS628 was isolated from Korean soil sample, produced in wheat bran medium, purified, and biochemically characterized. Xyn628 was purified 4.8-fold with a 33.78 % yield using Sepharose CL-6B column chromatography. The purified xylanase was ~1...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-014-0916-0

    authors: Rahman MA,Choi YH,Pradeep GC,Choi YS,Choi EJ,Cho SS,Yoo JC

    更新日期:2014-07-01 00:00:00

  • Combined use of H2SO4 and SO2 impregnation for steam pretreatment of spruce in ethanol production.

    abstract::Fuel ethanol can be produced from softwood through hydrolysis in an enzymatic process. Prior to enzymatic hydrolysis of the softwood, pretreatment is necessary. In this study, two-step steam pretreatment employing dilute H2SO4 impregnation in the first step and SO2 impregnation in the second step, to improve the overa...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1385/abab:105:1-3:127

    authors: Söderström J,Pilcher L,Galbe M,Zacchi G

    更新日期:2003-04-01 00:00:00

  • Hydrolysis and transglycosylation activity of a thermostable recombinant beta-glycosidase from Sulfolobus acidocaldarius.

    abstract::We expressed a putative beta-galactosidase from Sulfolobus acidocaldarius in Escherichia coli and purified the recombinant enzyme using heat treatment and Hi-Trap ion-exchange chromatography. The resultant protein gave a single 57-kDa band by SDS-PAGE and had a specific activity of 58 U/mg. The native enzyme existed a...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-009-8705-x

    authors: Park AR,Kim HJ,Lee JK,Oh DK

    更新日期:2010-04-01 00:00:00

  • Evaluation of a Hypocrea jecorina enzyme preparation for hydrolysis of Tifton 85 bermudagrass.

    abstract::Tifton 85 bermudagrass, developed at the ARS-USDA in Tifton, GA, is grown on over ten million acres in the USA for hay and forage. Of the bermudagrass cultivars, Tifton 85 exhibits improved digestibility because the ratio of ether- to ester-linked phenolic acids has been lowered using traditional plant breeding techni...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-007-8129-4

    authors: Ximenes EA,Brandon SK,Doran-Peterson J

    更新日期:2008-03-01 00:00:00

  • ACE-Inhibitory and Antioxidant Activities of Peptide Fragments Obtained from Tomato Processing By-Products Fermented Using Bacillus subtilis: Effect of Amino Acid Composition and Peptides Molecular Mass Distribution.

    abstract::The effects of amino acid composition and peptide molecular mass on ACE-inhibitory and antioxidant activities of protein fragments obtained from tomato waste fermented using Bacillus subtilis were evaluated. The addition of B. subtilis increased the relative amounts of aromatic and positively-charged amino acids which...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-016-2198-1

    authors: Moayedi A,Mora L,Aristoy MC,Hashemi M,Safari M,Toldrá F

    更新日期:2017-01-01 00:00:00

  • Proteomics and detection of uromodulin in first-time renal calculi patients and recurrent renal calculi patients.

    abstract::Renal calculi disease or known as kidney stone disease is the most common urological disorder in both men and women, although it is more prevalent in men. The lifetime chance for an individual to develop renal calculi is approximately 10% whereas the risk of recurrence in a 10-year period is 74%. Therefore, a diagnost...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-008-8503-x

    authors: Wai-Hoe L,Wing-Seng L,Ismail Z,Lay-Harn G

    更新日期:2009-10-01 00:00:00

  • Isolation and functional characterization of a novel seed-specific promoter region from peanut.

    abstract::The importance of using tissue-specific promoters in the genetic transformation of plants has been emphasized increasingly. Here, we report the isolation of a novel seed-specific promoter region from peanut and its validation in Arabidopsis and tobacco seeds. The reported promoter region referred to as groundnut seed ...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-013-0482-x

    authors: Sunkara S,Bhatnagar-Mathur P,Sharma KK

    更新日期:2014-01-01 00:00:00

  • Production of microbial cellulose by a bacterium isolated from fruit.

    abstract::This study presents the production of bacterial cellulose (BC) by a bacterium isolated from a rotten fruit and its process optimization. Here, isolation and screening of potent cellulose producers were carried out from different natural sources, viz., soil, rotten fruits, and vegetables and vinegar. A total of 200 bac...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-012-9595-x

    authors: Jahan F,Kumar V,Rawat G,Saxena RK

    更新日期:2012-07-01 00:00:00

  • Dehydration of ethanol by facile synthesized glucose-based silica.

    abstract::Bioethanol is considered a potential liquid fuel that can be produced from biomass by fermentation and distillation. Although most of the water is removed by distillation, the purity of ethanol is limited to 95-96 % due to the formation of a low-boiling point, water-ethanol azeotrope. To improve the use of ethanol as ...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-012-0076-z

    authors: Tang B,Bi W,Row KH

    更新日期:2013-02-01 00:00:00

  • A Novel Cellobiohydrolase I (CBHI) from Penicillium digitatum: Production, Purification, and Characterization.

    abstract::A new cellulase producer strain of Penicillium digitatum (RV 06) was previously obtained from rotten maize grains. This work aim was to optimize the production and characterize this microorganism produced cellulase. A CMCase maximum production (1.6 U/mL) was obtained in stationary liquid culture, with an initial pH of...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-020-03307-9

    authors: Dos Santos FC,de Oliveira MAS,Seixas FAV,Barbosa-Tessmann IP

    更新日期:2020-09-01 00:00:00

  • Lactobacillus plantarum amylase acting on crude starch granules. Native isoforms and activity changes after limited proteolysis.

    abstract::The microheterogeneous native amylolytic complex secreted by the isolate A6 of Lactobacillus plantarum revealed a selective enzyme specificity loss when submitted to a limited proteolysis under a suboptimum pH condition. A clear electrophoretic profile change toward just one shorter, more acidic, and equally active po...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1385/abab:84-86:1-9:721

    authors: Florêncio JA,Eiras-Stofella DR,Soccol CR,Raimbault M,Guyot JP,Fontana JD

    更新日期:2000-04-01 00:00:00

  • An Assessment of HbA1c in Diabetes Mellitus and Pre-diabetes Diagnosis: a Multi-centered Data Mining Study.

    abstract::HbA1c test has been widely used to evaluate glycemic control in patients with diabetes. However, there are controversial results regarding the value of HbA1c in the diagnosis of diabetes mellitus (DM). The present study investigates the diagnostic effectiveness of HbA1c in a large patient group. The oral glucose toler...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章,多中心研究

    doi:10.1007/s12010-019-03080-4

    authors: Serdar MA,Serteser M,Ucal Y,Karpuzoglu HF,Aksungar FB,Coskun A,Kilercik M,Ünsal İ,Özpınar A

    更新日期:2020-01-01 00:00:00

  • Synthesis of pure meso-2,3-butanediol from crude glycerol using an engineered metabolic pathway in Escherichia coli.

    abstract::meso-2,3-Butanediol (meso-2,3-BDO) is essential for the synthesis of various economically valuable biosynthetic products; however, the production of meso-2,3-BDO from expensive carbon sources is an obstacle for industrial applications. In this study, genes involved in the synthesis of 2,3-BDO in Klebsiella pneumoniae ...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-012-9593-z

    authors: Lee S,Kim B,Park K,Um Y,Lee J

    更新日期:2012-04-01 00:00:00

  • Effect of Initial Temperature Treatment on Phytochemicals and Antioxidant Activity of Azadirachta indica A. Juss.

    abstract::The present study was undertaken to evaluate the effect of initial temperature treatment on phytochemical and antioxidant potential of commercially important plant Azadirachta indica A. Juss. The leaves were differentially treated after harvest at temperatures 4, -20, and 110 °C and at room temperature, separately. It...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-015-1890-x

    authors: Vats S

    更新日期:2016-02-01 00:00:00

  • Effect of Ethanol Accumulation on Porcine Interferon-α Production by Pichia pastoris and Activities of Key Enzymes in Carbon Metabolism.

    abstract::In production of porcine interferon α (pIFN-α) by Pichia pastoris, improper glycerol feeding strategy leads to ethanol accumulation in the last stage of growth phase. In the present study, taking two runs with low ethanol accumulation under 2 g/L as control group, effects of long-term (>4 h) and instantaneous high eth...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-015-1693-0

    authors: Ding J,Gao M,Hou G,Liang K

    更新日期:2015-08-01 00:00:00

  • Gelatin-immobilised poly(hydroxyethyl methacrylate) cryogel for affinity purification of fibronectin.

    abstract::In this work, fibronectin purification from human plasma with the gelatin-immobilised poly(hydroxyethyl methacrylate) (PHEMA) cryogel has been evaluated. The PHEMA cryogel was prepared by cryo-polymerisation which proceeds in an aqueous solution of monomer frozen inside a plastic syringe. The PHEMA cryogel contained i...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-013-0352-6

    authors: Perçin I,Aksöz E,Denizli A

    更新日期:2013-09-01 00:00:00

  • Polykaryon formation using a swollen conidium of Trichoderma reesei.

    abstract::The cellulolytic fungus, Trichoderma has oval and mononucleate conidia. When these conidia are incubated in a liquid medium, they begin to swell and their shape becomes spherical followed by an increase in inner space. In such swollen conidia, it is possible to produce a larger autopolyploid nucleus using a mitotic ar...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Toyama H,Yano M,Hotta T

    更新日期:2004-04-01 00:00:00

  • New model for polymerization of oligomeric alcohol dehydrogenases into nanoaggregates.

    abstract::Polymerization and self-assembly of proteins into nanoaggregates of different sizes and morphologies (nanoensembles or nanofilaments) is a phenomenon that involved problems in various neurodegenerative diseases (medicine) and enzyme instability/inactivity (biotechnology). Thermal polymerization of horse liver alcohol ...

    journal_title:Applied biochemistry and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s12010-009-8646-4

    authors: Barzegar A,Moosavi-Movahedi AA,Kyani A,Goliaei B,Ahmadian S,Sheibani N

    更新日期:2010-02-01 00:00:00