Trash to treasure: production of biofuels and commodity chemicals via syngas fermenting microorganisms.

Abstract:

:Fermentation of syngas is a means through which unutilized organic waste streams can be converted biologically into biofuels and commodity chemicals. Despite recent advances, several issues remain which limit implementation of industrial-scale syngas fermentation processes. At the cellular level, the energy conservation mechanism of syngas fermenting microorganisms has not yet been entirely elucidated. Furthermore, there was a lack of genetic tools to study and ultimately enhance their metabolic capabilities. Recently, substantial progress has been made in understanding the intricate energy conservation mechanisms of these microorganisms. Given the complex relationship between energy conservation and metabolism, strain design greatly benefits from systems-level approaches. Numerous genetic manipulation tools have also been developed, paving the way for the use of metabolic engineering and systems biology approaches. Rational strain designs can now be deployed resulting in desirable phenotypic traits for large-scale production.

journal_name

Curr Opin Biotechnol

authors

Latif H,Zeidan AA,Nielsen AT,Zengler K

doi

10.1016/j.copbio.2013.12.001

subject

Has Abstract

pub_date

2014-06-01 00:00:00

pages

79-87

eissn

0958-1669

issn

1879-0429

pii

S0958-1669(13)00716-7

journal_volume

27

pub_type

杂志文章,评审
  • Food applications of bacterial cell wall hydrolases.

    abstract::Bacterial cell wall hydrolases (BCWHs) display a remarkable structural and functional diversity that offers perspectives for novel food applications, reaching beyond those of the archetype BCWH and established biopreservative hen egg white lysozyme. Insights in BCWHs from bacteriophages to animals have provided concep...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2010.10.012

    authors: Callewaert L,Walmagh M,Michiels CW,Lavigne R

    更新日期:2011-04-01 00:00:00

  • Engineering approaches to study fibrosis in 3-D in vitro systems.

    abstract::Fibrotic diseases occur in virtually every tissue of the body and are a major cause of mortality, yet they remain largely untreatable and poorly understood on a mechanistic level. The development of anti-fibrotic agents has been hampered, in part, by the insufficient fibrosis biomimicry provided by traditional in vitr...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2016.02.006

    authors: Porras AM,Hutson HN,Berger AJ,Masters KS

    更新日期:2016-08-01 00:00:00

  • Applications of interaction traps/two-hybrid systems to biotechnology research.

    abstract::Two-hybrid methods provide a simple and sensitive means to detect the interaction between two proteins in living cells. Their use has resulted in the isolation of new proteins and has facilitated characterization of particular protein-protein interactions. These techniques have already resulted in the identification o...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/0958-1669(94)90061-2

    authors: Mendelsohn AR,Brent R

    更新日期:1994-10-01 00:00:00

  • Biocatalytic synthesis of hydroxylated natural products using aldolases and related enzymes.

    abstract::Synthetic building blocks bearing hydroxylated chiral centers are important targets for biocatalysis. Many C-C bond forming enzymes have recently been investigated for new applications and new strategies towards the synthesis of natural products and related oxygenated compounds. Several old catalysts have been studied...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(01)00265-8

    authors: Fessner WD,Helaine V

    更新日期:2001-12-01 00:00:00

  • Advances and current limitations in transcript-level control of gene expression.

    abstract::Gene expression control is critical to increase production of recombinant proteins, fine-tune metabolic pathways and reliably express synthetic pathways. The importance of transcriptional control seems to be most important in eukaryotic systems. In this review, we highlight recent developments in the field of transcri...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2014.12.015

    authors: Leavitt JM,Alper HS

    更新日期:2015-08-01 00:00:00

  • Epigenomic technologies for deciphering circulating tumor DNA.

    abstract::Tumor-derived DNA, found in body fluids (liquid biopsy) of cancer patients as part of cell-free DNA (cfDNA), lends itself for noninvasive cancer detection and monitoring. Advantages of cfDNA as analytical target have evoked a burst of sophisticated techniques, providing clinically relevant information. Each cell type ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2018.07.002

    authors: Daniūnaitė K,Jarmalaitė S,Kriukienė E

    更新日期:2019-02-01 00:00:00

  • Engineered fatty acid catabolism for fuel and chemical production.

    abstract::Fatty acid oxidation pathways are attractive for metabolic engineering purposes due to their cyclic nature as well as their reactions that allow for the selective functionalization of alkyl chains. These characteristics allow for the production of various chemicals, such as alcohols, alkanes, ketones and hydroxyacids,...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2016.07.004

    authors: Kim S,Cheong S,Chou A,Gonzalez R

    更新日期:2016-12-01 00:00:00

  • Computational methods for evaluation of cell-based data assessment--Bioconductor.

    abstract::Recent advances in miniaturization and automation of technologies have enabled cell-based assay high-throughput screening, bringing along new challenges in data analysis. Automation, standardization, reproducibility have become requirements for qualitative research. The Bioconductor community has worked in that direct...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2012.09.003

    authors: Le Meur N

    更新日期:2013-02-01 00:00:00

  • Recent advances in heterologous gene expression in Escherichia coli.

    abstract::Recent advances in protein expression in E. coli have focused primarily on the enhancement of protein quality. Problems in mRNA translation such as inefficient initiation, mistranslation, frame-shifting and frame-hopping can often be addressed by altering heterologous gene-coding sequences. Fusion technology can also ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/0958-1669(93)90071-4

    authors: Olins PO,Lee SC

    更新日期:1993-10-01 00:00:00

  • Membrane protein structures: the known world expands.

    abstract::The structure determinations of the cytochrome bc1 complex and the prokaryotic potassium channel demonstrate that a wider range of membrane proteins are now amenable to study by X-ray crystallography. Furthermore, the structures of porins and interfacial membrane proteins show that membrane structural biology is becom...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章

    doi:10.1016/s0958-1669(98)80005-0

    authors: Garavito RM

    更新日期:1998-08-01 00:00:00

  • Two-hybrid technologies in proteomics research.

    abstract::Given that protein-protein interactions (PPIs) regulate nearly every living process; the exploration of global and pathway-specific protein interaction networks is expected to have major implications in the understanding of diseases and for drug discovery. Consequently, the development and application of methodologies...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2008.06.005

    authors: Suter B,Kittanakom S,Stagljar I

    更新日期:2008-08-01 00:00:00

  • Dynamic covalent chemistry in aid of peptide self-assembly.

    abstract::Self-assembled peptide systems have been widely studied in the context of gaining understanding of the rules that govern biomolecular processes and increasingly as new bio-inspired nanomaterials. Such materials may be designed to be highly dynamic, displaying adaptive and self-healing properties. This review focuses o...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.copbio.2010.05.010

    authors: Sadownik JW,Ulijn RV

    更新日期:2010-08-01 00:00:00

  • Potential of industrial biotechnology with cyanobacteria and eukaryotic microalgae.

    abstract::Both cyanobacteria and eukaryotic microalgae are promising organisms for sustainable production of bulk products such as food, feed, materials, chemicals and fuels. In this review we will summarize the potential and current biotechnological developments. Cyanobacteria are promising host organisms for the production of...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2013.04.004

    authors: Wijffels RH,Kruse O,Hellingwerf KJ

    更新日期:2013-06-01 00:00:00

  • Population-level approaches reveal novel aspects of lignin biosynthesis, content, composition and structure.

    abstract::Population-level studies enabled by high-throughput phenotyping have revealed significant variation in lignin characteristics including content, S:G:H ratio, inter-unit linkage distributions, and molecular weights across multiple plant species. Coupled with genome-wide association mapping studies (GWAS) targeted at li...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2019.02.017

    authors: Tuskan GA,Muchero W,Tschaplinski TJ,Ragauskas AJ

    更新日期:2019-04-01 00:00:00

  • Making bio-sense of toxicity: new developments in whole-cell biosensors.

    abstract::Bacterial whole-cell biosensors are very useful for toxicity measurements of various samples. Semi-specific biosensors, containing fusions of stress-regulated promoters and reporter genes, have several advantages over the traditional, general biosensors that are based on constitutively expressed reporter genes. Furthe...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2005.12.007

    authors: Sørensen SJ,Burmølle M,Hansen LH

    更新日期:2006-02-01 00:00:00

  • Synthetic gene networks in mammalian cells.

    abstract::The design and construction of synthetic gene circuits with complex spatiotemporal dynamics was pioneered in bacteria, but it took almost a decade until synthetic biologists were able to construct genetic circuits with complex spatiotemporal dynamics in mammalian cells. This review highlights the most recent advances ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2010.07.006

    authors: Weber W,Fussenegger M

    更新日期:2010-10-01 00:00:00

  • Application of state-of-art sequencing technologies to indigenous food fermentations.

    abstract::Fermented foods and beverages are an integral part of the human diet globally. Understanding the microbial interactions within these fermenting ecosystems is required to deliver safe products with desirable consumer properties, and moreover, maintenance of these traditions. Effective tools are required for documentati...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2012.08.004

    authors: van Hijum SA,Vaughan EE,Vogel RF

    更新日期:2013-04-01 00:00:00

  • Globin gene switching: a paradigm or what?

    abstract::The delineation of the beta-globin locus control region has led to a new understanding of the developmental regulation of the beta-globin gene cluster. It now seems that globin gene switching is effected through the sequential and mutually exclusive interaction of the locus control region with the embryonic, fetal and...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(05)80108-9

    authors: Enver T,Greaves DR

    更新日期:1991-12-01 00:00:00

  • Biofuel production by in vitro synthetic enzymatic pathway biotransformation.

    abstract::Cell-free synthetic pathway biotransformation (SyPaB) is the implementation of complicated biochemical reactions by in vitro assembling a number of enzymes or their complexes and coenzymes. Assembly of numerous enzymes without cellular membrane, gene regulation, or undesired pathway can circumvent some of the obstacle...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2010.05.005

    authors: Zhang YH,Sun J,Zhong JJ

    更新日期:2010-10-01 00:00:00

  • The interplay between microevolution and community structure in microbial populations.

    abstract::The structure of microbial communities is key to their functionality. However, this structure is likely to be influenced by adaptive genetic change in members of the community, which can occur over a matter of days. Changes in community structure can in turn influence the evolutionary trajectories of species within th...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2013.02.022

    authors: O'Brien S,Hodgson DJ,Buckling A

    更新日期:2013-08-01 00:00:00

  • Homology-independent protein engineering.

    abstract::Is structure, rather than sequence, the key to the successful generation of truly novel proteins? While protein evolution by homologous recombination has become an established tool to explore confined regions in sequence space, the generation of functional hybrid proteins by homology-independent methods further expand...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(00)00106-3

    authors: Lutz S,Benkovic SJ

    更新日期:2000-08-01 00:00:00

  • Genetically encoded tools for RNA imaging in living cells.

    abstract::RNA imaging probes help us investigate how transport and dynamics of RNA contribute to subcellular RNA localization or regulation of gene expression. Out of the plethora of strategies that have been developed to image RNA in living cells, genetically encoded probes are interesting because they can be produced by the c...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2014.07.012

    authors: Rath AK,Rentmeister A

    更新日期:2015-02-01 00:00:00

  • RNA nanostructures and scaffolds for biotechnology applications.

    abstract::RNA plays important roles in the regulation of gene expressions and other cellular functions. It functions as both as an informational carrier and a nanomachine due to its complementary base-pairing ability and complexed three-dimensional structure. Several nanostructures have been designed and constructed by exploiti...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2018.11.006

    authors: Ohno H,Akamine S,Saito H

    更新日期:2019-08-01 00:00:00

  • Microfluidics for cell factory and bioprocess development.

    abstract::Bioindustry is expanding to an increasing variety of food, chemical and pharmaceutical products, each requiring rapid development of a dedicated cell factory and bioprocess. Microfluidic tools are, together with tools from synthetic biology and metabolic modeling, being employed in cell factory and bioprocess developm...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2018.08.011

    authors: Bjork SM,Joensson HN

    更新日期:2019-02-01 00:00:00

  • Poxviruses as expression vectors.

    abstract::Poxviruses are widely used for the cytoplasmic expression of recombinant genes in mammalian cells. Recent improvements allow high expression and simplify the integration of multiple foreign genes. Vaccinia virus mutants and other poxviruses that undergo abortive infection in mammalian cells are receiving special atten...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(97)80031-6

    authors: Carroll MW,Moss B

    更新日期:1997-10-01 00:00:00

  • Logic of gene regulatory networks.

    abstract::Regulatory networks of transcription factors and signaling molecules lie at the heart of development. Their architecture implements logic functions whose execution propels cells from one regulatory state to the next, thus driving development forward. As an example of a subcircuit that translates transcriptional input ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2007.07.008

    authors: Materna SC,Davidson EH

    更新日期:2007-08-01 00:00:00

  • RNA-based dynamic genetic controllers: development strategies and applications.

    abstract::Dynamic regulation of gene expression in response to various molecules is crucial for both basic science and practical applications. RNA is considered an attractive material for creating dynamic genetic controllers because of its specific binding to ligands, structural flexibility, programmability, and small size. Her...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.10.005

    authors: Jang S,Jang S,Yang J,Seo SW,Jung GY

    更新日期:2018-10-01 00:00:00

  • Visualization of data.

    abstract::Data visualization has developed in several directions: theoretical; methodological; and in new application areas. Advances include the development of a grammar of graphics, deeper understanding of human perception and implications for graphical layout, and better approaches to visualizing multi-dimensional data and l...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(99)00060-9

    authors: Meyer RD,Cook D

    更新日期:2000-02-01 00:00:00

  • Extracellular production of recombinant proteins using bacterial autotransporters.

    abstract::Escherichia coli is still a very popular host for the production of recombinant proteins at an analytical or industrial scale. Secretion of the proteins into the culture medium or display at the cell surface would be preferred in many applications but is hampered by the complex two-layered cell envelope. The autotrans...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2010.07.009

    authors: Jong WS,Saurí A,Luirink J

    更新日期:2010-10-01 00:00:00

  • Reductive catalytic fractionation: state of the art of the lignin-first biorefinery.

    abstract::Reductive catalytic fractionation (RCF) of lignocellulose is an emerging biorefinery scheme that combines biomass fractionation with lignin depolymerisation. Central to this scheme is the integration of heterogeneous catalysis, which overcomes the tendency of lignin to repolymerise. Ultimately, this leads to a low-Mw ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2018.12.005

    authors: Renders T,Van den Bossche G,Vangeel T,Van Aelst K,Sels B

    更新日期:2019-04-01 00:00:00