Mapping of the red clover necrotic mosaic virus subgenomic RNA.

Abstract:

:The red clover necrotic mosaic dianthovirus capsid protein is expressed in vivo from a subgenomic RNA (sgRNA) identical to the 3'-terminal 1.5 kb of RNA-1. The 5' leader sequence of the capsid protein sgRNA is 62 nucleotides, contains a 14-nucleotide putative promoter sequence homologous to the RNA-1 5' terminus, and exhibits a high level of similarity with the tobacco mosaic virus 5' leader translational enhancer element omega. Analysis of the RNA-1 secondary structure, in the region adjacent to the position where the 5' end of the sgRNA was mapped, predicts a stable stem-loop which includes the putative sgRNA promoter element. It is suggested that this structure is important for recognition of the sgRNA transcriptional initiation from the full-length negative-sense RNA-1.

journal_name

Virology

journal_title

Virology

authors

Zavriev SK,Hickey CM,Lommel SA

doi

10.1006/viro.1996.0076

subject

Has Abstract

pub_date

1996-02-15 00:00:00

pages

407-10

issue

2

eissn

0042-6822

issn

1096-0341

pii

S0042-6822(96)90076-8

journal_volume

216

pub_type

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