DNA replication: failures and inverted fusions.

Abstract:

:DNA replication normally follows the rules passed down from Watson and Crick: the chromosome duplicates as dictated by its antiparallel strands, base-pairing and leading and lagging strand differences. Real-life replication is more complicated, fraught with perils posed by chromosome damage for one, and by transcription of genes and by other perils that disrupt progress of the DNA replication machinery. Understanding the replication fork, including DNA structures, associated replisome and its regulators, is key to understanding how cells overcome perils and minimize error. Replication fork error leads to genome rearrangements and, potentially, cell death. Interest in the replication fork and its errors has recently gained added interest by the results of deep sequencing studies of human genomes. Several pathologies are associated with sometimes-bizarre genome rearrangements suggestive of elaborate replication fork failures. To try and understand the links between the replication fork, its failure and genome rearrangements, we discuss here phases of fork behavior (stall, collapse, restart and fork failures leading to rearrangements) and analyze two examples of instability from our own studies; one in fission yeast and the other in budding yeast.

journal_name

Semin Cell Dev Biol

authors

Carr AM,Paek AL,Weinert T

doi

10.1016/j.semcdb.2011.10.008

subject

Has Abstract

pub_date

2011-10-01 00:00:00

pages

866-74

issue

8

eissn

1084-9521

issn

1096-3634

pii

S1084-9521(11)00187-X

journal_volume

22

pub_type

杂志文章,评审
  • Perinatal inflammation and adult psychopathology: From preclinical models to humans.

    abstract::Perinatal environment plays a crucial role in brain development and determines its function through life. Epidemiological studies and clinical reports link perinatal exposure to infection and/or immune activation to various psychiatric disorders. In addition, accumulating evidence from animal models shows that perinat...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2017.09.010

    authors: Depino AM

    更新日期:2018-05-01 00:00:00

  • Coral biomineralization: A focus on intra-skeletal organic matrix and calcification.

    abstract::In the recent years several papers and some reviews have dealt with characterization, localization and influence on the precipitation of calcium carbonate, of the organic matrix from scleractinian corals. In fact, it has been well established that coral calcification is a biological controlled process orchestrated in ...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2015.09.005

    authors: Falini G,Fermani S,Goffredo S

    更新日期:2015-10-01 00:00:00

  • Membrane fusion in muscle development and repair.

    abstract::Mature skeletal muscle forms from the fusion of skeletal muscle precursor cells, myoblasts. Myoblasts fuse to other myoblasts to generate multinucleate myotubes during myogenesis, and myoblasts also fuse to other myotubes during muscle growth and repair. Proteins within myoblasts and myotubes regulate complex processe...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2015.10.026

    authors: Demonbreun AR,Biersmith BH,McNally EM

    更新日期:2015-09-01 00:00:00

  • Zebrafish gastrulation movements: bridging cell and developmental biology.

    abstract::During vertebrate gastrulation, large cellular rearrangements lead to the formation of the three germ layers, ectoderm, mesoderm and endoderm. Zebrafish offer many genetic and experimental advantages for studying vertebrate gastrulation movements. For instance, several mutants, including silberblick, knypek and trilob...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1084952102001003

    authors: Heisenberg CP,Tada M

    更新日期:2002-12-01 00:00:00

  • Regulation of the blood-testis barrier.

    abstract::The purpose of this review is to describe the endocrine and local testicular factors that contribute to the regulation of the blood-testis barrier (BTB), using information gained from in vivo and in vitro models of BTB formation during/after puberty, and from the maintenance of BTB function during adulthood. In vivo t...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2016.06.018

    authors: Stanton PG

    更新日期:2016-11-01 00:00:00

  • Molecular features of lipid-based antigen presentation by group 1 CD1 molecules.

    abstract::Lipids are now widely considered to play a variety of important roles in T-cell mediated immunity, including serving as antigens. Lipid-based antigens are presented by a specialised group of glycoproteins termed CD1. In humans, three classes of CD1 molecules exist: group 1 (CD1a, CD1b, CD1c), group 2 (CD1d), and group...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2017.11.002

    authors: Le Nours J,Shahine A,Gras S

    更新日期:2018-12-01 00:00:00

  • The toll-like receptor 3 pathway in homeostasis, responses to injury and wound repair.

    abstract::In addition to their established roles in host defence, Toll-like Receptors (TLRs) have emerging roles in control of homeostasis, injury and wound repair. The dsRNA-sensing receptor, TLR3, has been particularly implicated in such processes in several different tissues including the skin, intestine and liver, as well a...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2016.08.014

    authors: Ramnath D,Powell EE,Scholz GM,Sweet MJ

    更新日期:2017-01-01 00:00:00

  • The nuclear transport machinery as a regulator of Drosophila development.

    abstract::The developmental processes that give rise to the animal body plan are exceedingly complex. Model systems such as Drosophila melanogaster have yielded profound insight into roles of conserved genes and genetic pathways in development. Drosophila development begins with the formation of sperm and eggs, and proceeds thr...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2009.02.006

    authors: Mason DA,Goldfarb DS

    更新日期:2009-07-01 00:00:00

  • Tissue transplantation in planarians: A useful tool for molecular analysis of pattern formation.

    abstract::Freshwater planarians are well known for their remarkable plasticity and regenerative capabilities. Most studies of planarian regeneration have specifically examined regeneration after transverse or longitudinal sectioning or during homeostasis in intact adults. However, tissue transplantation, first performed over a ...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2018.05.022

    authors: Rojo-Laguna JI,Garcia-Cabot S,Saló E

    更新日期:2019-03-01 00:00:00

  • ALS and FTD: Where RNA metabolism meets protein quality control.

    abstract::Recent genetic and biochemical evidence has improved our understanding of the pathomechanisms that lead to amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD), two devastating neurodegenerative diseases with overlapping symptoms and causes. Impaired RNA metabolism, enhanced aggregation of protein-RNA...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2019.06.003

    authors: Mandrioli J,Mediani L,Alberti S,Carra S

    更新日期:2020-03-01 00:00:00

  • Metabolic control of beta-cell function.

    abstract::Glucose-induced insulin secretion is pulsatile. Glucose metabolism generates oscillations in the ATP/ADP ratio which lead to opening and closing of ATP-sensitive K(+)-channels producing subsequent oscillations in membrane potential, cytoplasmic calcium and insulin release. Metabolic signals derived from glucose can al...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1006/scdb.2000.0175

    authors: Deeney JT,Prentki M,Corkey BE

    更新日期:2000-08-01 00:00:00

  • Roles of molecular chaperones in cytoplasmic protein folding.

    abstract::Newly synthesized polypeptide chains must fold and assemble into unique three-dimensional structures in order to become functionally active. In many cases productive folding depends on assistance from molecular chaperones, which act in preventing off-pathway reactions during folding that lead to aggregation. The inher...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1006/scdb.1999.0347

    authors: Agashe VR,Hartl FU

    更新日期:2000-02-01 00:00:00

  • Nerves, H2O2 and Shh: Three players in the game of regeneration.

    abstract::The tight control of reactive oxygen species (ROS) levels is required during regeneration. H2O2 in particular assumes clear signalling functions at different steps in this process. Injured nerves induce high levels of H2O2 through the activation of the Hedgehog (Shh) pathway, providing an environment that promotes cel...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2017.08.015

    authors: Meda F,Rampon C,Dupont E,Gauron C,Mourton A,Queguiner I,Thauvin M,Volovitch M,Joliot A,Vriz S

    更新日期:2018-08-01 00:00:00

  • The role of ubiquitination in the regulation of primary cilia assembly and disassembly.

    abstract::The primary cilium is a cellular antenna found on the surface of many eukaryotic cells, whose main role is to sense and transduce signals that regulate growth, development, and differentiation. Although once believed to be a vestigial organelle without important function, it has become clear that defects in primary ci...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2018.09.005

    authors: Hossain D,Tsang WY

    更新日期:2019-09-01 00:00:00

  • The cybernetics of TNF: Old views and newer ones.

    abstract::The proinflammatory cytokine tumor necrosis factor (TNF) orchestrates complex multicellular processes through a wide variety of changes that it induces in cell functions. At various stages of the study of TNF, attention has been drawn to one of three different modes of its action. The work that led to the discovery of...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2015.10.014

    authors: Wallach D

    更新日期:2016-02-01 00:00:00

  • Drosophila Short stop as a paradigm for the role and regulation of spectraplakins.

    abstract::Spectraplakins are evolutionarily well conserved cytoskeletal linker molecules that are true members of three protein families: plakins, spectrins and Gas2-like proteins. Spectraplakin genes encode at least 7 characteristic functional domains which are combined in a modular fashion into multiple isoforms, and which ar...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2017.05.019

    authors: Voelzmann A,Liew YT,Qu Y,Hahn I,Melero C,Sánchez-Soriano N,Prokop A

    更新日期:2017-09-01 00:00:00

  • Making and repairing the mammalian brain--signaling toward neurogenesis and gliogenesis.

    abstract::Neural stem cells (NSCs) are subscribed extraordinary potential in repair of the damaged nervous system. However, the molecular identity of NSCs has not been established. Most NSC cultures contain large numbers of multipotent, bipotent, and lineage restricted neural progenitors, the majority of which appear to lose ne...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1084-9521(03)00007-7

    authors: Sun YE,Martinowich K,Ge W

    更新日期:2003-06-01 00:00:00

  • Gastrula organiser and embryonic patterning in the mouse.

    abstract::Embryonic patterning of the mouse during gastrulation and early organogenesis engenders the specification of anterior versus posterior structures and body laterality by the interaction of signalling and modulating activities. A group of cells in the mouse gastrula, characterised by the expression of a repertoire of "o...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2004.04.005

    authors: Robb L,Tam PP

    更新日期:2004-10-01 00:00:00

  • The role of the AU-rich elements of mRNAs in controlling translation.

    abstract::Adenosine- and uridine-rich elements (AREs) located in 3'-untranslated regions are the best-known determinants of RNA instability. These elements have also been shown to control translation in certain mRNAs, including mRNAs for prominent pro-inflammatory and tumor growth-related proteins, and physiological anti-inflam...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2004.11.008

    authors: Espel E

    更新日期:2005-02-01 00:00:00

  • The pharyngeal pouches and clefts: Development, evolution, structure and derivatives.

    abstract::The pharyngeal arches form the face and neck of the developing embryo. The pharyngeal tissue is divided into distinct arches by the formation of clefts and pouches in between the arches. These clefts and pouches form at the juxtaposition between the ectoderm and endoderm and develop into a variety of essential structu...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2010.01.022

    authors: Grevellec A,Tucker AS

    更新日期:2010-05-01 00:00:00

  • Calnexin family members as modulators of genetic diseases.

    abstract::The endoplasmic reticulum (ER) is an intracellular compartment devoted to the synthesis, segregation and folding of soluble and membrane secretory proteins. Some mutations in these proteins lead to their incorrect or incomplete folding in the ER. The ER has a quality control system which detects misfolded proteins and...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1006/scdb.1999.0316

    authors: Chevet E,Jakob CA,Thomas DY,Bergeron JJ

    更新日期:1999-10-01 00:00:00

  • The role of the lens actin cytoskeleton in fiber cell elongation and differentiation.

    abstract::The vertebrate ocular lens is a fascinating and unique transparent tissue that grows continuously throughout life. During the process of differentiation into fiber cells, lens epithelial cells undergo dramatic morphological changes, membrane remodeling, polarization, transcriptional activation and elimination of cellu...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2006.10.011

    authors: Rao PV,Maddala R

    更新日期:2006-12-01 00:00:00

  • Mitochondria as playmakers of apoptosis, autophagy and senescence.

    abstract::Mitochondria are the key energy-producing organelles and cellular source of reactive species. They are responsible for managing cell life and death by a balanced homeostasis passing through a network of structures, regulated principally via fission and fusion. Herein we discuss about the most advanced findings conside...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2019.05.022

    authors: Abate M,Festa A,Falco M,Lombardi A,Luce A,Grimaldi A,Zappavigna S,Sperlongano P,Irace C,Caraglia M,Misso G

    更新日期:2020-02-01 00:00:00

  • Glial progenitor cell-based repair of the dysmyelinated brain: Progression to the clinic.

    abstract::Demyelinating disorders of the central white matter are among the most prevalent and disabling conditions in neurology. Since myelin-producing oligodendrocytes comprise the principal cell type deficient or lost in these conditions, their replacement by new cells generated from transplanted bipotential oligodendrocyte-...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2020.12.004

    authors: Goldman SA,Mariani JN,Madsen PM

    更新日期:2021-01-04 00:00:00

  • The more adaptive to change, the more likely you are to survive: Protein adaptation in extremophiles.

    abstract::Discovering how organisms and their proteins adapt to extreme conditions is a complicated process. Every condition has its own set of adaptations that make it uniquely stable in its environment. The purpose of our review is to discuss what is known in the extremophilic community about protein adaptations. To simplify ...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2017.12.016

    authors: Brininger C,Spradlin S,Cobani L,Evilia C

    更新日期:2018-12-01 00:00:00

  • Substrate targeting by the ubiquitin-proteasome system in mitosis.

    abstract::Both cell cycle progression and the ubiquitin-proteasome system (UPS) that drives it are precisely regulated. Enzymatically, many ubiquitylation and degradation reactions have been characterized in in vitro systems, providing insights into the fundamental mechanisms of the UPS. Biologically, a range of degradation eve...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2012.01.015

    authors: Min M,Lindon C

    更新日期:2012-07-01 00:00:00

  • Determinants of tRNA editing and modification: avoiding conundrums, affecting function.

    abstract::In all organisms tRNAs play the essential role of connecting the genetic information found in DNA with the protein synthesis machinery ensuring fidelity during translation. Following transcription tRNAs undergo a number of processing events including numerous post-transcriptional modifications that render a tRNA molec...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2011.10.009

    authors: Paris Z,Fleming IM,Alfonzo JD

    更新日期:2012-05-01 00:00:00

  • Hepatic oval 'stem' cell in liver regeneration.

    abstract::Hepatic oval cell activation, proliferation, and differentiation has been observed under certain physiological conditions, mainly when the proliferation of existing hepatocytes has been inhibited followed by severe hepatic injury. Hepatic oval cells display a distinct phenotype and have been shown to be a bipotential ...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1084952102001271

    authors: Oh SH,Hatch HM,Petersen BE

    更新日期:2002-12-01 00:00:00

  • Glutathione synthesis and its role in redox signaling.

    abstract::Glutathione (GSH) is the most abundant antioxidant and a major detoxification agent in cells. It is synthesized through two-enzyme reaction catalyzed by glutamate cysteine ligase and glutathione synthetase, and its level is well regulated in response to redox change. Accumulating evidence suggests that GSH may play im...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2012.03.017

    authors: Zhang H,Forman HJ

    更新日期:2012-09-01 00:00:00

  • Wnt signaling during cochlear development.

    abstract::Wnt signaling is a hallmark of all embryonic development with multiple roles at multiple developmental time points. Wnt signaling is also important in the development of several organs, one of which is the inner ear, where it participates in otic specification, the formation of vestibular structures, and the developme...

    journal_title:Seminars in cell & developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.semcdb.2013.03.008

    authors: Munnamalai V,Fekete DM

    更新日期:2013-05-01 00:00:00