Abstract:
:The multi-channel nature of digital histopathological images presents an opportunity to exploit the correlated color channel information for better image modeling. Inspired by recent work in sparsity for single channel image classification, we propose a new simultaneous sparsity model for multi-channel histopathological image representation and classification (SHIRC). Essentially, we represent a histopathological image as a sparse linear combination of training examples under suitable channel-wise constraints. Classification is performed by solving a newly formulated simultaneous sparsity-based optimization problem. A practical challenge is the correspondence of image objects (cellular and nuclear structures) at different spatial locations in the image. We propose a robust locally adaptive variant of SHIRC (LA-SHIRC) to tackle this issue. Experiments on two challenging real-world image data sets: 1) mammalian tissue images acquired by pathologists of the animal diagnostics lab (ADL) at Pennsylvania State University, and 2) human intraductal breast lesions, reveal the merits of our proposal over state-of-the-art alternatives. Further, we demonstrate that LA-SHIRC exhibits a more graceful decay in classification accuracy against the number of training images which is highly desirable in practice where generous training per class is often not available.
journal_name
IEEE Trans Med Imagingjournal_title
IEEE transactions on medical imagingauthors
Srinivas U,Mousavi HS,Monga V,Hattel A,Jayarao Bdoi
10.1109/TMI.2014.2306173subject
Has Abstractpub_date
2014-05-01 00:00:00pages
1163-79issue
5eissn
0278-0062issn
1558-254Xjournal_volume
33pub_type
杂志文章abstract::3D Statistical Shape Models (3D-SSM) are widely used for medical image segmentation. However, during segmentation, they typically perform a very limited unidirectional search for suitable landmark positions in the image, relying on weak learners or use-case specific appearance models that solely take local image infor...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2016.2600502
更新日期:2017-01-01 00:00:00
abstract::This paper investigates the problem of atlas registration of brain images with gliomas. Multiparametric imaging modalities (T1, T1-CE, T2, and FLAIR) are first utilized for segmentations of different tissues, and to compute the posterior probability map (PBM) of membership to each tissue class, using supervised learni...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2010.2078833
更新日期:2011-02-01 00:00:00
abstract::Echo-planar imaging (EPI) is a fast nuclear magnetic resonance imaging (MRI) method. Unfortunately, local magnetic field inhomogeneities induced mainly by the subject's presence cause significant geometrical distortion, predominantly along the phase-encoding direction, which must be undone to allow for meaningful furt...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/42.836368
更新日期:2000-02-01 00:00:00
abstract::A common method of increasing hemodynamic response (SNR) in functional magnetic resonance imaging (fMRI) is to average signal timecourses across voxels. This technique is potentially problematic because the hemodynamic response may vary across the brain. Such averaging may destroy significant features in the temporal ...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2003.819922
更新日期:2004-01-01 00:00:00
abstract::In this paper, we show how a dense surface point distribution model of the human face can be computed and demonstrate the usefulness of the high-dimensional shape-space for expressing the shape changes associated with growth and aging. We show how average growth trajectories for the human face can be computed in the a...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2003.814784
更新日期:2003-06-01 00:00:00
abstract::Magnetic resonance (MR) tagging has been shown to be a useful technique for noninvasively measuring the deformation of an in vivo heart. An important step in analyzing tagged images is the identification of tag lines in each image of a cine sequence. Most existing tag identification algorithms require user defined myo...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/42.768842
更新日期:1999-04-01 00:00:00
abstract::We introduce an approach for image segmentation based on sparse correspondences between keypoints in testing and training images. Keypoints represent automatically identified distinctive image locations, where each keypoint correspondence suggests a transformation between images. We use these correspondences to transf...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2018.2851194
更新日期:2020-02-01 00:00:00
abstract::Anisotropic multi-slice Cardiac Magnetic Resonance (CMR) Images are conventionally acquired in patient-specific short-axis (SAX) orientation. In specific cardiovascular diseases that affect right ventricular (RV) morphology, acquisitions in standard axial (AX) orientation are preferred by some investigators, due to po...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2021.3052972
更新日期:2021-01-20 00:00:00
abstract::Image textures in computed tomography colonography (CTC) have great potential for differentiating non-neoplastic from neoplastic polyps and thus can advance the current CTC detection-only paradigm to a new level with diagnostic capability. However, image textures are frequently compromised, particularly in low-dose CT...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2016.2518958
更新日期:2016-06-01 00:00:00
abstract::The automatic diagnosis of various retinal diseases from fundus images is important to support clinical decision-making. However, developing such automatic solutions is challenging due to the requirement of a large amount of human-annotated data. Recently, unsupervised/self-supervised feature learning techniques recei...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2020.3008871
更新日期:2020-12-01 00:00:00
abstract::Computed tomography (CT) has become the new reference standard for quantification of emphysema. The most popular measure of emphysema derived from CT is the pixel index (PI), which expresses the fraction of the lung volume with abnormally low intensity values. As PI is calculated from a single, fixed threshold on inte...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2006.871545
更新日期:2006-04-01 00:00:00
abstract::Magnetic resonance imaging (MRI) has been commonly used for guiding and planning image guided interventions since it provides excellent soft tissue visualization of anatomy and allows motion modeling to predict the position of target tissues during the procedure. However, MRI-based motion modeling remains challenging ...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2011.2181997
更新日期:2012-03-01 00:00:00
abstract::Digital processing that increases resolution by spatial deconvolution and histogram-based amplitude mapping has been used to improve ultrasonic abdominal image quality. The processing was applied to pulse-echo ultrasound data obtained from clinical imaging instrumentation modified to permit digital recording of signal...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.1983.4307617
更新日期:1983-01-01 00:00:00
abstract::Bronchoscopy is a major step in lung cancer staging. To perform bronchoscopy, the physician uses a procedure plan, derived from a patient's 3D computed-tomography (CT) chest scan, to navigate the bronchoscope through the lung airways. Unfortunately, physicians vary greatly in their ability to perform bronchoscopy. As ...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2013.2252361
更新日期:2013-08-01 00:00:00
abstract::Dynamic contrast-enhanced magnetic resonance imaging (MRI) is a promising tool in the evaluation of tumor physiology. From rapidly acquired images and a model for contrast agent pharmacokinetics, physiological parameters are derived. One pharmacokinetic model, the tissue homogeneity model, enables estimation of both b...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2009.2016212
更新日期:2009-09-01 00:00:00
abstract::We propose a technique aimed at increasing the sensitivity of magnetic resonance imaging (MRI) measurements to the signal from moving material. The technique is formulated within the framework of a velocity phase-encoding strategy. The salient new feature of the protocol is the application of an excitation pulse, foll...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.1987.4307814
更新日期:1987-01-01 00:00:00
abstract::We describe a new approach to the problem of collimator optimization in nuclear medicine; our methodology is illustrated for the challenging case of gallium-67 imaging. Collimator-design methods based on empirical rules, such as specification of an allowable level of single-septal penetration (SSP) at a fixed energy, ...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2005.857211
更新日期:2005-10-01 00:00:00
abstract::Magnetic resonance imaging (MRI) reconstruction techniques are often validated with signal-to-noise ratio (SNR), contrast-to-noise ratio, and mean-to-standard-deviation ratio measured on example images. We present human and model observers as a novel approach to evaluating reconstructions for low-SNR magnetic resonanc...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2006.881374
更新日期:2006-11-01 00:00:00
abstract::In this paper, we investigate the automatic detection of white and brown adipose tissues using Positron Emission Tomography/Computed Tomography (PET/CT) scans, and develop methods for the quantification of these tissues at the whole-body and body-region levels. We propose a patient-specific automatic adiposity analysi...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2016.2636188
更新日期:2017-03-01 00:00:00
abstract::In this paper, we propose a robust wavelet domain method for noise filtering in medical images. The proposed method adapts itself to various types of image noise as well as to the preference of the medical expert; a single parameter can be used to balance the preservation of (expert-dependent) relevant details against...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2003.809588
更新日期:2003-03-01 00:00:00
abstract::It is now recognized that prediction of the vulnerable coronary plaque rupture requires not only an accurate quantification of fibrous cap thickness and necrotic core morphology but also a precise knowledge of the mechanical properties of plaque components. Indeed, such knowledge would allow a precise evaluation of th...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2009.2012852
更新日期:2009-07-01 00:00:00
abstract::The study presented in this paper tests the hypothesis that the combination of a global similarity transformation and local free-form deformations can be used for the accurate segmentation of internal structures in MR images of the brain. To quantitatively evaluate our approach, the entire brain, the cerebellum, and t...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/42.811271
更新日期:1999-10-01 00:00:00
abstract::Visual estimation of coronary obstruction severity from angiograms suffers from poor inter- and intraobserver reproducibility and is often inaccurate. In spite of the widely recognized limitations of visual analysis, automated methods have not found widespread clinical use, in part because they too frequently fail to ...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/42.370412
更新日期:1995-01-01 00:00:00
abstract::Strategies for improvement of blood flow by promoting new vessel growth in ischemic tissue are being developed. Recently, contrast-enhanced ultrasound (CEU) imaging has been used to assess tissue perfusion in models of ischemia-related angiogenesis, growth-factor mediated angiogenesis, and tumor angiogenesis. In these...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/tmi.2006.877442
更新日期:2006-08-01 00:00:00
abstract::The quality and quantitative accuracy of iteratively reconstructed SPECT images improves when better point spread function (PSF) models of the gamma camera are used during reconstruction. Here, inclusion in the PSF model of photon crosstalk between different slices caused by limited gamma camera resolution and scatter...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/42.511752
更新日期:1996-01-01 00:00:00
abstract::A fully automated 2-D+time myocardial segmentation framework is proposed for cardiac magnetic resonance (CMR) blood-oxygen-level-dependent (BOLD) data sets. Ischemia detection with CINE BOLD CMR relies on spatio-temporal patterns in myocardial intensity, but these patterns also trouble supervised segmentation methods,...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2017.2726112
更新日期:2017-11-01 00:00:00
abstract::This paper presents a new approach to characterize subtle diffuse changes in multiple sclerosis (MS) using histograms derived from magnetization transfer ratio (MTR) images. Two major parts dominate our histogram analysis; 1) Classification of MTR histograms into control and MS subgroups; 2) Correlation with current d...
journal_title:IEEE transactions on medical imaging
pub_type: 临床试验,杂志文章
doi:10.1109/TMI.2002.1000256
更新日期:2002-04-01 00:00:00
abstract::This paper describes several methods for magnetic resonance angiography that create projection images based solely on flowing blood. To both remove static tissue from the image and generate signals from blood, two classes of methods considered are temporal subtraction and cancelling excitation. Temporal subtraction, a...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.1986.4307763
更新日期:1986-01-01 00:00:00
abstract::Coronary artery disease is a major cause of death in women. Breast arterial calcifications (BACs), detected inmammograms, can be useful riskmarkers associated with the disease. We investigate the feasibility of automated and accurate detection ofBACsinmammograms for risk assessment of coronary artery disease. We devel...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2017.2655486
更新日期:2017-05-01 00:00:00
abstract::We express the performance of the N-class "guessing" observer in terms of the N2-N conditional probabilities which make up an N-class receiver operating characteristic (ROC) space, in a formulation in which sensitivities are eliminated in constructing the ROC space (equivalent to using false-negative fraction and fals...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/tmi.2004.841227
更新日期:2005-03-01 00:00:00