Theory and practical recommendations for autocorrelation-based image correlation spectroscopy.

Abstract:

:Image correlation spectroscopy (ICS) is a powerful technique for detecting arrangement of fluorophores in images. This tutorial gives background into the mathematical underpinnings of ICS, specifically image autocorrelation. The effects of various artifacts and image processing steps, including background subtraction, noise, and image morphology were examined analytically and their effects on ICS analysis modeled. A series of recommendations was built based on this analysis.

journal_name

J Biomed Opt

authors

Robertson C,George SC

doi

10.1117/1.JBO.17.8.080801

subject

Has Abstract

pub_date

2012-08-01 00:00:00

pages

080801-1

issue

8

eissn

1083-3668

issn

1560-2281

pii

1352553

journal_volume

17

pub_type

杂志文章
  • Imaging caries lesions and lesion progression with polarization sensitive optical coherence tomography.

    abstract::New diagnostic tools are needed for the characterization of dental caries in the early stages of development. If carious lesions are detected early enough, they can be arrested without the need for surgical intervention. The objective of this study was to demonstrate that polarization sensitive optical coherence tomog...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.1509752

    authors: Fried D,Xie J,Shafi S,Featherstone JD,Breunig TM,Le C

    更新日期:2002-10-01 00:00:00

  • Real-time microscopic visualization of tissue response to laser thermal therapy.

    abstract::We present methods for visualizing the dynamic response of biological samples to laser-induced heating. Our approach utilizes optical frequency-domain imaging to detect, spatially localize, and monitor unique dynamic signatures that arise within zones of active tissue denaturation. Since this information is precisely ...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.2714027

    authors: Vakoc BJ,Tearney GJ,Bouma BE

    更新日期:2007-03-01 00:00:00

  • Infrared spectroscopic analysis of human and bovine articular cartilage proteoglycans using carbohydrate peak or its second derivative.

    abstract::Fourier transform infrared (FTIR) microspectroscopy has been used to estimate the spatial proteoglycan (PG) and collagen contents in articular cartilage (AC). However, it is not clear whether the results of FTIR analyses are consistent between different species. Our aim was to clarify how three different FTIR PG param...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.18.9.097006

    authors: Rieppo L,Närhi T,Helminen HJ,Jurvelin JS,Saarakkala S,Rieppo J

    更新日期:2013-09-01 00:00:00

  • Photochemical decontamination of red cell concentrates with the silicon phthalocyanine pc 4 and red light.

    abstract::Virus inactivation in red blood cell concentrates (RBCC) is being studied in order to increase the safety of the blood supply. For this purpose we have been studying the silicon phthalocyanine (Pc 4), a photosensitizer activated with red light. Two approaches were used to achieve enhanced selectivity of Pc 4 for virus...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.429931

    authors: Ben-Hur E,Zuk MM,Oetjen J,Chan WS,Lenny L,Horowitz B

    更新日期:1999-07-01 00:00:00

  • Precision and Reproducibility of Measurements of Human Corneal Thickness with Rapid Optical Low-Coherence Reflectometry (OLCR).

    abstract::This study investigates the precision and intraindividual variability of a clinical optical pachometer based on low-coherence reflectometry, which was used to measure the central thickness of a human cornea in vivo. The instrument, attached to a slit lamp, is a single mode fiber optic based Michelson interferometer wi...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.429901

    authors: Bo Hnke M,Masters BR,Wa Lti R,Ballif JJ,Chavanne P,Gianotti R,Salathe RP

    更新日期:1999-01-01 00:00:00

  • Fluorescence microscopy imaging of electroperturbation in mammalian cells.

    abstract::We report the design, integration, and validation of a fluorescence microscopy system for imaging of electroperturbation--the effects of nanosecond, megavolt-per-meter pulsed electric fields on biological cells and tissues. Such effects have potential applications in cancer therapy, gene regulation, and biophysical re...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.2187970

    authors: Sun Y,Vernier PT,Behrend M,Wang J,Thu MM,Gundersen M,Marcu L

    更新日期:2006-03-01 00:00:00

  • High-spatial-resolution deep tissue imaging with spectral-domain optical coherence microscopy in the 1700-nm spectral band.

    abstract::We present three-dimensional (3-D) high-resolution spectral-domain optical coherence microscopy (SD-OCM) by using a supercontinuum (SC) fiber laser source with 300-nm spectral bandwidth (full-width at half-maximum) in the 1700-nm spectral band. By using low-coherence interferometry with SC light and a confocal detecti...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.24.7.070502

    authors: Yamanaka M,Hayakawa N,Nishizawa N

    更新日期:2019-07-01 00:00:00

  • Spectrally resolved fluorescence lifetime imaging to investigate cell metabolism in malignant and nonmalignant oral mucosa cells.

    abstract::Fluorescence-guided diagnosis of tumor tissue is in many cases insufficient, because false positive results interfere with the outcome. Improvement through observation of cell metabolism might offer the solution, but needs a detailed understanding of the origin of autofluorescence. With respect to this, spectrally res...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.19.9.096005

    authors: Rück A,Hauser C,Mosch S,Kalinina S

    更新日期:2014-09-01 00:00:00

  • Implantable photonic devices for improved medical treatments.

    abstract::An evolving area of biomedical research is related to the creation of implantable units that provide various possibilities for imaging, measurement, and the monitoring of a wide range of diseases and intrabody phototherapy. The units can be autonomic or built-in in some kind of clinically applicable implants. Because ...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.19.10.108001

    authors: Sheinman V,Rudnitsky A,Toichuev R,Eshiev A,Abdullaeva S,Egemkulov T,Zalevsky Z

    更新日期:2014-01-01 00:00:00

  • Comparison of time-resolved and continuous-wave near-infrared techniques for measuring cerebral blood flow in piglets.

    abstract::A primary focus of neurointensive care is monitoring the injured brain to detect harmful events that can impair cerebral blood flow (CBF), resulting in further injury. Since current noninvasive methods used in the clinic can only assess blood flow indirectly, the goal of this research is to develop an optical techniqu...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.3488626

    authors: Diop M,Tichauer KM,Elliott JT,Migueis M,Lee TY,St Lawrence K

    更新日期:2010-09-01 00:00:00

  • Diffuse reflectance spectroscopy as a tool for real-time tissue assessment during colorectal cancer surgery.

    abstract::Colorectal surgery is the standard treatment for patients with colorectal cancer. To overcome two of the main challenges, the circumferential resection margin and postoperative complications, real-time tissue assessment could be of great benefit during surgery. In this ex vivo study, diffuse reflectance spectroscopy (...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.22.10.106014

    authors: Baltussen EJM,Snaebjornsson P,de Koning SGB,Sterenborg HJCM,Aalbers AGJ,Kok N,Beets GL,Hendriks BHW,Kuhlmann KFD,Ruers TJM

    更新日期:2017-10-01 00:00:00

  • Depth profiling of photothermal compound concentrations using phase sensitive optical coherence tomography.

    abstract::A model that describes the concentration of photothermal (light-to-heat converters) compounds as a function of depth in a turbid medium is developed. The system consists of a pump laser (808 nm modulated at 400 Hz), which heats a photothermal compound, and a phase sensitive spectral domain optical coherence tomography...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.3659211

    authors: Guan G,Reif R,Huang Z,Wang RK

    更新日期:2011-12-01 00:00:00

  • Time-dependent blood flow and oxygenation in human skeletal muscles measured with noninvasive near-infrared diffuse optical spectroscopies.

    abstract::We have employed near-infrared optical methods to measure noninvasively the dynamics of muscle blood flow and oxygen saturation (StO2) during cuff occlusion and plantar flexion exercise. Relative muscle oxygen consumption (rVO2) was also computed from these data. Diffuse correlation spectroscopy provides information a...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.1884603

    authors: Yu G,Durduran T,Lech G,Zhou C,Chance B,Mohler ER 3rd,Yodh AG

    更新日期:2005-03-01 00:00:00

  • Two-photon imaging using adaptive phase compensated ultrashort laser pulses.

    abstract::An adaptive pulse shaper controlled by multiphoton intrapulse interference phase scanning (MIIPS) was used, together with a prism-pair, to measure and cancel high-order phase distortions introduced by a high-numerical-aperture objective and other dispersive elements of a two-photon laser-scanning microscope. The deliv...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.3059629

    authors: Xi P,Andegeko Y,Pestov D,Lovozoy VV,Dantus M

    更新日期:2009-01-01 00:00:00

  • Distinguishing tracheal and esophageal tissues with hyperspectral imaging and fiber-optic sensing.

    abstract::During emergency medical situations, where the patient has an obstructed airway or necessitates respiratory support, endotracheal intubation (ETI) is the medical technique of placing a tube into the trachea in order to facilitate adequate ventilation of the lungs. Complications during ETI, such as repeated attempts, f...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.21.11.117004

    authors: Nawn CD,Souhan BE,Carter R 3rd,Kneapler C,Fell N,Ye JY

    更新日期:2016-11-01 00:00:00

  • Filter-based method for background removal in high-sensitivity wide-field-surface-enhanced Raman scattering imaging in vivo.

    abstract::As molecular imaging moves towards lower detection limits, the elimination of endogenous background signals becomes imperative. We present a facile background-suppression technique that specifically segregates the signal from surface-enhanced Raman scattering (SERS)-active nanoparticles (NPs) from the tissue autofluor...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.17.7.076017

    authors: Mallia RJ,McVeigh PZ,Veilleux I,Wilson BC

    更新日期:2012-07-01 00:00:00

  • Early detection of high-grade squamous intraepithelial lesions in the cervix with quantitative spectroscopic imaging.

    abstract::Quantitative spectroscopy has recently been extended from a contact-probe to wide-area spectroscopic imaging to enable mapping of optical properties across a wide area of tissue. We train quantitative spectroscopic imaging (QSI) to identify cervical high-grade squamous intraepithelial lesions (HSILs) in 34 subjects un...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.18.7.076013

    authors: Lau C,Mirkovic J,Yu CC,O'Donoghue GP,Galindo L,Dasari R,de las Morenas A,Feld M,Stier E

    更新日期:2013-07-01 00:00:00

  • Real-time intraoperative fluorescence imaging system using light-absorption correction.

    abstract::We present a novel fluorescence imaging system developed for real-time interventional imaging applications. The system implements a correction scheme that improves the accuracy of epi-illumination fluorescence images for light intensity variation in tissues. The implementation is based on the use of three cameras oper...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.3259362

    authors: Themelis G,Yoo JS,Soh KS,Schulz R,Ntziachristos V

    更新日期:2009-11-01 00:00:00

  • Enhancement factor in low-coherence enhanced backscattering and its applications for characterizing experimental skin carcinogenesis.

    abstract::We experimentally study potential mechanisms by which the enhancement factor in low-coherence enhanced backscattering (LEBS) can probe subtle variations in radial intensity distribution in weakly scattering media. We use enhanced backscattering of light by implementing either (1) low spatial coherence illumination or ...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.3443795

    authors: Liu J,Xu Z,Song Q,Konger RL,Kim YL

    更新日期:2010-05-01 00:00:00

  • Rab4 and Rab11 coordinately regulate the recycling of angiotensin II type I receptor as demonstrated by fluorescence resonance energy transfer microscopy.

    abstract::The recycling of G-protein-coupled receptors (GPCR) to the cell surface after internalization plays an important role in the regulation of overall GPCR activity. The angiotensin II type I receptor (AT1R) belongs to class B GPCRs that recycle slowly back to the cell surface. Previous studies have proposed that Rab11 co...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.2943286

    authors: Li H,Li HF,Felder RA,Periasamy A,Jose PA

    更新日期:2008-05-01 00:00:00

  • Holographic laser Doppler imaging of pulsatile blood flow.

    abstract::We report on wide-field imaging of pulsatile motion induced by blood flow using heterodyne holographic interferometry on the thumb of a healthy volunteer, in real time. Optical Doppler images were measured with green laser light by a frequency-shifted Mach-Zehnder interferometer in off-axis configuration. The recorded...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.20.6.066006

    authors: Bencteux J,Pagnoux P,Kostas T,Bayat S,Atlan M

    更新日期:2015-06-01 00:00:00

  • Tumor-associated macrophages and stromal TNF-α regulate collagen structure in a breast tumor model as visualized by second harmonic generation.

    abstract::Collagen fibers can be imaged with second harmonic generation (SHG) and are associated with efficient tumor cell locomotion. Preferential locomotion along these fibers correlates with a more aggressively metastatic phenotype, and changes in SHG emission properties accompany changes in metastatic outcome. We therefore ...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.18.8.086003

    authors: Burke RM,Madden KS,Perry SW,Zettel ML,Brown EB 3rd

    更新日期:2013-08-01 00:00:00

  • Three-dimensional optical coherence tomography at 1050 nm versus 800 nm in retinal pathologies: enhanced performance and choroidal penetration in cataract patients.

    abstract::Frequency domain optical coherence tomography (FD-OCT), based on an all-reflective high-speed InGaAs spectrometer, operating in the 1050 nm wavelength region for retinal diagnostics, enables high-speed, volumetric imaging of retinal pathologies with greater penetration into choroidal tissue is compared to conventional...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.2773728

    authors: Povazay B,Hermann B,Unterhuber A,Hofer B,Sattmann H,Zeiler F,Morgan JE,Falkner-Radler C,Glittenberg C,Blinder S,Drexler W

    更新日期:2007-07-01 00:00:00

  • Volumetric full-range magnetomotive optical coherence tomography.

    abstract::Magnetomotive optical coherence tomography (MM-OCT) can be utilized to spatially localize the presence of magnetic particles within tissues or organs. These magnetic particle-containing regions are detected by using the capability of OCT to measure small-scale displacements induced by the activation of an external ele...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.19.12.126001

    authors: Ahmad A,Kim J,Shemonski ND,Marjanovic M,Boppart SA

    更新日期:2014-12-01 00:00:00

  • Quantification of endocytosis using a folate functionalized silica hollow nanoshell platform.

    abstract::A quantification method to measure endocytosis was designed to assess cellular uptake and specificity of a targeting nanoparticle platform. A simple N -hydroxysuccinimide ester conjugation technique to functionalize 100-nm hollow silica nanoshell particles with fluorescent reporter fluorescein isothiocyanate and folat...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.20.8.088003

    authors: Sandoval S,Mendez N,Alfaro JG,Yang J,Aschemeyer S,Liberman A,Trogler WC,Kummel AC

    更新日期:2015-08-01 00:00:00

  • Toward the clinical application of time-domain fluorescence lifetime imaging.

    abstract::High-speed (video-rate) fluorescence lifetime imaging (FLIM) through a flexible endoscope is reported based on gated optical image intensifier technology. The optimization and potential application of FLIM to tissue autofluorescence for clinical applications are discussed. ...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.2102807

    authors: Munro I,McGinty J,Galletly N,Requejo-Isidro J,Lanigan PM,Elson DS,Dunsby C,Neil MA,Lever MJ,Stamp GW,French PM

    更新日期:2005-09-01 00:00:00

  • Near-infrared transmittance pulse oximetry with laser diodes.

    abstract::Pulse oximeters are widely used for noninvasive monitoring of oxygen saturation in arterial blood hemoglobin. We present a transmittance pulse oximetry system based on near-infrared (NIR) laser diodes (750 and 850 nm) for monitoring oxygen saturation of arterial blood hemoglobin. The pulse oximetry system is made up o...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.1578495

    authors: Lopez Silva SM,Dotor Castilla ML,Silveira Martin JP

    更新日期:2003-07-01 00:00:00

  • Fast vascular component of cortical spreading depression revealed in rats by blood pulsation imaging.

    abstract::Cortical spreading depression (CSD) is a slowly propagating wave of depolarization of neurons and glia and has a less characterized vascular component. CSD is a commonly used phenomenon to test new methods of live brain imaging. Application of a blood pulsations imaging (BPI) technique to study of CSD induced with hig...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.19.4.046011

    authors: Teplov V,Shatillo A,Nippolainen E,Gröhn O,Giniatullin R,Kamshilin AA

    更新日期:2014-04-01 00:00:00

  • System analysis of spatial frequency domain imaging for quantitative mapping of surgically resected breast tissues.

    abstract::The feasibility of spatial frequency domain imaging (SFDI) for breast surgical margin assessment was evaluated in tissue-simulating phantoms and in fully intact lumpectomy specimens at the time of surgery. Phantom data was evaluated according to contrast-detail resolution, quantitative accuracy and model-data goodness...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.18.3.036012

    authors: Laughney AM,Krishnaswamy V,Rice TB,Cuccia DJ,Barth RJ,Tromberg BJ,Paulsen KD,Pogue BW,Wells WA

    更新日期:2013-03-01 00:00:00

  • Characterization of natural and irradiated nails by means of the depolarization metrics.

    abstract::Mueller polarimetry is applied to study the samples of nails: natural (or reference) and irradiated to 2 Gy ionizing radiation dose. We measure the whole Mueller matrices of the samples as a function of the scattering angle at a wavelength of 632.8 nm. We apply depolarization analysis to measured Mueller matrices by c...

    journal_title:Journal of biomedical optics

    pub_type: 杂志文章

    doi:10.1117/1.JBO.21.7.071108

    authors: Savenkov S,Priezzhev A,Oberemok Y,Sholom S,Kolomiets I,Chunikhina K

    更新日期:2016-07-01 00:00:00