Abstract:
:A rapid fluorescence assay for G-quadruplex DNA cleavage was used to investigate the preference of TMPyP4 photochemical and Mn·TMPyP4 oxidative cleavage. Both agents most efficiently cleave the c-Myc promoter G-quadruplex. Direct PAGE analysis of selected assay samples showed that for a given cleavage agent, different cleavage products are formed from different G-quadruplex structures. Cleavage assays carried out in the presence of excess competitor nucleic acid structures revealed the binding selectivity of cleavage agents, while comparisons with duplex cleavage efficiency employing a dual-labeled hairpin oligonucleotide revealed neither agent prefers G-quadruplex over duplex substrates. Finally, this assay was used to identify the perylene diimide Tel11 as a photocleavage agent for the c-Myc G-quadruplex.
journal_name
Bioorg Med Chemjournal_title
Bioorganic & medicinal chemistryauthors
Schoonover M,Kerwin SMdoi
10.1016/j.bmc.2012.10.017subject
Has Abstractpub_date
2012-12-15 00:00:00pages
6904-18issue
24eissn
0968-0896issn
1464-3391pii
S0968-0896(12)00832-2journal_volume
20pub_type
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