Do the same genes underlie parallel phenotypic divergence in different Littorina saxatilis populations?

Abstract:

:Parallel patterns of adaptive divergence and speciation are cited as powerful evidence for the role of selection driving these processes. However, it is often not clear whether parallel phenotypic divergence is underlain by parallel genetic changes. Here, we asked about the genetic basis of parallel divergence in the marine snail Littorina saxatilis, which has repeatedly evolved coexisting ecotypes adapted to either crab predation or wave action. We sequenced the transcriptome of snails of both ecotypes from three distant geographical locations (Spain, Sweden and United Kingdom) and mapped the reads to the L. saxatilis reference genome. We identified genomic regions potentially under divergent selection between ecotypes within each country, using an outlier approach based on F(ST) values calculated per locus. In line with previous studies indicating that gene reuse is generally common, we expected to find extensive sharing of outlier loci due to recent shared ancestry and gene flow between at least two of the locations in our study system. Contrary to our expectations, we found that most outliers were country specific, suggesting that much of the genetic basis of divergence is not shared among locations. However, we did find that more outliers were shared than expected by chance and that differentiation of shared outliers is often generated by the same SNPs. We discuss two mechanisms potentially explaining the limited amount of sharing we observed. First, a polygenic basis of divergent traits might allow for multiple distinct molecular mechanisms generating the same phenotypic patterns. Second, additional, location-specific axes of selection that we did not focus on in this study may produce distinct patterns of genetic divergence within each site.

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

Westram AM,Galindo J,Alm Rosenblad M,Grahame JW,Panova M,Butlin RK

doi

10.1111/mec.12883

subject

Has Abstract

pub_date

2014-09-01 00:00:00

pages

4603-16

issue

18

eissn

0962-1083

issn

1365-294X

journal_volume

23

pub_type

杂志文章
  • Current geography masks dynamic history of gene flow during speciation in northern Australian birds.

    abstract::Genome divergence is greatly influenced by gene flow during early stages of speciation. As populations differentiate, geographic barriers can constrain gene flow and so affect the dynamics of divergence and speciation. Current geography, specifically disjunction and continuity of ranges, is often used to predict the h...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14978

    authors: Peñalba JV,Joseph L,Moritz C

    更新日期:2019-02-01 00:00:00

  • Spawning success in Atlantic salmon (Salmo salar L.): a long-term DNA profiling-based study conducted in a natural stream.

    abstract::Spawning success of Atlantic salmon (Salmo salar L.) was investigated, under near-natural conditions, in the Girnock Burn, an 8-km long tributary of the River Dee in Scotland. Employing minisatellite-based DNA profiling, mating outcomes were resolved over three spawning seasons by assigning parentage to progeny sample...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2001.01254.x

    authors: Taggart JB,McLaren IS,Hay DW,Webb JH,Youngson AF

    更新日期:2001-04-01 00:00:00

  • Connectivity, small islands and large distances: the Cellana strigilis limpet complex in the Southern Ocean.

    abstract::The Southern Ocean contains some of the most isolated islands on Earth, and fundamental questions remain regarding their colonization and the connectivity of their coastal biotas. Here, we conduct a genetic investigation into the Cellana strigilis (limpet) complex that was originally classified based on morphological ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05185.x

    authors: Reisser CM,Wood AR,Bell JJ,Gardner JP

    更新日期:2011-08-01 00:00:00

  • Hybridization between pollination syndromes as an ecological and evolutionary resource.

    abstract::In plants, pollination syndromes (the correlated presence of many features of relevance to pollination mode, for instance pollination by a particular animal clade) are a striking feature of plant biodiversity, providing great floral phenotypic diversity (Fenster et al. ). Adaptation to a particular animal pollinator p...

    journal_title:Molecular ecology

    pub_type: 评论,新闻

    doi:10.1111/mec.13903

    authors: Cronk Q,Yang JY

    更新日期:2016-12-01 00:00:00

  • Chloroplast evidence for geographic stasis of the Australian bird-dispersed shrub Tasmannia lanceolata (Winteraceae).

    abstract::Few chloroplast-based genetic studies have been undertaken for plants of mesic temperate forests in the southern hemisphere and fossil-based models have provided evidence of vegetation history only at the broadest scales in this region. This study investigates the chloroplast DNA phylogeography of Tasmannia lanceolata...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04725.x

    authors: Worth JR,Jordan GJ,Marthick JR,McKinnon GE,Vaillancourt RE

    更新日期:2010-07-01 00:00:00

  • The use of nuclear and mitochondrial single nucleotide polymorphisms to identify cryptic species.

    abstract::There is growing interest in the use of single nucleotide polymorphisms for evolutionary and population genetics. We tested the efficacy of one of the available single nucleotide polymorphism techniques, single-base extension, in distinguishing four cryptic species of Microtus. Sequence data were available for these s...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01874.x

    authors: Belfiore NM,Hoffman FG,Baker RJ,Dewoody JA

    更新日期:2003-07-01 00:00:00

  • Phylogeography, hybridization and Pleistocene refugia of the kob antelope (Kobus kob).

    abstract::Mitochondrial DNA control region sequences and seven microsatellites were used to estimate the genetic structuring, evolutionary history and historic migration patterns of the kob antelope (Kobus kob). Ten populations were analysed, representing the three recognized K. kob subspecies: K. k. kob in west Africa, K. k. t...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2007.03382.x

    authors: Lorenzen ED,De Neergaard R,Arctander P,Siegismund HR

    更新日期:2007-08-01 00:00:00

  • Spatial scale affects landscape genetic analysis of a wetland grasshopper.

    abstract::Most landscape genetic studies assess the impact of landscape elements on species' dispersal and gene flow. Many of these studies perform their analysis on all possible population pairs in a study area and do not explicitly consider the effects of spatial scale and population network topology on their results. Here, w...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12265

    authors: Keller D,Holderegger R,van Strien MJ

    更新日期:2013-05-01 00:00:00

  • Decoupled mitochondrial and chloroplast DNA population structure reveals Holocene collapse and population isolation in a threatened Mexican-endemic conifer.

    abstract::Chihuahua spruce (Picea chihuahuana Martínez) is a montane subtropical conifer endemic to the Sierra Madre Occidental in northwestern México. Range-wide variation was investigated using maternally inherited mitochondrial (mtDNA) and paternally inherited chloroplast (cpDNA) DNA markers. Among the 16 mtDNA regions analy...

    journal_title:Molecular ecology

    pub_type: 历史文章,杂志文章

    doi:10.1111/j.1365-294X.2006.02974.x

    authors: Jaramillo-Correa JP,Beaulieu J,Ledig FT,Bousquet J

    更新日期:2006-09-01 00:00:00

  • Why close relatives make bad neighbours: phylogenetic conservatism in niche preferences and dispersal disproves Darwin's naturalization hypothesis in the thistle tribe.

    abstract::The number of exotic plant species that have been introduced into the United States far exceeds that of other groups of organisms, and many of these have become invasive. As in many regions of the globe, invasive members of the thistle tribe, Cardueae, are highly problematic in the California Floristic Province, an es...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13227

    authors: Park DS,Potter D

    更新日期:2015-06-01 00:00:00

  • How quantitative is metabarcoding: A meta-analytical approach.

    abstract::Metabarcoding has been used in a range of ecological applications such as taxonomic assignment, dietary analysis and the analysis of environmental DNA. However, after a decade of use in these applications there is little consensus on the extent to which proportions of reads generated corresponds to the original propor...

    journal_title:Molecular ecology

    pub_type: 杂志文章,meta分析

    doi:10.1111/mec.14920

    authors: Lamb PD,Hunter E,Pinnegar JK,Creer S,Davies RG,Taylor MI

    更新日期:2019-01-01 00:00:00

  • The legacy of a vanished sea: a high level of diversification within a European freshwater amphipod species complex driven by 15 My of Paratethys regression.

    abstract::The formation of continental Europe in the Neogene was due to the regression of the Tethys Ocean and of the Paratethys Sea. The dynamic geology of the area and repetitious transitions between marine and freshwater conditions presented opportunities for the colonization of newly emerging hydrological networks and diver...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13499

    authors: Mamos T,Wattier R,Burzyński A,Grabowski M

    更新日期:2016-02-01 00:00:00

  • Detection of environmental and morphological adaptation despite high landscape genetic connectivity in a pest grasshopper (Phaulacridium vittatum).

    abstract::Widespread species that exhibit both high gene flow and the capacity to occupy heterogeneous environments make excellent models for examining local selection processes along environmental gradients. Here we evaluate the influence of temperature and landscape variables on genetic connectivity and signatures of local ad...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15146

    authors: Yadav S,Stow AJ,Dudaniec RY

    更新日期:2019-07-01 00:00:00

  • Does adaptive radiation of a host lineage promote ecological diversity of its bacterial communities? A test using gut microbiota of Anolis lizards.

    abstract::Adaptive radiations provide unique opportunities to test whether and how recent ecological and evolutionary diversification of host species structures the composition of entire bacterial communities. We used 16S rRNA gene sequencing of faecal samples to test for differences in the gut microbiota of six species of Puer...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13796

    authors: Ren T,Kahrl AF,Wu M,Cox RM

    更新日期:2016-10-01 00:00:00

  • Long-distance gene flow and cross-Andean dispersal of lowland rainforest bees (Apidae: Euglossini) revealed by comparative mitochondrial DNA phylogeography.

    abstract::Euglossine bees (Apidae; Euglossini) exclusively pollinate hundreds of orchid species and comprise up to 25% of bee species richness in neotropical rainforests. As one of the first studies of comparative phylogeography in a neotropical insect group, we performed a mitochondrial DNA (mtDNA)-based analysis of 14 eugloss...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02374.x

    authors: Dick CW,Roubik DW,Gruber KF,Bermingham E

    更新日期:2004-12-01 00:00:00

  • Relationship between aquifer biofilms and unattached microbial indicators of urban groundwater contamination.

    abstract::Aquifers, springs and other groundwater-dependent ecosystems are threatened by urban land use, which causes water quality deterioration through nutrient loading, sewage infiltration, groundwater extraction and, along coasts, seawater intrusion. The presence of certain microbes in groundwater can indicate that an aquif...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15713

    authors: Scharping RJ,Garey JR

    更新日期:2020-10-28 00:00:00

  • Diverging patterns of mitochondrial and nuclear DNA diversity in subarctic black spruce: imprint of a founder effect associated with postglacial colonization.

    abstract::High-latitude ecotonal populations at the species margins may exhibit altered patterns of genetic diversity, resulting from more or less recent founder events and from bottleneck effects in response to climate oscillations. Patterns of genetic diversity were investigated in nine populations of the conifer black spruce...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01800.x

    authors: Gamache I,Jaramillo-Correa JP,Payette S,Bousquet J

    更新日期:2003-04-01 00:00:00

  • Species turnover (β-diversity) in ectomycorrhizal fungi linked to NH4+ uptake capacity.

    abstract::Ectomycorrhizal (EcM) fungal communities may be shaped by both deterministic and stochastic processes, potentially influencing ecosystem development and function. We evaluated community assembly processes for EcM fungi of Pseudotsuga menziesii among 12 sites up to 400 km apart in southwest British Columbia (Canada) by...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13435

    authors: Kranabetter JM,Hawkins BJ,Jones MD,Robbins S,Dyer T,Li T

    更新日期:2015-12-01 00:00:00

  • Ancient DNA from the extinct South American giant glyptodont Doedicurus sp. (Xenarthra: Glyptodontidae) reveals that glyptodonts evolved from Eocene armadillos.

    abstract::Glyptodonts were giant (some of them up to ~2400 kg), heavily armoured relatives of living armadillos, which became extinct during the Late Pleistocene/early Holocene alongside much of the South American megafauna. Although glyptodonts were an important component of Cenozoic South American faunas, their early evolutio...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13695

    authors: Mitchell KJ,Scanferla A,Soibelzon E,Bonini R,Ochoa J,Cooper A

    更新日期:2016-07-01 00:00:00

  • Gene expression profiling reveals deep-sea coral response to the Deepwater Horizon oil spill.

    abstract::Deep-sea coral communities are key components of the Gulf of Mexico ecosystem and were adversely affected by the Deepwater Horizon (DWH) oil spill. Coral colonies exposed to oil and dispersant exhibited mortality, damage and physiological signatures of stress. Understanding how corals respond to oil and dispersant exp...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14847

    authors: DeLeo DM,Herrera S,Lengyel SD,Quattrini AM,Kulathinal RJ,Cordes EE

    更新日期:2018-10-01 00:00:00

  • Extra-pair mating in a socially monogamous and paternal mouth-brooding cardinalfish.

    abstract::Many vertebrates form monogamous pairs to mate and care for their offspring. However, genetic tools have increasingly shown that offspring often arise from matings outside of the monogamous pair bond. Social monogamy is relatively common in coral reef fishes, but there have been few studies that have confirmed monogam...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15103

    authors: Rueger T,Harrison HB,Gardiner NM,Berumen ML,Jones GP

    更新日期:2019-05-01 00:00:00

  • Hybridization at an ecotone: ecological and genetic barriers between three Iberian vipers.

    abstract::The formation of stable genetic boundaries between emerging species is often diagnosed by reduced hybrid fitness relative to parental taxa. This reduced fitness can arise from endogenous and/or exogenous barriers to gene flow. Although detecting exogenous barriers in nature is difficult, we can estimate the role of ec...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12671

    authors: Tarroso P,Pereira RJ,Martínez-Freiría F,Godinho R,Brito JC

    更新日期:2014-03-01 00:00:00

  • Epigenetic variation predicts regional and local intraspecific functional diversity in a perennial herb.

    abstract::The ecological significance of epigenetic variation has been generally inferred from studies on model plants under artificial conditions, but the importance of epigenetic differences between individuals as a source of intraspecific diversity in natural plant populations remains essentially unknown. This study investig...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12911

    authors: Medrano M,Herrera CM,Bazaga P

    更新日期:2014-10-01 00:00:00

  • Resistance to gapeworm parasite has both additive and dominant genetic components in house sparrows, with evolutionary consequences for ability to respond to parasite challenge.

    abstract::Host-parasite relationships are likely to change over the coming decades in response to climate change and increased anthropogenic stressors. Understanding the genetic architecture of parasite resistance will aid prediction of species' responses to intensified parasite challenge. The gapeworm "Syngamus trachea" is pre...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15491

    authors: Lundregan SL,Niskanen AK,Muff S,Holand H,Kvalnes T,Ringsby TH,Husby A,Jensen H

    更新日期:2020-10-01 00:00:00

  • Plasticity paves the way in an adaptive radiation.

    abstract::Phenotypic plasticity has been hypothesized to play a central role in the evolution of phenotypic diversity across species (West-Eberhard ). Through 'genetic assimilation', phenotypes that are initially environmentally induced within species become genetically fixed over evolutionary time. While genetic assimilation h...

    journal_title:Molecular ecology

    pub_type: 评论,新闻

    doi:10.1111/mec.13926

    authors: Sikkink KL,Snell-Rood EC

    更新日期:2016-12-01 00:00:00

  • Postglacial climate changes and rise of three ecotypes of harbour porpoises, Phocoena phocoena, in western Palearctic waters.

    abstract::Despite no obvious barriers to gene flow in the marine realm, environmental variation and ecological specializations can lead to genetic differentiation in highly mobile predators. Here, we investigated the genetic structure of the harbour porpoise over the entire species distribution range in western Palearctic water...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12817

    authors: Fontaine MC,Roland K,Calves I,Austerlitz F,Palstra FP,Tolley KA,Ryan S,Ferreira M,Jauniaux T,Llavona A,Öztürk B,Öztürk AA,Ridoux V,Rogan E,Sequeira M,Siebert U,Vikingsson GA,Borrell A,Michaux JR,Aguilar A

    更新日期:2014-07-01 00:00:00

  • Nonallopatric and parallel origin of local reproductive barriers between two snail ecotypes.

    abstract::Theory suggests that speciation is possible without physical isolation of populations (hereafter, nonallopatric speciation), but recent nonallopatric models need the support of irrefutable empirical examples. We collected snails (Littorina saxatilis) from three areas on the NW coast of Spain to investigate the populat...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02330.x

    authors: Rolán-Alvarez E,Carballo M,Galindo J,Morán P,Fernández B,Caballero A,Cruz R,Boulding EG,Johannesson K

    更新日期:2004-11-01 00:00:00

  • A young clade repeating an old pattern: diversity in Nothonotus darters (Teleostei: Percidae) endemic to the Cumberland River.

    abstract::Hypotheses of diversification in eastern North American freshwater fishes have focused primarily on allopatric distributions of species between disjunct highland areas and major river systems. However, these hypotheses do not fully explain the rich diversity of species within highland regions and river systems. Relati...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04866.x

    authors: Keck BP,Near TJ

    更新日期:2010-11-01 00:00:00

  • Species-level predation network uncovers high prey specificity in a Neotropical army ant community.

    abstract::Army ants are among the top arthropod predators and considered keystone species in tropical ecosystems. During daily mass raids with many thousand workers, army ants hunt live prey, likely exerting strong top-down control on prey species. Many tropical sites exhibit a high army ant species diversity (>20 species), sug...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15078

    authors: Hoenle PO,Blüthgen N,Brückner A,Kronauer DJC,Fiala B,Donoso DA,Smith MA,Ospina Jara B,von Beeren C

    更新日期:2019-05-01 00:00:00

  • Marine genetic swamping: hybrids replace an obligately estuarine fish.

    abstract::Populations of obligately estuarine taxa are potentially small and isolated and may lack genetic variation and display regional differentiation as a result of drift and inbreeding. Hybridization with a wide-ranging marine congener should introduce genetic variation and reduce the effects of inbreeding depression and g...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2009.04501.x

    authors: Roberts DG,Gray CA,West RJ,Ayre DJ

    更新日期:2010-02-01 00:00:00