Screening of ecologically diverse fungi for their potential to pretreat lignocellulosic bioenergy feedstock.

Abstract:

:A widespread and hitherto by far underexploited potential among ecologically diverse fungi to pretreat wheat straw and digestate from maize silage in the future perspective of using such lignocellulosic feedstock for fermentative bioenergy production was inferred from a screening of nine freshwater ascomycetes, 76 isolates from constructed wetlands, nine peatland isolates and ten basidiomycetes. Wheat straw pretreatment was most efficient with three ascomycetes belonging to the genera Acephala (peatland isolate) and Stachybotrys (constructed wetland isolates) and two white-rot fungi (Hypholoma fasciculare and Stropharia rugosoannulata) as it increased the amounts of water-extractable total sugars by more than 50 % and sometimes up to 150 % above the untreated control. The ascomycetes delignified wheat straw at rates (lignin losses between about 31 and 40 % of the initial content) coming close to those observed with white-rot fungi (about 40 to 57 % lignin removal). Overall, fungal delignification was indicated as a major process facilitating the digestibility of wheat straw. Digestate was generally more resistant to fungal decomposition than wheat straw. Nevertheless, certain ascomycetes delignified this substrate to extents sometimes even exceeding delignification by basidiomycetes. Total sugar amounts of about 20 to 60 % above the control value were obtained with the most efficient fungi (one ascomycete of the genus Phoma, the unspecific wood-rot basidiomycete Agrocybe aegerita and one unidentified constructed wetland isolate). This was accompanied by lignin losses of about 47 to 56 % of the initial content. Overall, digestate delignification was implied to be less decisive for high yields of fermentable sugars than wheat straw delignification.

authors

Singh S,Harms H,Schlosser D

doi

10.1007/s00253-014-5563-4

subject

Has Abstract

pub_date

2014-04-01 00:00:00

pages

3355-70

issue

7

eissn

0175-7598

issn

1432-0614

journal_volume

98

pub_type

杂志文章
  • Molecular design for recombinant adeno-associated virus (rAAV) vector production.

    abstract::Recombinant adeno-associated virus (rAAV) vectors are increasingly popular tools for gene therapy applications. Their non-pathogenic status, low inflammatory potential, availability of viral serotypes with different tissue tropisms, and prospective long-lasting gene expression are important attributes that make rAAVs ...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章,评审

    doi:10.1007/s00253-017-8670-1

    authors: Aponte-Ubillus JJ,Barajas D,Peltier J,Bardliving C,Shamlou P,Gold D

    更新日期:2018-02-01 00:00:00

  • Mutational analysis to identify the residues essential for the inhibition of N-acetyl glutamate kinase of Corynebacterium glutamicum.

    abstract::N-acetyl glutamate kinase (NAGK) is a key enzyme in the synthesis of L-arginine that is inhibited by its end product L-arginine in Corynebacterium glutamicum (C. glutamicum). In this study, the potential binding sites of arginine and the residues essential for its inhibition were identified by homology modeling, inhib...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-015-6469-5

    authors: Huang Y,Zhang H,Tian H,Li C,Han S,Lin Y,Zheng S

    更新日期:2015-09-01 00:00:00

  • The preparation and therapeutic roles of scFv-Fc antibody against Staphylococcus aureus infection to control bovine mastitis.

    abstract::Staphylococcus aureus-induced bovine mastitis causes significant losses to the dairy industry and available vaccines do not confer adequate protection. As a more attractive alternative, we propose the use of antibody (Ab) therapy. In our previous study, we constructed a bovine single-chain variable fragment (scFv) Ab ...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-018-9548-6

    authors: Wang M,Wang T,Guan Y,Wang F,Zhu J

    更新日期:2019-02-01 00:00:00

  • Production of sophorolipids from whey: development of a two-stage process with Cryptococcus curvatus ATCC 20509 and Candida bombicola ATCC 22214 using deproteinized whey concentrates as substrates.

    abstract::In order to produce sophorolipids from whey, thereby lowering the lactose content and biological oxygen demand, a two-step batch cultivation process was developed including medium sterilization by filtration. In the first step, whey was sterilized by a combination of crossflow and sterile filtration. Because the sopho...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s002530051360

    authors: Daniel HJ,Otto RT,Binder M,Reuss M,Syldatk C

    更新日期:1999-01-01 00:00:00

  • Maximal release of highly bifidogenic soluble dietary fibers from industrial potato pulp by minimal enzymatic treatment.

    abstract::Potato pulp is a poorly utilized, high-volume co-processing product resulting from industrial potato starch manufacturing. Potato pulp mainly consists of the tuber plant cell wall material and is particularly rich in pectin, notably galactan branched rhamnogalacturonan I type pectin which has previously been shown to ...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-011-3092-y

    authors: Thomassen LV,Vigsnæs LK,Licht TR,Mikkelsen JD,Meyer AS

    更新日期:2011-05-01 00:00:00

  • Production of gamma-linolenic acid by Cunninghamella echinulata cultivated on glucose and orange peel.

    abstract::A newly isolated strain of Cunninghamella echinulata grown on glucose produced significant quantities of biomass and cellular lipids in media with high C/N ratio. The oil yield from glucose consumed increased after nitrogen exhaustion in the growth medium, but gamma-linolenic acid (GLA) content in cellular oil systema...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-001-0910-7

    authors: Gema H,Kavadia A,Dimou D,Tsagou V,Komaitis M,Aggelis G

    更新日期:2002-03-01 00:00:00

  • n-3 PUFA reduction caused by fabp2 deletion interferes with triacylglycerol metabolism and cholesterolhomeostasis in fish.

    abstract::Fatty acid-binding protein 2 (Fabp2), which is involved in the transport of long-chain fatty acids, is widely studied in mammals. Nevertheless, the role of this protein in teleost fish is mostly unknown. Here, we produced a fabp2-/- zebrafish (KO) animal model. Compared with wild-type zebrafish (WT), KO had a markedly...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-020-10366-9

    authors: Zhao Y,Cao X,Fu L,Gao J

    更新日期:2020-03-01 00:00:00

  • Soil bacterial community responses to revegetation of moving sand dune in semi-arid grassland.

    abstract::Grasslands in semi-arid Northern China are widely desertified, thus inducing the formation of a large area of moving sand lands. Revegetation of the sandy land is commonly adopted to restore degraded grasslands. The structure of the soil microbial community might dramatically change during degradation and recovery bec...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-017-8336-z

    authors: Cao C,Zhang Y,Cui Z,Feng S,Wang T,Ren Q

    更新日期:2017-08-01 00:00:00

  • Identification of tomato miRNAs responsive to root colonization by endophytic Pochonia chlamydosporia.

    abstract::The molecular mechanisms active during the endophytic phase of the fungus Pochonia chlamydosporia are still poorly understood. In particular, few data are available on the links between the endophyte and the root response, as modulated by noncoding small RNAs. In this study, we describe the microRNAs (miRNAs) that are...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-017-8608-7

    authors: Pentimone I,Lebrón R,Hackenberg M,Rosso LC,Colagiero M,Nigro F,Ciancio A

    更新日期:2018-01-01 00:00:00

  • Microbial transformation of benzene to cis-3,5-cyclohexadien-1,2-diols by recombinant bacteria harboring toluene dioxygenase gene tod.

    abstract::Toluene dioxygenase (TDO) catalyzes asymmetric cis-dihydroxylation of aromatic compounds. To achieve high efficient biotransformation of benzene to benzene cis-diols, Pseudomonas putida KT2442, Pseudomonas stutzeri 1317, and Aeromonas hydrophila 4AK4 were used as hosts to express TDO gene tod. Plasmid pSPM01, a deriva...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-006-0637-6

    authors: Ouyang SP,Sun SY,Liu Q,Chen J,Chen GQ

    更新日期:2007-02-01 00:00:00

  • Temporal and spatial distribution of Bacillus and Clostridium histolyticum in swine manure composting by fluorescent in situ hybridization (FISH).

    abstract::The temporal and spatial distribution of the genus Bacillus and Clostridium histolyticum group in swine manure composting was determined by fluorescent in situ hybridization using fluorescently labeled 16S rRNA-targeted oligonucleotide probes LGC353b and Chis150, respectively. The temporal distribution of total bacter...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-011-3558-y

    authors: Yi J,Zheng R,Li F,Chao Z,Deng CY,Wu J

    更新日期:2012-03-01 00:00:00

  • Single-cell protein production from Jerusalem artichoke extract by a recently isolated marine yeast Cryptococcus aureus G7a and its nutritive analysis.

    abstract::After crude protein of the marine yeast strains maintained in this laboratory was estimated by the method of Kjehldahl, we found that the G7a strain which was identified to be a strain of Cryptococcus aureus according to the routine identification and molecular methods contained high level of protein and could grow on...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-007-1210-7

    authors: Gao L,Chi Z,Sheng J,Ni X,Wang L

    更新日期:2007-12-01 00:00:00

  • Occurrence and function of enzymes for lignocellulose degradation in commercial Agaricus bisporus cultivation.

    abstract::The white button mushroom Agaricus bisporus is economically the most important commercially produced edible fungus. It is grown on carbon- and nitrogen-rich substrates, such as composted cereal straw and animal manure. The commercial mushroom production process is usually performed in buildings or tunnels under highly...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章,评审

    doi:10.1007/s00253-017-8294-5

    authors: Kabel MA,Jurak E,Mäkelä MR,de Vries RP

    更新日期:2017-06-01 00:00:00

  • Transformation of iron sulfide to greigite by nitrite produced by oil field bacteria.

    abstract::Nitrate, injected into oil fields, can oxidize sulfide formed by sulfate-reducing bacteria (SRB) through the action of nitrate-reducing sulfide-oxidizing bacteria (NR-SOB). When reservoir rock contains siderite (FeCO(3)), the sulfide formed is immobilized as iron sulfide minerals, e.g. mackinawite (FeS). The aim of ou...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-009-1932-9

    authors: Lin S,Krause F,Voordouw G

    更新日期:2009-05-01 00:00:00

  • Aroma compounds production by solid state fermentation, importance of in situ gas-phase recovery systems.

    abstract::Flavour and fragrance compounds are extremely important for food, feed, cosmetic and pharmaceutical industries. In the last decades, due to the consumer's increased trend towards natural products, a great interest in natural aroma compounds has arisen to the detriment of chemically synthesised ones. Recently, solid st...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章,评审

    doi:10.1007/s00253-018-9157-4

    authors: Try S,Voilley A,Chunhieng T,De-Coninck J,Waché Y

    更新日期:2018-09-01 00:00:00

  • Molecular characterization of a novel thermal stable reductase capable of decoloration of both azo and triphenylmethane dyes.

    abstract::The gene encoding a putative triphenylmethane reductase (TMR)-like protein derived from Geobacillus thermoglucosidasius C56-Y593 (named as GtAZR) was synthesized, heterologously expressed in Escherichia coli, and extensively characterized for the first time. The recombinant GtAZR displayed its maximum activity at pH 5...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-014-5896-z

    authors: Gao F,Ding H,Shao L,Xu X,Zhao Y

    更新日期:2015-01-01 00:00:00

  • Hybrid thermochemical processing: fermentation of pyrolysis-derived bio-oil.

    abstract::Thermochemical processing of biomass by fast pyrolysis provides a nonenzymatic route for depolymerization of biomass into sugars that can be used for the biological production of fuels and chemicals. Fermentative utilization of this bio-oil faces two formidable challenges. First is the fact that most bio-oil-associate...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章,评审

    doi:10.1007/s00253-011-3495-9

    authors: Jarboe LR,Wen Z,Choi D,Brown RC

    更新日期:2011-09-01 00:00:00

  • Characterization of bacterial and archaeal communities in air-cathode microbial fuel cells, open circuit and sealed-off reactors.

    abstract::A large percentage of organic fuel consumed in a microbial fuel cell (MFC) is lost as a result of oxygen transfer through the cathode. In order to understand how this oxygen transfer affects the microbial community structure, reactors were operated in duplicate using three configurations: closed circuit (CC; with curr...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-013-5025-4

    authors: Shehab N,Li D,Amy GL,Logan BE,Saikaly PE

    更新日期:2013-11-01 00:00:00

  • Nanomaterials: new weapons in a crusade against phytopathogens.

    abstract::Bacteria, fungi, viruses, and nematodes are the major causal agents of plant diseases. These phytopathogens are responsible for about 10-40% losses in productivity and quality of food crops and horticultural produce. Although eradication of pathogens is not possible, control of plant diseases has been an area of conti...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章,评审

    doi:10.1007/s00253-019-10334-y

    authors: Rajwade JM,Chikte RG,Paknikar KM

    更新日期:2020-02-01 00:00:00

  • Characterization of the metabolic shift of Saccharomyces bayanus var. uvarum by continuous aerobic culture.

    abstract::Saccharomyces bayanus, being of interest for wine-making, is not as well known as S. cerevisiae and, due to many changes in the yeast classification, accurate data concerning its metabolic activity are difficult to find. In order to produce this yeast as an active dry yeast to be used as a starter in wine-making, its ...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-003-1288-5

    authors: Serra A,Strehaiano P,Taillandier P

    更新日期:2003-10-01 00:00:00

  • Improvement of alpha-L: -arabinofuranosidase production by Talaromyces thermophilus and agro-industrial residues saccharification.

    abstract::This study is an application of an experimental design methodology for the optimization of the culture conditions of alpha-L: -arabinofuranosidase production by Talaromyces thermophilus. Wheat bran and yeast extract were first selected as the best carbon and nitrogen sources, respectively, for enzyme production. A Pla...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-009-2178-2

    authors: Guerfali M,Chaabouni M,Gargouri A,Belghith H

    更新日期:2010-02-01 00:00:00

  • β-glucosidase from Penicillium aculeatum hydrolyzes exo-, 3-O-, and 6-O-β-glucosides but not 20-O-β-glucoside and other glycosides of ginsenosides.

    abstract::A novel β-glucosidase from Penicillium aculeatum was purified as a single 110.5-kDa band on SDS-PAGE with a specific activity of 75.4 U mg⁻¹ by salt precipitation and Hi-Trap Q HP and Resource Q ion exchange chromatographies. The purified enzyme was identified as a member of the glycoside hydrolase 3 family based on i...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-013-4828-7

    authors: Lee GW,Yoo MH,Shin KC,Kim KR,Kim YS,Lee KW,Oh DK

    更新日期:2013-07-01 00:00:00

  • Functional analysis of the dehydratase domains of a PUFA synthase from Thraustochytrium in Escherichia coli.

    abstract::Thraustochytrium sp. 26185, a unicellular marine protist, synthesizes docosahexaenoic acid, an omega-3 very long chain polyunsaturated fatty acid (VLC-PUFAs), by a polyunsaturated fatty acid (PUFA) synthase comprising three large subunits with multiple catalytic dehydratase (DH) domains critical for introducing double...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-017-8635-4

    authors: Xie X,Meesapyodsuk D,Qiu X

    更新日期:2018-01-01 00:00:00

  • Linking seasonal inorganic nitrogen shift to the dynamics of microbial communities in the Chesapeake Bay.

    abstract::Seasonal shifts of dissolved inorganic nitrogen (DIN) and the dynamics of microbial communities for nitrogen transformation were investigated in the water column of Chesapeake Bay. The relative abundance of nitrogen over phosphorus (N) showed a strong seasonal and spatial pattern: gradually decreased from upstream to ...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-013-5337-4

    authors: Hong Y,Xu X,Kan J,Chen F

    更新日期:2014-04-01 00:00:00

  • Clavulanic acid, a beta-lactamase inhibitor: biosynthesis and molecular genetics.

    abstract::Clavulanic acid is a secondary metabolite produced by Streptomyces clavuligerus. It possesses a clavam structure and a characteristic 3R,5R stereochemistry essential for action as a beta-lactamase inhibitory molecule. It is produced from glyceraldehyde-3-phosphate and arginine in an eight step biosynthetic pathway. Th...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章,评审

    doi:10.1007/s002530000420

    authors: Liras P,Rodríguez-García A

    更新日期:2000-10-01 00:00:00

  • Profile of bacterial communities in South African mine-water samples using Illumina next-generation sequencing platform.

    abstract::Mine water is an example of an extreme environment that contains a large number of diverse and specific bacteria. It is imperative to gain an understanding of these bacterial communities in order to develop effective strategies for the bioremediation of polluted aquatic systems. In this study, the high-throughput sequ...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-014-6213-6

    authors: Keshri J,Mankazana BB,Momba MN

    更新日期:2015-04-01 00:00:00

  • Identification of a gene from Streptomyces rimosus M527 negatively affecting rimocidin biosynthesis and morphological differentiation.

    abstract::The polyene macrolide rimocidin, produced by Streptomyces rimosus M527, was found to be highly effective against a broad range of fungal plant pathogens. Current understanding of the regulatory mechanism of rimocidin biosynthesis and morphological differentiation in S. rimosus M527 is limited. NsdA is considered a neg...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-020-10955-8

    authors: Liao Z,Song Z,Xu J,Ma Z,Bechthold A,Yu X

    更新日期:2020-12-01 00:00:00

  • Synergistic proteins for the enhanced enzymatic hydrolysis of cellulose by cellulase.

    abstract::Reducing the enzyme loadings for enzymatic saccharification of lignocellulose is required for economically feasible production of biofuels and biochemicals. One strategy is addition of small amounts of synergistic proteins to cellulase mixtures. Synergistic proteins increase the activity of cellulase without causing s...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章,评审

    doi:10.1007/s00253-014-6001-3

    authors: Kim IJ,Lee HJ,Choi IG,Kim KH

    更新日期:2014-10-01 00:00:00

  • In vitro propagation and cell cultures of memory tonic herb Evolvulus alsinoides: a best source for elicited production of scopoletin.

    abstract::Evolvulus alsinoides L. is used for preparation of 'Shankhapushpi', an important popular ayurvedic drug that contributes considerably to the improvement of memory power. The improvement is attributed to the presence of furanocoumarin scopoletin, a metabolite with a wide range of biological activities. This report desc...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-015-7153-5

    authors: Naikawadi VB,Ahire ML,Lahiri A,Nikam TD

    更新日期:2016-04-01 00:00:00

  • Metabolic engineering of Clostridium tyrobutyricum for n-butanol production from sugarcane juice.

    abstract::Clostridium tyrobutyricum is a promising organism for butyrate and n-butanol production, but cannot grow on sucrose. Three genes (scrA, scrB, and scrK) involved in the sucrose catabolic pathway, along with an aldehyde/alcohol dehydrogenase gene, were cloned from Clostridium acetobutylicum and introduced into C. tyrobu...

    journal_title:Applied microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.1007/s00253-017-8200-1

    authors: Zhang J,Yu L,Xu M,Yang ST,Yan Q,Lin M,Tang IC

    更新日期:2017-05-01 00:00:00