Chromosomal microarray impacts clinical management.

Abstract:

:Chromosomal microarray analysis (CMA) is standard of care, first-tier clinical testing for detection of genomic copy number variation among patients with developmental disabilities. Although diagnostic yield is higher than traditional cytogenetic testing, management impact has not been well studied. We surveyed genetic services providers regarding CMA ordering practices and perceptions about reimbursement. Lack of insurance coverage because of perceived lack of clinical utility was cited among the most frequent reasons why CMA was not ordered when warranted. We compiled a list of genomic regions where haploinsufficiency or triplosensitivity cause genetic conditions with documented management recommendations, estimating that at least 146 conditions potentially diagnosable by CMA testing have published literature supporting specific clinical management implications. Comparison with an existing clinical CMA database to determine the proportion of cases involving these regions showed that CMA diagnoses associated with such recommendations are found in approximately 7% of all cases (n = 28,526). We conclude that CMA impacts clinical management at a rate similar to other genetic tests for which insurance coverage is more readily approved. The information presented here can be used to address barriers that continue to contribute to inequities in patient access and care in regard to CMA testing.

journal_name

Clin Genet

journal_title

Clinical genetics

authors

Riggs ER,Wain KE,Riethmaier D,Smith-Packard B,Faucett WA,Hoppman N,Thorland EC,Patel VC,Miller DT

doi

10.1111/cge.12107

subject

Has Abstract

pub_date

2014-02-01 00:00:00

pages

147-53

issue

2

eissn

0009-9163

issn

1399-0004

journal_volume

85

pub_type

杂志文章
  • Cytogenetic analysis of 23 Japanese patients with amyotrophic lateral sclerosis.

    abstract::The cytogenetic analysis of 23 Japanese patients with amyotrophic lateral sclerosis is reported. G-banded chromosomes of cultured peripheral blood lymphocytes of one subject had a constitutional chromosomal translocation, t(7;13)(p22;q21). No constitutional chromosome abnormality was found in any of the other 22 Japan...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/j.1399-0004.1995.tb03950.x

    authors: Kaneko K,Saito F,Sunohara N,Ikeuchi T

    更新日期:1995-03-01 00:00:00

  • Novel mutations in the CHST6 gene causing macular corneal dystrophy.

    abstract::Macular corneal dystrophy (MCD) is an autosomal recessive disease characterized by corneal opacities and caused by mutations in a carbohydrate sulfotransferase gene, known as CHST6. MCD type I patients show missense mutations in the CHST6-coding region, and MCD type II patients show a large deletion and replacement in...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/j.0009-9163.2004.00191.x

    authors: Abbruzzese C,Kuhn U,Molina F,Rama P,De Luca M

    更新日期:2004-02-01 00:00:00

  • Three successive prenatal diagnoses of 47,XY,+21.

    abstract::Within 3 working days in September, 1974, we made three prenatal diagnoses of 47,XY,+21 from three women of advanced maternal age. Two were 37 and 38 years old, respectively, and nulliparous. One was 42 years old and had four normal children. The possibility of cell contamination arose when the second diagnosis of tri...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/j.1399-0004.1976.tb02270.x

    authors: Hsu LY,Godmilow L,Serotkiq AV,Hirschhorn K

    更新日期:1976-04-01 00:00:00

  • A population-based study of hereditary non-polyposis colorectal cancer: evidence of pathologic and genetic heterogeneity.

    abstract::Hereditary non-polyposis colorectal cancer (HNPCC) may be the result of Lynch syndrome (LS) caused by mutations in mismatch repair (MMR) genes, a syndrome of unknown etiology called familial colorectal cancer type-X (FCCTX), or familial serrated neoplasia associated with the colorectal cancer (CRC) somatic BRAF mutati...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/cge.12080

    authors: Warden G,Harnett D,Green J,Wish T,Woods MO,Green R,Dicks E,Rahman P,Zhai G,Parfrey P

    更新日期:2013-12-01 00:00:00

  • Cross-sectional assessment of pain and physical function in skeletal dysplasia patients.

    abstract::Short stature skeletal dysplasia (SD) patients have orthopedic and neurologic complications causing significant pain and physical disability. We conducted a large cross-sectional online survey in 361 people with short stature SD (>10 years) to describe pain prevalence, characteristics, and the relationship between pai...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/cge.12045

    authors: Alade Y,Tunkel D,Schulze K,McGready J,Jallo G,Ain M,Yost T,Hoover-Fong J

    更新日期:2013-09-01 00:00:00

  • Maternal genetic polymorphisms and unexplained recurrent miscarriage: a systematic review and meta-analysis.

    abstract::The roles of genetic polymorphisms in the pathogenesis of recurrent miscarriage (RM) have been intensively studied. However, the results of these studies were inconsistent, especially when conducted in different populations. Therefore, we performed the current study to systematically review the broad spectrum of genet...

    journal_title:Clinical genetics

    pub_type: 杂志文章,meta分析,评审

    doi:10.1111/cge.12910

    authors: Shi X,Xie X,Jia Y,Li S

    更新日期:2017-02-01 00:00:00

  • Correlation between genotype and phenotype in patients with bi-allelic SLC26A4 mutations.

    abstract::Mutation of SLC26A4 is the most common cause of prelingual hearing loss in East Asia. Patients with SLC26A4 mutations have variable phenotypes ranging from non-syndromic hearing loss to Pendred syndrome. Here, we analyzed the correlation between genotype and various inner ear phenotypes and found a possible underlying...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/cge.12273

    authors: Lee HJ,Jung J,Shin JW,Song MH,Kim SH,Lee JH,Lee KA,Shin S,Kim UK,Bok J,Lee KY,Choi JY,Park HJ

    更新日期:2014-09-01 00:00:00

  • Interstitial 6q deletion and Prader-Willi-like phenotype.

    abstract::A third case of an interstitial deletion of the long arm of chromosome 6 with clinical features mimicking Prader-Willi syndrome (PWS) is presented. Although preliminary clinical evaluation in each case suggested PWS, further review revealed that the features in all three cases are not completely compatible with the ch...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/j.1399-0004.1996.tb03794.x

    authors: Stein CK,Stred SE,Thomson LL,Smith FC,Hoo JJ

    更新日期:1996-06-01 00:00:00

  • Interaction between SREBP-1a and APOB polymorphisms influences total and low-density lipoprotein cholesterol levels in patients with coronary artery disease.

    abstract::In this study, we examined the insertion/deletion (Ins/Del) and XbaI polymorphisms of the apolipoprotein B (APOB) gene and the -36delG polymorphism in the sterol regulatory element binding protein-1a (SREBP-1a) gene in 298 patients with non-diabetic angiographically assessed coronary artery disease (CAD), and 188 heal...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1034/j.1399-0004.2003.00057.x

    authors: Rios DL,Vargas AF,Torres MR,Zago AJ,Callegari-Jacques SM,Hutz MH

    更新日期:2003-05-01 00:00:00

  • An HLA-All association with the hemochromatosis allele?

    abstract::Two hundred and seventy-four patients with hemochromatosis and 1005 controls were HLA-typed, and HLA haplotypes were determined for 163 patients and 123 controls. The increased frequency of antigen A3 and haplotypes A3, B7 and A3, B14 in patients with hemochromatosis was confirmed. After correction for the space taken...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/j.1399-0004.1983.tb02234.x

    authors: Le Mignon L,Simon M,Fauchet R,Edan G,Le Reun M,Brissot P,Genetet B,Bourel M

    更新日期:1983-09-01 00:00:00

  • Metachromatic leukodystrophy in Greece: observations on 4 cases.

    abstract::We report our findings in four cases of metachromatic leukodystrophy diagnosed in Greece during the last 4 years. The age of onset and the clinical symptoms were those described for the late infantile form of the disease. However, one patient retained his speech and mental abilities despite his pronounced motor regres...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/j.1399-0004.1990.tb03387.x

    authors: Michelakakis H,Dimitriou E,Bartsocas C,Skardoutsou A,Giouroukos S

    更新日期:1990-01-01 00:00:00

  • Uncertainty, hope, and coping efficacy among mothers of children with Duchenne/Becker muscular dystrophy.

    abstract::Uncertainty is a challenging aspect of caring for children with Duchenne/Becker muscular dystrophies (DBMD). Although uncertainty is often perceived as a state to be avoided, hope may influence caregivers' perceptions of uncertainty as opportunity. The goal of this cross-sectional quantitative study was to pilot a nov...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/cge.13528

    authors: Bell M,Biesecker BB,Bodurtha J,Peay HL

    更新日期:2019-06-01 00:00:00

  • Reduced plasma concentrations of total, low density lipoprotein and high density lipoprotein cholesterol in patients with Gaucher type I disease.

    abstract::Plasma lipid and serum apoprotein concentrations were determined in twenty-nine individuals with Gaucher type I disease. Plasma total cholesterol, low density lipoprotein (LDL) cholesterol and high density lipoprotein (HDL) cholesterol were all significantly reduced in the patients with Gaucher disease compared to a g...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/j.1399-0004.1984.tb00799.x

    authors: Ginsberg H,Grabowski GA,Gibson JC,Fagerstrom R,Goldblatt J,Gilbert HS,Desnick RJ

    更新日期:1984-08-01 00:00:00

  • Vestibular phenotype-genotype correlation in a cohort of 90 patients with Usher syndrome.

    abstract::Usher syndrome has been historically categorized into one of three classical types based on the patient phenotype. However, the vestibular phenotype does not infallibly predict which Usher genes are mutated. Conversely, the Usher syndrome genotype is not sufficient to reliably predict vestibular function. Here we pres...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/cge.13868

    authors: Wafa TT,Faridi R,King KA,Zalewski C,Yousaf R,Schultz JM,Morell RJ,Muskett J,Turriff A,Tsilou E,Griffith AJ,Friedman TB,Zein WM,Brewer CC

    更新日期:2021-02-01 00:00:00

  • Pigmentary dysplasias in long survivors with mosaic trisomy 18: report of two cases.

    abstract::We describe two patients, a 19-year-old girl and a 19-year-old boy, with mosaic trisomy 18 and pigmentary dysplasias. Both patients had profound growth and mental retardation, marked kyphoscoliosis, bushy eyebrows, bulbous nose, simple ears, and joint contractures - clinical manifestations of long survivors with mosai...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/j.1399-0004.1991.tb02988.x

    authors: Murano I,Ohashi H,Tsukahara M,Tonoki H,Okino F,Atsumi M,Kajii T

    更新日期:1991-01-01 00:00:00

  • Exclusion mapping of the Cohen syndrome gene from the Prader-Willi syndrome locus.

    abstract::Karyotype and DNA analyses using DNA probes were carried out in a family with the Cohen syndrome. Two affected brothers had normal chromosomal constitutions. A major deletion or duplication of genomic DNA fragments hybridized with the DNA probes, pML34 at D15S9 locus and pTD3-21 at D15S10 locus, assigned on 15q11-q12 ...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/j.1399-0004.1990.tb03607.x

    authors: Kondo I,Hamabe J,Yamamoto K,Niikawa N

    更新日期:1990-12-01 00:00:00

  • Association of genetic polymorphisms of de novo nucleotide biosynthesis with increased CHD susceptibility in the northern Chinese population.

    abstract::Congenital heart disease (CHD) is one of most prevalent birth defects in the world. However, the underlying molecular mechanism(s) have not been fully understood. Here we report that increased CHD susceptibility is associated with genetic polymorphisms for de novo nucleotide biosynthesis in northern Chinese population...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/cge.12874

    authors: Jiang YC,Kuang LL,Sun SN,Duan WY,Qiao B,Wang HY

    更新日期:2017-05-01 00:00:00

  • The impact of familial environment on depression scores after genetic testing for cancer susceptibility.

    abstract::The associations between characteristics of family relationships and family trends in cancer worry and the psychological adjustment of recipients of genetic testing for cancer susceptibility were investigated. Data provided by 178 individuals from 24 families with Lynch syndrome who participated in a cohort study inve...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/j.1399-0004.2008.01104.x

    authors: Ashida S,Hadley DW,Vaughn BK,Kuhn NR,Jenkins JF,Koehly LM

    更新日期:2009-01-01 00:00:00

  • Pancreatic cancer genomics: where can the science take us?

    abstract::The incidence of pancreatic ductal adenocarcinoma (PDAC) is steadily increasing and the annual death-to-incidence ratio approaches one. This is a figure that has not changed for several decades. Surgery remains the only chance of cure; however, only less than 20% of patients are amenable to operative resection. Despit...

    journal_title:Clinical genetics

    pub_type: 杂志文章,评审

    doi:10.1111/cge.12536

    authors: Graham JS,Jamieson NB,Rulach R,Grimmond SM,Chang DK,Biankin AV

    更新日期:2015-09-01 00:00:00

  • The Myhre syndrome: report of two cases.

    abstract::Two unrelated patients, aged 19 and 6 years, were studied and diagnosed as having Myhre syndrome (MS). This review, together with three previous cases, permits further delineation of MS. The main features are: short stature, mental retardation, blepharophimosis, muscular hypertrophy, decreased joint mobility, thick ca...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/j.1399-0004.1993.tb03880.x

    authors: García-Cruz D,Figuera LE,Feria-Velazco A,Sánchez-Corona J,García-Cruz MO,Ramírez-Duenãs RM,Hernandez-Córdova A,Ruiz MX,Bitar-Alatorre WE,Ramírez-Dueñas ML

    更新日期:1993-10-01 00:00:00

  • Low mutation rate of hMSH2 and hMLH1 in Taiwanese hereditary non-polyposis colorectal cancer.

    abstract::Hereditary non-polyposis colorectal cancer (HNPCC), the most common type of hereditary colorectal cancer, is thought to be a simple Mendelian disease involving DNA mismatch repair genes. The majority of mutations associated with HNPCC occur in the hMSH2 and hMLH1 genes. The reported incidence of mismatch repair gene m...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1034/j.1399-0004.2003.00123.x

    authors: Wei SC,Yu CY,Tsai-Wu JJ,Su YN,Sheu JC,Wu CH,Wang CY,Wong JM

    更新日期:2003-09-01 00:00:00

  • Missing heritability in Bloom syndrome: First report of a deep intronic variant leading to pseudo-exon activation in the BLM gene.

    abstract::Pathogenic biallelic variants in the BLM/RECQL3 gene cause a rare autosomal recessive disorder called Bloom syndrome (BS). This syndrome is characterized by severe growth delay, immunodeficiency, dermatological manifestations and a predisposition to a wide variety of cancers, often multiple and very early in life. Lit...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/cge.13859

    authors: Backers L,Parton B,De Bruyne M,Tavernier SJ,Van Den Bogaert K,Lambrecht BN,Haerynck F,Claes KBM

    更新日期:2021-02-01 00:00:00

  • Gaucher's disease: identification of novel mutant alleles and genotype-phenotype relationships.

    abstract::A sequencing protocol for the acid beta-glucosidase (GCase) gene (GBA) was developed using a long-range PCR template. This protocol has an advantage of greater DNA yields over similar strategies. Seven Gaucher's disease patients had four novel and five other rare alleles. A non-pseudogene in-frame deletion (g.2600-260...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1034/j.1399-0004.2003.00100.x

    authors: Zhao H,Keddache M,Bailey L,Arnold G,Grabowski G

    更新日期:2003-07-01 00:00:00

  • Genetic counselling in hypomelanosis of Ito: case report and review.

    abstract::A 27-year-old male with hypomelanosis of Ito (HI) is reported. One of his two children had a postaxial ray defect of one leg but neither had cutaneous features of HI. Somatic mosaicism for a gene defect lethal to ectodermal derivatives offers the best explanation for HI in males, with consequent negligible recurrence ...

    journal_title:Clinical genetics

    pub_type: 杂志文章,评审

    doi:10.1111/j.1399-0004.1988.tb02845.x

    authors: Moss C,Burn J

    更新日期:1988-08-01 00:00:00

  • Familial short atrioventricular conduction time (P-R interval).

    abstract::Five sibs with related parents are presented. All the sibs have short atrioventricular conduction time (P-R interval). The short P-R interval is probably an inherited feature in the family. ...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:

    authors: Möller P

    更新日期:1976-08-01 00:00:00

  • Transcobalamins in the etiology of neural tube defects.

    abstract::In a sample of 79 pregnant women at risk offspring with neural tube defects (NTDs) and 158 controls, significantly increased median values were found for apo-transcobalamins I and II in amniotic fluid in the group at risk, thus confirming previous results. The findings may reflect a genetic disposition to NTDs associa...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/j.1399-0004.1991.tb03032.x

    authors: Magnus P,Magnus EM,Berg K

    更新日期:1991-04-01 00:00:00

  • Mitochondrial GTPase mitofusin 2 mutations in Korean patients with Charcot-Marie-Tooth neuropathy type 2.

    abstract::Charcot-Marie-Tooth disease (CMT) is classified into two types, the demyelinating (CMT1) and axonal forms (CMT2). CMT2 is further subdivided by linkage analysis into eight subgroups. Recently, mutations in the MFN2 gene, which encodes the mitochondrial GTPase mitofusin 2 (Mfn2) that regulates the mitochondrial network...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/j.1399-0004.2007.00763.x

    authors: Cho HJ,Sung DH,Kim BJ,Ki CS

    更新日期:2007-03-01 00:00:00

  • Fetal growth patterns in Beckwith-Wiedemann syndrome.

    abstract::We provide data on fetal growth pattern on the molecular subtypes of Beckwith-Wiedemann syndrome (BWS): IC1 gain of methylation (IC1-GoM), IC2 loss of methylation (IC2-LoM), 11p15.5 paternal uniparental disomy (UPD), and CDKN1C mutation. In this observational study, gestational ages and neonatal growth parameters of 2...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/cge.12759

    authors: Mussa A,Russo S,de Crescenzo A,Freschi A,Calzari L,Maitz S,Macchiaiolo M,Molinatto C,Baldassarre G,Mariani M,Tarani L,Bedeschi MF,Milani D,Melis D,Bartuli A,Cubellis MV,Selicorni A,Silengo MC,Larizza L,Riccio A,Fe

    更新日期:2016-07-01 00:00:00

  • Erythropoietic protoporphyria a clinical and molecular study from Lebanon: Ferrochelatase a potential tumor suppressor gene in colon cancer.

    abstract::Erythropoietic protoporphyria (EPP) is a rare cutaneous and systemic disease caused by mutations in the ferrochelatase gene (FECH). The molecular underpinnings of EPP in Middle Eastern populations and relative to other ethnic groups secondary to increased consanguinity are unknown. To understand the molecular pathogen...

    journal_title:Clinical genetics

    pub_type: 杂志文章

    doi:10.1111/cge.12968

    authors: Kadara H,Nemer G,Safi R,Rebeiz N,Daou L,Delbani D,Btadini W,Abbas O,Tofaili M,Bitar F,Kibbi AG,Shimomura Y,Kurban M

    更新日期:2017-11-01 00:00:00

  • Severe congenital encephalopathy caused by MECP2 null mutations in males: central hypoxia and reduced neuronal dendritic structure.

    abstract::Non-mosaic males with a 46,XY karyotype and a MECP2 null mutation display a phenotype of severe neonatal-onset encephalopathy that is distinctly different from Rett syndrome (RTT). To increase awareness of this rare disorder, we are reporting novel findings in a sporadic case, compare them to 16 previously reported ca...

    journal_title:Clinical genetics

    pub_type: 杂志文章,评审

    doi:10.1111/j.1399-0004.2008.01005.x

    authors: Schüle B,Armstrong DD,Vogel H,Oviedo A,Francke U

    更新日期:2008-08-01 00:00:00