Molecular systematics of Apiaceae subfamily Apioideae: phylogenetic analyses of nuclear ribosomal DNA internal transcribed spacer and plastid RPO C1 intron sequences.

Abstract:

:Evolutionary relationships among representatives of Apiaceae (Umbelliferae) subfamily Apioideae have been inferred from phylogenetic analyses of nuclear ribosomal DNA internal transcribed spacer (ITS 1 and ITS 2) and plastid rpoC1 intron sequences. High levels of nucleotide sequence variation preclude the use of the ITS region for examining relationships across subfamilial boundaries in Apiaceae, whereas the rpoC1 intron is more suitably conserved for family-wide phylogenetic study but is too conserved for examining relationships among closely related taxa. In total, 126 ITS sequences from subfamily Apioideae and 100 rpoC1 intron sequences from Apiaceae (all three subfamilies) and outgroups Araliaceae and Pittosporaceae were examined. Phylogenies estimated using parsimony, neighbor-joining, and maximum likelihood methods reveal that: (1) Apiaceae subfamily Apioideae is monophyletic and is sister group to Apiaceae subfamily Saniculoideae; (2) Apiaceae subfamily Hydrocotyloideae is not monophyletic, with some members strongly allied to Araliaceae and others to Apioideae + Saniculoideae; and (3) Apiaceae subfamily Apioideae comprises several well-supported subclades, but none of these coincide with previously recognized tribal divisions based largely on morphological and anatomical characters of the fruit. Four major clades in Apioideae are provisionally recognized and provide the framework for future lower level phylogenetic analyses. A putative secondary structure model of the Daucus carota (carrot) rpoC1 group II intron is presented. Of its six major structural domains, domains II and III are the most, and domains V and VI the least, variable.

journal_name

Am J Bot

authors

Downie S,Ramanath S,Katz-Downie D,Llanas E

subject

Has Abstract

pub_date

1998-04-01 00:00:00

pages

563

issue

4

eissn

0002-9122

issn

1537-2197

pii

85/4/563

journal_volume

85

pub_type

杂志文章
  • Endosymbiosis and population differentiation in wild and cultivated Lolium perenne (Poaceae).

    abstract:PREMISE OF THE STUDY:Endophytic fungi are common inhabitants of cool-season grasses that can affect host growth and reproduction. One prerequisite for the expected coevolution between symbionts is that there exist variable effects of the endosymbiont on its host in different environments. Here, the impact of endophytes...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1000226

    authors: Cheplick GP

    更新日期:2011-05-01 00:00:00

  • Microsatellite markers of an important medicinal plant, Eurycoma longifolia (Simaroubaceae), for DNA profiling.

    abstract:PREMISE OF THE STUDY:Microsatellite markers of an important medicinal plant, Eurycoma longifolia (Simaroubaceae), were developed for DNA profiling and genetic diversity studies. METHODS AND RESULTS:Eighteen polymorphic microsatellite loci were developed for E. longifolia. The primers were designed from a genomic libra...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1000469

    authors: Tnah LH,Lee CT,Lee SL,Ng KK,Ng CH,Hwang SS

    更新日期:2011-05-01 00:00:00

  • Generic circumscription and relationships in the tribe Melanthieae (Liliales, Melanthiaceae), with emphasis on Zigadenus: evidence from ITS and trnL-F sequence data.

    abstract::The circumscription and relationships of genera within the tribe Melanthieae (29 representative taxa) were evaluated using parsimony analyses of ITS (nuclear ribosomal) and trnL-F (plastid) DNA sequence data, alone and in combination. Proposed new generic circumscriptions, strongly supported by the tree statistics and...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Zomlefer WB,Williams NH,Whitten WM,Judd WS

    更新日期:2001-09-01 00:00:00

  • Is the anthophyte hypothesis alive and well? New evidence from the reproductive structures of Bennettitales.

    abstract::Bennettitales is an extinct group of seed plants with reproductive structures that are similar in some respects to both Gnetales and angiosperms, but systematic relationships among the three clades remain controversial. This study summarizes characters of bennettitalean plants and presents new evidence for the structu...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.0800209

    authors: Rothwell GW,Crepet WL,Stockey RA

    更新日期:2009-01-01 00:00:00

  • Morphology and development of the female flowers in Geonoma interrupta (Arecaceae).

    abstract::Morphology and development of the female flowers in Geonoma interrupta are described and compared with other taxa within Arecaceae. Inflorescences are pleiothyrses. Cincinni are immersed in pits and arranged according to the Fibonacci pattern along the rachillae. The gynoecium is composed of three free carpels in earl...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.89.2.220

    authors: Stauffer FW,Rutishauser R,Endress PK

    更新日期:2002-02-01 00:00:00

  • Similarities and differences in intrapopulation trait correlations of co-occurring tree species: consistent water-use relationships amid widely different correlation patterns.

    abstract:PREMISE OF THE STUDY:General relationships among functional traits have been identified across species, but the forces shaping these relationships remain largely unknown. Adopting an approach from evolutionary biology, we studied similarities and differences in intrapopulation trait correlations among locally co-occurr...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1146

    authors: Messier J,Violle C,Enquist BJ,Lechowicz MJ,McGill BJ

    更新日期:2018-09-01 00:00:00

  • Pinus baileyi (section Pinus, Pinaceae) from the Paleogene of Idaho, USA.

    abstract::Pinus baileyi from the Paleogene of Idaho was initially related to the bristlecone pine P. longaeva (subgen. Strobus, sect. Parrya, subsect. Balfourianae) from western North America. Unlike the centromucronate condition in P. longaeva, P. baileyi cones have raised umbos that are excentromucronate, i.e., the mucro posi...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.93.2.197

    authors: Erwin DM,Schorn HE

    更新日期:2006-02-01 00:00:00

  • Isozyme diversity in Iris Cristata and the threatened glacial endemic I. Lacustris (Iridaceae).

    abstract::Iris cristata and I. lacustris differ markedly in geographic distribution, glacial history of current ranges, and ecology. We hypothesized that I. cristata, a widespread species of unglaciated regions of eastern North America, would exhibit genetic diversity typical of other widespread plant species, whereas the threa...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Hannan GL,Orick MW

    更新日期:2000-03-01 00:00:00

  • A subgeneric classification of Selaginella (Selaginellaceae).

    abstract:PREMISE OF THE STUDY:The lycophyte family Selaginellaceae includes approximately 750 herbaceous species worldwide, with the main species richness in the tropics and subtropics. We recently presented a phylogenetic analysis of Selaginellaceae based on DNA sequence data and, with the phylogeny as a framework, the study d...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1600288

    authors: Weststrand S,Korall P

    更新日期:2016-12-01 00:00:00

  • Clonality in wild rice (Oryza rufipogon, Poaceae) and its implications for conservation management.

    abstract::Correlations were examined between habitat characters and clonal structures determined by the RAPD (random amplified polymorphic DNA) assay in five populations of Oryza rufipogon in China. Nine of 175 decameric primers were used in the study because they reproducibly amplified polymorphisms. The extent of clonality to...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Xie ZW,Lu YQ,Ge S,Hong DY,Li FZ

    更新日期:2001-06-01 00:00:00

  • Assessing the impact of phylogenetic incongruence on taxonomy, floral evolution, biogeographical history, and phylogenetic diversity.

    abstract:PREMISE OF THE STUDY:Phylogenetic incongruence between "gene trees" and "species trees" has been widely acknowledged in phylogenetic research. Conflicts may emerge from several processes including paralogy, hybridization, and incomplete lineage sorting. Although phylogenetic incongruence appears common, its impact on m...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1400527

    authors: Zhang Q,Feild TS,Antonelli A

    更新日期:2015-04-01 00:00:00

  • Ecological factors influencing tetraploid establishment in snow buttercups (Ranunculus adoneus , Ranunculaceae): minority cytotype exclusion and barriers to triploid formation.

    abstract::Polyploid speciation is an ongoing, important source of angiosperm diversity. However, the barriers to polyploid speciation and mechanisms of establishment remain poorly understood for all but a few species. Several factors likely to have influenced tetraploid establishment, including barriers to triploid formation, c...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.92.11.1827

    authors: Baack EJ

    更新日期:2005-11-01 00:00:00

  • Phylogenetic relationships in Disa based on non-coding trnL-trnF chloroplast sequences: evidence of numerous repeat regions.

    abstract::Sequence data from the intron and spacer of the trnL-F chloroplast region elucidate the phylogenetic relationships of the tribe Diseae (Orchidoideae: Orchidaceae). Within Diseae, 41 species of Disa, two of Brownleea, three of Satyrium, and two of Corycium were included, with five species of Habenaria sensu lato (Orchi...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Bellstedt DU,Linder HP,Harley EH

    更新日期:2001-11-01 00:00:00

  • Diversity, distribution, development, and evolution of medullary bundles in Nyctaginaceae.

    abstract:PREMISE:Medullary bundles, i.e., vascular units in the pith, have evolved multiple times in vascular plants. However, no study has ever explored their anatomical diversity and evolution within a phylogenetic framework. Here, we investigated the development of the primary vascular system within Nyctaginaceae showing how...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1471

    authors: da Cunha Neto IL,Pace MR,Douglas NA,Nee MH,de Sá CFC,Moore MJ,Angyalossy V

    更新日期:2020-05-01 00:00:00

  • Genetic analyses of Astragalus sect. Humillimi (Fabaceae) resolve taxonomy and enable effective conservation.

    abstract:PREMISE OF THE STUDY:Astragalus sect. Humillimi is distributed across the southwestern United States and contains two endangered taxa, A. cremnophylax var. cremnophylax and A. humillimus. The former was originally described from the South Rim of the Grand Canyon. Analysis of individuals discovered on the North Rim of t...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1157

    authors: Massatti R,Belus MT,Dowlatshahi S,Allan GJ

    更新日期:2018-10-01 00:00:00

  • Phylogenetic perspectives on diversification, biogeography, and floral evolution of Collinsia and Tonella (Plantaginaceae).

    abstract:PREMISE OF THE STUDY:Collinsia was the subject of classic biosystematic studies by Garber and colleagues and is increasingly investigated to address major evolutionary questions. Lack of phylogenetic data from more than one gene region and one taxonomic exemplar has left relationships, diversity, and phytogeography of ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1000346

    authors: Baldwin BG,Kalisz S,Armbruster WS

    更新日期:2011-04-01 00:00:00

  • CONTRASTING STOMATAL RESPONSES TO VARIABLE SUNLIGHT IN TWO SUBALPINE HERBS.

    abstract::Gas exchange was measured in two subalpine herbs during alternating periods of sun and shade that simulated natural cloud patterns. Stomatal conductance (g) in the subalpine herb Helianthella quinquenervis was reduced by as much as 75% during 5-min shade periods that ranged in photosynthetic photon flux density (PPFD)...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/j.1537-2197.1990.tb13548.x

    authors: Knapp AK,Smith WK

    更新日期:1990-02-01 00:00:00

  • Phylogenetics of the florally diverse Andean clade Iochrominae (Solanaceae).

    abstract::Recent molecular phylogenetic studies of Solanaceae have identified many well-supported clades within the family and have permitted the creation of a phylogenetic system of classification. Here we estimate the phylogeny for Iochrominae, a clade of Physaleae sensu Olmstead et al. (1999), which contains 34 Andean specie...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.93.8.1140

    authors: Smith SD,Baum DA

    更新日期:2006-08-01 00:00:00

  • Ontogenetic wood anatomy of tree and subtree species of Nepalese Rhododendron (Ericaceae) and characterization of shrub species.

    abstract::Ontogenetic trends in the wood structure of Nepalese Rhododendron were studied in 15 specimens of two tree and four subtree species. Average growth ring width was constant from pith to bark in spite of occurrences of extremely narrow, false, or discontinuous rings. Vessel density, vessel area, vessel element length, a...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Noshiro S,Suzuki M

    更新日期:2001-04-01 00:00:00

  • The vulnerability to freezing-induced xylem cavitation of Larrea tridentata (Zygophyllaceae) in the Chihuahuan desert.

    abstract::The temperature dependence of freezing-induced xylem cavitation was studied in a Chihuahuan desert population of Larrea tridentata (Zygophyllaceae). Field measurements of wood temperature and xylem embolism were combined with anatomical studies and laboratory measurements of embolism in stem and root samples frozen un...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.89.12.1916

    authors: Martínez-Vilalta J,Pockman WT

    更新日期:2002-12-01 00:00:00

  • Development and characterization of 10 microsatellite loci in Paeonia lactiflora (Paeoniaceae).

    abstract:UNLABELLED: PREMISE OF THE STUDY:Microsatellite primers were developed in Paeonia lactiflora for further population genetic studies. • METHODS AND RESULTS:Ten dinucleotide microsatellite markers were developed using an enriched genomic library. They were identified in 58 individuals, and nine markers were also amplif...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1100083

    authors: Sun J,Yuan J,Wang B,Pan J,Zhang D

    更新日期:2011-09-01 00:00:00

  • Effect of salinity on growth, ion content, and cell wall chemistry in Atriplex prostrata (Chenopodiaceae).

    abstract::Atriplex prostrata Boucher, a facultative halophyte, exhibits significant reduction in height and biomass and in the width of the cortex and vascular tissue under saline conditions. Therefore, the goal of this investigation was to determine the effect of salinity on plant growth as well as on the patterns of lignifica...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Wang L,Showalter A,Ungar I

    更新日期:1997-09-01 00:00:00

  • Microsatellite primers in Rhamnus cathartica (Rhamnaceae) and applicability in related taxa to assess hybridization events.

    abstract:UNLABELLED: PREMISE OF THE STUDY:Microsatellite primers were developed in the introduced shrub Rhamnus cathartica L., to investigate potential hybridization events with related taxa as a stimulus of invasive spread. • METHODS AND RESULTS:Using a non-radioactive protocol, 15 primer sets were identified in North Americ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.0900394

    authors: Culley TM,Stewart JR

    更新日期:2010-03-01 00:00:00

  • Land-use change has no detectable effect on reproduction of a disturbance-adapted, hawkmoth-pollinated plant species.

    abstract:PREMISE OF THE STUDY:Land-use change is cited as a primary driver of global biodiversity loss, with myriad consequences for species, populations, and ecosystems. However, few studies have examined its impact on species interactions, particularly pollination. Furthermore, when the effects of land-use change on pollinati...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1600302

    authors: Skogen KA,Jogesh T,Hilpman ET,Todd SL,Rhodes MK,Still SM,Fant JB

    更新日期:2016-11-01 00:00:00

  • Susceptibility of clover species to fungal infection: the interaction of leaf surface traits and environment.

    abstract::Many foliar pathogens require free water to germinate; therefore, disease pressure should favor plants that are able to repel water. For a suite of 18 sympatric clover species (Trifolium and Medicago, Fabaceae), we evaluated leaf traits affecting leaf wetness and susceptibility to infection by the fungal pathogen Stem...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.90.6.857

    authors: Bradley DJ,Gilbert GS,Parker IM

    更新日期:2003-06-01 00:00:00

  • Comparison of common cytotypesof Andropogon gerardii(Andropogoneae, Poaceae).

    abstract::Many plant species contain populations with more than one polyploid cytotype, but little is known of the mechanisms maintaining several cytotypes in a population. Andropogon gerardii cytotypes were compared to evaluate different models of autopolyploid cytotype coexistence. The enneaploid (90 chromosome, 9x) cytotype ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Keeler KH,Davis GA

    更新日期:1999-07-01 00:00:00

  • Heat-shock proteins are induced in unstressed leaves of Nicotiana attenuata (Solanaceae) when distant leaves are stressed.

    abstract::In Nicotiana attenuata, systemic induction of heat-shock proteins (Hsps) was detected in response to the treatment of single leaves by either heat shock, mechanical damage, or exogenous application of methyl jasmonate (MJ). All treatments increased the abundance of members of the 70-kD Hsp (Hsp70) family and induced s...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Hamilton Iii EW,Coleman JS

    更新日期:2001-05-01 00:00:00

  • Reproduction, growth, and defense trade-offs vary with gender and reproductive allocation in Ilex glabra (Aquifoliaceae).

    abstract:PREMISE OF THE STUDY:Male-biased herbivory in dioecious species is expected as a consequence of selection for increased resistance (reduced attack) in the sex with higher reproductive costs-females. Empirical support of this prediction is taxonomically restricted and fraught with exceptions. Phenological changes in res...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1200603

    authors: Buckley NE,Avila-Sakar G

    更新日期:2013-02-01 00:00:00

  • The ecology, evolution, and biogeography of dioecy in the genus Solanum: with paradigms from the strong dioecy in Solanum polygamum, to the unsuspected and cryptic dioecy in Solanum conocarpum.

    abstract:UNLABELLED:• PREMISE OF THE STUDY:Island plants are over-exploited and "under-explored." Understanding the reproductive biology of plants, especially rare species, is fundamental to clarifying their evolution, estimating potential for change, and for creating effective conservation plans. Clarification of sexual syste...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1400486

    authors: Anderson GJ,Anderson MK,Patel N

    更新日期:2015-03-01 00:00:00

  • Phylogeny of Rutaceae based on twononcoding regions from cpDNA.

    abstract::Primarily known only by the edible fruits of Citrus, Rutaceae comprise a large (c. 160 genera and 1900 species), morphologically diverse, cosmopolitan family. Of its extraordinary array of secondary chemical compounds, many have medicinal, antimicrobial, insecticidal, or herbicidal properties. To assist with the much-...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.2007313

    authors: Groppo M,Pirani JR,Salatino ML,Blanco SR,Kallunki JA

    更新日期:2008-08-01 00:00:00