Development of a novel plasmid vector pTIO-1 adapted for electrotransformation of Porphyromonas gingivalis.

Abstract:

:We report here the construction of a plasmid vector designed for the efficient electrotransformation of the periodontal pathogen Porphyromonas gingivalis. The novel Escherichia coli-Bacteroides/P. gingivalis shuttle vector, designated pTIO-1, is based on the 11.0-kb E. coli-Bacteroides conjugative shuttle vector, pVAL-1 (a pB8-51 derivative). To construct pTIO-1, the pB8-51 origin of replication and erythromycin resistance determinant of pVAL-1 were cloned into the E. coli cloning vector pBluescript II SK(-) and non-functional regions were deleted. pTIO-1 has an almost complete multiple cloning site from pBluescript II SK(-). The size of pTIO-1 is 4.5kb, which is convenient for routine gene manipulation. pTIO-1 was introduced into P. gingivalis via electroporation, and erythromycin-resistant transformants carrying pTIO-1 were obtained. We characterized the transformation efficiency, copy number, host range, stability, and insert size capacity of pTIO-1. An efficient plasmid electrotransformation of P. gingivalis will facilitate functional analysis and expression of P. gingivalis genes, including the virulence factors of this bacterium.

journal_name

J Microbiol Methods

authors

Tagawa J,Inoue T,Naito M,Sato K,Kuwahara T,Nakayama M,Nakayama K,Yamashiro T,Ohara N

doi

10.1016/j.mimet.2014.07.032

subject

Has Abstract

pub_date

2014-10-01 00:00:00

pages

174-9

eissn

0167-7012

issn

1872-8359

pii

S0167-7012(14)00228-0

journal_volume

105

pub_type

杂志文章
  • A simple method to isolate salt-tolerant myxobacteria from marine samples.

    abstract::This paper describes a simple method for the isolation of salt-tolerant myxobacteria from marine conditions. As the results show in this paper, salt-tolerant myxobacteria are found to be able to grow, but unable to form fruiting bodies at high salt concentrations. The fruiting body structures of the salt-tolerant stra...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/s0167-7012(02)00029-5

    authors: Li YZ,Hu W,Zhang YQ,Qiu Zj,Zhang Y,Wu BH

    更新日期:2002-07-01 00:00:00

  • A single tube system for the detection of Mycobacterium tuberculosis DNA using gold nanoparticles based FRET assay.

    abstract::The global combat against MTB is limited by challenges in accurate affordable detection. In this study, a rapid, affordable, single tube system for detection of unamplified MTB16s rDNA was developed. Utilizing a AuNP based FRET system, this assay achieved a sensitivity and specificity of 98.6% and 90% respectively. ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2017.06.001

    authors: Mansour A,Tammam S,Althani A,Azzazy HME

    更新日期:2017-08-01 00:00:00

  • YTOX: a rapid toxicity test based on the dehydrogenase activity of Saccharomyces cerevisiae for detection of contaminants in water samples.

    abstract::A simple generic toxicity method (test) is proposed using baker's yeast to mediate the reduction of the colourless triphenyltetrazolium chloride (TTC) to red, 1,3,5-triphenyl formazan, which can be extracted by dimethyl sulfoxide (DMSO), enabling the identification of reducible toxic compounds (e.g. cadmium, fipronil)...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2019.04.008

    authors: Gomes LH,Duarte KMR,Kamogawa MY,Ferrarezi JA,Andrino FG,Tavares ACL,da Silva APM,Laguna SE,de Lira SP

    更新日期:2019-06-01 00:00:00

  • Quantification of homogentisate-1,2-dioxygenase expression in a fungus degrading ethylbenzene.

    abstract::A quantitative real time reverse transcription polymerase chain reaction (qRT-PCR) assay was utilized to quantify the expression of ElHDO in the fungus Exophiala lecanii-corni during the biodegradation of ethylbenzene and other volatile organic pollutants. The assay was applied to measure the impact of pollutant mixtu...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2006.03.018

    authors: Gunsch CK,Kinney KA,Szaniszlo PJ,Whitman CP

    更新日期:2006-11-01 00:00:00

  • Candida albicans viability after exposure to amphotericin B: assessment using metabolic assays and colony forming units.

    abstract::Metabolic assays are a preferred method for evaluation of Candida albicans viability after exposure to antimicrobial agents in cases in which the culture is a complex mixture of yeast and filamentous forms. There is a lack of published data indicating the strength of the correlation between metabolic assays and viable...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2007.12.005

    authors: Khot PD,Suci PA,Tyler BJ

    更新日期:2008-03-01 00:00:00

  • Comparison of two indirect ELISA coating antigens for the detection of dairy cow antibodies against Pasteurella multocida.

    abstract::The ELISA is recognized as an efficient diagnostic tool for antibody detection, but there is no standard ELISA assay for detection of antibodies against hemorrhagic septicemia (HS) in cattle. The present study reports on an indirect ELISA assay for antibody detection of HS in dairy cows, and evaluates the sensitivity ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2017.12.005

    authors: Tankaew P,Srisawat W,Singhla T,Tragoolpua K,Kataoka Y,Sawada T,Sthitmatee N

    更新日期:2018-02-01 00:00:00

  • RNA-based sandwich hybridisation method for detection of lactic acid bacteria in brewery samples.

    abstract::Recently we showed the applicability and sensitivity of the RNA-based sandwich hybridisation assay (SHA) for detection of gram-negative cells in environmental samples [Leskelä, T., Tilsala-Timisjärvi, A., Kusnetsov, J., Neubauer, P., Breitenstein, A., 2005. Sensitive genus-specific detection of Legionella by a 16S rRN...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2006.10.009

    authors: Huhtamella S,Leinonen M,Nieminen T,Fahnert B,Myllykoski L,Breitenstein A,Neubauer P

    更新日期:2007-03-01 00:00:00

  • Utility of the cytochrome c oxidase subunit I gene for the diagnosis of toxoplasmosis using PCR.

    abstract::Toxoplasmosis is caused by the protozoan parasite Toxoplasma gondii, which belongs to the phylum Apicomplexa. Since this parasite causes severe clinical symptoms in immunocompromised patients, early diagnosis of toxoplasmosis is essential. PCR is currently used for early diagnosis, but there is no consensus regarding ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2017.08.001

    authors: Feng X,Norose K,Li K,Hikosaka K

    更新日期:2017-10-01 00:00:00

  • Halophile, an essential platform for bioproduction.

    abstract::Industrial biotechnology aims to compete as a stronger alternative ensuring environmental friendly microbial-based production that seeks to curb the predicament of pollution. However, the high cost of bioprocessing is a severe drawback, and therefore, new approaches must be developed to overcome this challenge. Haloph...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章,评审

    doi:10.1016/j.mimet.2019.105704

    authors: Liu C,Baffoe DK,Zhan Y,Zhang M,Li Y,Zhang G

    更新日期:2019-11-01 00:00:00

  • Efficient sequential repetitive gene deletions in Neurospora crassa employing a self-excising β-recombinase/six cassette.

    abstract::Despite its long-standing history as a model organism, Neurospora crassa has limited tools for repetitive gene deletions utilizing recyclable self-excising marker systems. Here we describe, for the first time, the functionality of a bacterial recombination system employing β-recombinase acting on six recognition seque...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2012.12.004

    authors: Szewczyk E,Kasuga T,Fan Z

    更新日期:2013-03-01 00:00:00

  • Evaluation of urine for Leishmania infantum DNA detection by real-time quantitative PCR.

    abstract::The availability of some sorts of biological samples which require noninvasive collection methods has led to an even greater interest in applying molecular biology on visceral leishmaniasis (VL) diagnosis, since these samples increase the safety and comfort of both patients and health professionals. In this context, t...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2016.10.002

    authors: Pessoa-E-Silva R,Mendonça Trajano-Silva LA,Lopes da Silva MA,da Cunha Gonçalves-de-Albuquerque S,de Goes TC,Silva de Morais RC,Lopes de Melo F,de Paiva-Cavalcanti M

    更新日期:2016-12-01 00:00:00

  • Facile construction of unmarked deletion mutants in Burkholderia pseudomallei using sacB counter-selection in sucrose-resistant and sucrose-sensitive isolates.

    abstract::Burkholderia pseudomallei is the causative agent of melioidosis, a potentially fatal disease endemic or emerging world-wide. Here we report unmarked allele-replacement mutagenesis using efficient sacB counter-selection. Despite being genotypically sacB(+), most commonly used B. pseudomallei strains are sucrose-resista...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2008.12.007

    authors: Logue CA,Peak IR,Beacham IR

    更新日期:2009-03-01 00:00:00

  • Variation between observed and true Terminal Restriction Fragment length is dependent on true TRF length and purine content.

    abstract::Terminal Restriction Fragment (TRF) pattern analysis has become a widely used and informative tool for studying microbial communities. Variation between sequence-determined or true TRF length and observed TRF length (TRF drift) has been previously reported and can significantly affect identification of bacterial speci...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/s0167-7012(03)00003-4

    authors: Kaplan CW,Kitts CL

    更新日期:2003-07-01 00:00:00

  • Efficient differentiation of Corynebacterium striatum, Corynebacterium amycolatum and Corynebacterium xerosis clinical isolates by multiplex PCR using novel species-specific primers.

    abstract::A multiplex-PCR (mPCR) assay was designed with species-specific primers which generate amplicons of 226bp, 434bp and 106bp for differentiating the species C. striatum, C. amycolatum, and C. xerosis, respectively. mPCR results were 100% in agreement with identifications achieved by 16S rRNA and rpoB gene sequencing and...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2017.09.002

    authors: Santos CS,Ramos JN,Vieira VV,Pinheiro CS,Meyer R,Alcantara-Neves NM,Ramos RT,Silva A,Hirata R Jr,Felicori L,de Alegría Puig CR,Navas J,Azevedo V,Mattos-Guaraldi AL,Pacheco LGC

    更新日期:2017-11-01 00:00:00

  • Strategy for screening metagenomic resources for exocellulase activity using a robotic, high-throughput screening system.

    abstract::Exocellulases play a key role in cleaving the accessible ends of cellulose molecules to release soluble glucose and cellobiose. To date, there have been no screens for exocellulase owing to assay protocol limitations, the high cost of substrates, and low activity of exocellulases compared with endocellulases. This stu...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2013.07.010

    authors: Ko KC,Han Y,Cheong DE,Choi JH,Song JJ

    更新日期:2013-09-01 00:00:00

  • Comparison of two DNA extraction methods widely used in aquatic microbial ecology.

    abstract::In recent years, the rapid advances of culture-independent methods and new molecular tools have revolutionized our understanding of microbial biodiversity and ecological functions. DNA extraction from microbial communities is a critical step in this process and several methods have been proposed and used, but the infl...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2019.02.005

    authors: Mateus-Barros E,Meneghine AK,Bagatini IL,Fernandes CC,Kishi LT,Vieira AAH,Sarmento H

    更新日期:2019-04-01 00:00:00

  • McRAPD as a new approach to rapid and accurate identification of pathogenic yeasts.

    abstract::Despite advances in antifungal prophylaxis and therapy, morbidity and mortality incurred by yeasts remain a significant burden. As pathogenic yeast species vary in their susceptibilities to antifungal agents, clinical microbiology laboratories face an important challenge to identify them rapidly and accurately. Althou...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2004.09.003

    authors: Plachý R,Hamal P,Raclavský V

    更新日期:2005-01-01 00:00:00

  • A novel method for the measurement of dissolved adenosine and guanosine triphosphate in aquatic habitats: applications to marine microbial ecology.

    abstract::A novel method for the measurement of dissolved adenosine-5'-triphosphate and guanosine-5'-triphosphate (D-ATP and D-GTP, respectively) in marine and freshwater habitats was developed and applied to samples collected from the oligotrophic North Pacific Ocean. Both D-ATP and D-GTP are co-precipitated by authigenically ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/s0167-7012(01)00301-3

    authors: Björkman KM,Karl DM

    更新日期:2001-11-01 00:00:00

  • Proposal of protocols using D-glutamine to optimize the 2,3-bis(2-methoxy-4-nitro-5-sulfophenly)-5-[(phenylamino)carbonyl]-2H-tetrazolium hydroxide (XTT) assay for indirect estimation of microbial loads in biofilms of medical importance.

    abstract::Due to technical problems, biofilm biomasses are difficult to be precisely determined. One reliable strategy is based on the colorimetry of formazan compounds derived from tetrazolium salt reduction. XTT presents some desirable properties that make the biofilm measurements easier. However, cells entrapped within the e...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2010.12.018

    authors: Gobor T,Corol G,Ferreira LE,Rymovicz AU,Rosa RT,Campelo PM,Rosa EA

    更新日期:2011-02-01 00:00:00

  • Long term storage of fastidious bacteria (Neisseria spp. and Haemophilus spp.) with swab preservation at -80 °C.

    abstract::Preservation of strains is important to further studies and characterization; we have shown a technique of long-term preservation of Neisseria spp. and Haemophilus spp. by freezing cotton tip swabs impregnated with fastidious organisms at -80 °C without the addition of cryoprotectants. ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2020.105969

    authors: Villa L,Torreblanca A,Otero L,Carreño F,Campo R,López-Escobar M,Vazquez F

    更新日期:2020-08-01 00:00:00

  • A PCR-based method for detection of potato pathogen, Helminthosporium solani, in silver scurf infected tuber tissue and soils.

    abstract::Silver scurf caused by Helminthosporium solani causes significant economic losses in table stock, seed and processing potatoes. Specific polymerase chain reaction (PCR) primers, Hs1F1/Hs2R1, from H. solani were used for the amplification of a 447-bp product from 20 tissue samples and 54 single spore H. solani isolates...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/s0167-7012(00)00240-2

    authors: Errampalli D,Saunders J,Cullen D

    更新日期:2001-02-01 00:00:00

  • A procedure for separate recovery of extra- and intracellular DNA from a single marine sediment sample.

    abstract::Extracellular DNA (eDNA) is a ubiquitous biological compound in aquatic sediment and soil. Previous studies suggested that eDNA plays an important role in biogeochemical element cycling, horizontal gene transfer and stabilization of biofilm structures. Previous methods for eDNA extraction were either not suitable for ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2014.06.009

    authors: Alawi M,Schneider B,Kallmeyer J

    更新日期:2014-09-01 00:00:00

  • Microextraction and Gas Chromatography/Mass Spectrometry for improved analysis of geosmin and other fungal "off" volatiles in grape juice.

    abstract::Geosmin is a volatile fungal metabolite with an earthy aroma produced in grape products from rotten grapes. The accumulation of geosmin in grapes is caused by the interaction of Botrytis cinerea and Penicillium expansum. Solid Phase Microextraction (SPME) has great utility for collecting volatile compounds in wine. Ho...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2010.07.013

    authors: Morales-Valle H,Silva LC,Paterson RR,Oliveira JM,Venâncio A,Lima N

    更新日期:2010-10-01 00:00:00

  • A novel and convenient self-drying system for bacterial preservation.

    abstract::An effective microbial preservation technology for the long-term storage of viable prokaryotic cells is described. The method combines an almost instantaneous drying step with minimal stress to the cells during drying to maximize survival on rehydration. This is achieved by contact of a microlitre aliquot of a bacteri...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2005.02.014

    authors: Hays HC,Millner PA,Jones JK,Rayner-Brandes MH

    更新日期:2005-10-01 00:00:00

  • A bench-top automated workstation for nucleic acid isolation from clinical sample types.

    abstract::Systems that automate extraction of nucleic acid from cells or viruses in complex clinical matrices have tremendous value even in the absence of an integrated downstream detector. We describe our bench-top automated workstation that integrates our previously-reported extraction method - TruTip - with our newly-develop...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2018.03.021

    authors: Thakore N,Garber S,Bueno A,Qu P,Norville R,Villanueva M,Chandler DP,Holmberg R,Cooney CG

    更新日期:2018-05-01 00:00:00

  • Evaluation of functional gene enrichment in a soil metagenomic clone library.

    abstract::We evaluated the use of mixed oligonucleotide probes hybridized to metagenomic clones spotted on high density membranes. The pooled probes included oligonucleotides designed for genes associated with denitrification, antibiotic resistance, and dehalogenation among others. Pyrosequence comparison between the clones and...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2008.09.009

    authors: Demanèche S,David MM,Navarro E,Simonet P,Vogel TM

    更新日期:2009-01-01 00:00:00

  • A simple method for direct isolation of N-acyl-L-homoserine lactone mediated biofilm-forming rhizobacteria from roots.

    abstract::Plant-associated bacteria produce quorum sensing (QS) signals for community (biofilm) formation and functioning in the rhizosphere. The QS-positive biofilm-forming rhizobacteria that excel benefits to the plants are now gaining increased importance for agricultural use due to their high competitiveness. However, there...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2018.11.018

    authors: Begum JF,Tamilarasi M,Pushpakanth P,Balachandar D

    更新日期:2019-01-01 00:00:00

  • Effects of field conditions on fecal microbiota.

    abstract::Gut microbiota can provide great insight into host health, and studies of the gut microbiota in wildlife are becoming more common. However, the effects of field conditions on gut microbial samples are unknown. This study addresses the following questions: 1) How do environmental factors such as sunlight and insect inf...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2016.09.017

    authors: Hale VL,Tan CL,Niu K,Yang Y,Cui D,Zhao H,Knight R,Amato KR

    更新日期:2016-11-01 00:00:00

  • Hydrophysical correlation and water mass indication of optical physiological parameters of picophytoplankton in Prydz Bay during autumn 2008.

    abstract::Flow cytometry (FCM) is efficient in detecting both abundance and optical physiological parameters including cell size and cellular carbon content-side scatter (SSC), carotenoids-green and orange fluorescence (FL1 and FL2), and red fluorescence-chlorophylls (FL3) can be obtained by FCM. The utilization of these physio...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2012.09.030

    authors: Zhang F,Ma Y,Lin L,He J

    更新日期:2012-12-01 00:00:00

  • Real-time PCR for quantification of eleven individual Fusarium species in cereals.

    abstract::Contamination of cereals with Fusarium species is one of the major sources of mycotoxins in food and feed. Quantification of biomass of Fusarium species is essential to understand the interactions of individual species in disease development. In this study quantitative real-time PCR assays based on the elongation fact...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2008.10.016

    authors: Nicolaisen M,Suproniene S,Nielsen LK,Lazzaro I,Spliid NH,Justesen AF

    更新日期:2009-03-01 00:00:00