Abstract:
:We established artificial consortia of bacteria inoculated from soil and a green alga, Chlorella vulgaris NIES-227. The bacteria and the alga were mixed in a tube or partitioned in a dialysing culture vessel, and the bacterial composition was examined after cultivation. The community of bacteria formed in the consortia included those phylogenetically closely related to the genera Phenylobacterium, Brevundimonas, Phyllobacterium, Afipia, Sphingomonas, Sandaracinobacter, Ramlibacter, Ralstonia, Cellvibrio, and so on. The community also included bacteria belonging to unknown genera within the phyla Bacteroidetes, Verrucomicrobia, and Acidobacteria. It was indicated that Ralstonia sp. and Cellvibrio sp. were attached to the algal cells and Phenylobacterium sp. Ramlibacter sp., Methylophilus sp., and Rhizobiaceae bacterium were not. It was suggested that bacteria belonging to the phylum Bacteroidetes and the class Alphaproteobacteria could be hemi-selectively enriched by the alga.
journal_name
Microbes Environjournal_title
Microbes and environmentsauthors
Ueda H,Otsuka S,Senoo Kdoi
10.1264/jsme2.me09177subject
Has Abstractpub_date
2010-01-01 00:00:00pages
36-40issue
1eissn
1342-6311issn
1347-4405pii
JST.JSTAGE/jsme2/ME09177journal_volume
25pub_type
杂志文章abstract::We investigated the effects of the water status (flooded or non-flooded) and presence of the nosZ gene in bradyrhizobia on the bradyrhizobial community structure in a factorial experiment that examined three temperature levels (20°C, 25°C, and 30°C) and two soil types (andosol and gray lowland soil) using microcosm in...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME16132
更新日期:2017-06-24 00:00:00
abstract::Members of the Legionella genus find suitable conditions for their growth and survival in nuclear power plant cooling circuits. To limit the proliferation of Legionella pathogenic bacteria in nuclear power plant cooling circuits, and ensure that levels remain below regulatory thresholds, monochloramine treatment can b...
journal_title:Microbes and environments
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abstract::Fucose-containing oligosaccharides on the cell surface of some pathogenic bacteria are thought to be important for host-microbe interactions and to play a major role in the pathogenicity of bacterial pathogens. Here, we screened marine bacteria for glycosyltransferases using two methods: a one-pot glycosyltransferase ...
journal_title:Microbes and environments
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doi:10.1264/jsme2.me12058
更新日期:2012-01-01 00:00:00
abstract::The nifV gene encodes homocitrate synthase, the enzyme that catalyzes the formation of homocitrate, which is essential for arranging the FeMo-cofactor in the catalytic center of nitrogenase. Some host plants, such as Lotus japonicus, supply homocitrate to their symbionts, in this case, Mesorhizobium loti, which lacks ...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME19078
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abstract::A wide variety of haloorganic compounds undergo reductive dehalogenation by certain anaerobic microorganisms. Metabolic reductive dehalogenation is coupled with energy-conserving respiratory electron transport in which a halogenated compound is used as the terminal electron acceptor, the biological process called deha...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.23.1
更新日期:2008-01-01 00:00:00
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journal_title:Microbes and environments
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doi:10.1264/jsme2.ME20041
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doi:10.1264/jsme2.ME18033
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journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME14086
更新日期:2014-01-01 00:00:00
abstract::Changes in the bacterial community in soil-water suspensions during the enrichment period of 2,4-D and 2,4,5-T degraders were examined using denaturing gradient gel electrophoresis (DGGE) analysis of the 16S rRNA gene. The nucleotide sequences of almost all major bands at the degradation of 2,4-D and 2,4,5-T correspon...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.23.142
更新日期:2008-01-01 00:00:00
abstract::The Gram-negative marine propylene-assimilating bacterium, strain PE-TB08W, was isolated from surface seawater. A structural gene analysis using the 16S rRNA gene showed 96, 94, and 95% similarities to Halioglobus species, Haliea sp. ETY-M, and Haliea sp. ETY-NAG, respectively. A phylogenetic tree analysis showed that...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME18053
更新日期:2019-03-30 00:00:00
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journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME19074
更新日期:2019-12-27 00:00:00
abstract::In order to understand the relationships between understory bamboo and soil properties, we compared microbial community structures in the soil of a Betula ermanii boreal forest with Sasa kurilensis present and removed using high-throughput DNA sequencing. The presence of understory S. kurilensis strongly affected soil...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME16154
更新日期:2017-06-24 00:00:00
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journal_title:Microbes and environments
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doi:10.1264/jsme2.ME16087
更新日期:2016-12-23 00:00:00
abstract::A cellular approach combining Direct Viable Counting and Fluorescent In Situ Hybridization using a one-step multiple-probe technique and Solid Phase Cytometry (DVC-FISH-SPC) was developed to monitor total viable vibrios and cover the detection of a large diversity of vibrios. FISH combined three probes in the same ass...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME17028
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abstract::The biological flux and lifetime of methanol in anoxic marine sediments are largely unknown. We herein reported, for the first time, quantitative methanol removal rates in subsurface sediments. Anaerobic incubation experiments with radiotracers showed high rates of microbial methanol consumption. Notably, methanol oxi...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME15204
更新日期:2016-06-25 00:00:00
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journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME14142
更新日期:2015-01-01 00:00:00
abstract::The genome of Streptomyces scabies, the predominant causal agent of potato common scab, encodes a potential cutinase, the protein Sub1, which was previously shown to be specifically induced in the presence of suberin. The sub1 gene was expressed in Escherichia coli and the recombinant protein Sub1 was purified and cha...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME19086
更新日期:2020-01-01 00:00:00
abstract::N-Acylhomoserine lactones (AHLs) are used as quorum-sensing signaling molecules by many Gram-negative bacteria. Here, 413 bacterial strains were obtained from the roots of potato plants and screened for AHL-degrading bacteria using Chromobacterium violaceum reporter strains. Sixty one isolates degraded N-hexanoyl-L-ho...
journal_title:Microbes and environments
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doi:10.1264/jsme2.me10207
更新日期:2011-01-01 00:00:00
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journal_title:Microbes and environments
pub_type: 杂志文章,评审
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journal_title:Microbes and environments
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doi:10.1264/jsme2.ME14177
更新日期:2015-01-01 00:00:00
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journal_title:Microbes and environments
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更新日期:2009-01-01 00:00:00
abstract::Growth inhibition due to continuous cropping of asparagus is a major problem; the yield of asparagus in replanted fields is low compared to that in new fields, and missing plants occur among young seedlings. Although soil-borne disease and allelochemicals are considered to be involved in this effect, this is still con...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.me11222
更新日期:2012-01-01 00:00:00
abstract::The aim of the present study was to investigate the prokaryotic community structure of the anaerobic ciliate, Metopus sp. using rRNA sequencing, fluorescence in situ hybridization (FISH), and transmission electron microscopy (TEM). Metopus sp. was physically separated from anaerobic granular sludge in a domestic waste...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME15154
更新日期:2015-01-01 00:00:00
abstract::The relative isolation and unique physical properties of the Savusavu Hot Springs in Fiji may yield unique thermophiles. This study was conducted to determine the presence of aerobic thermophilic bacteria in these hot springs. A total of 104 thermophilic bacterial isolates were characterized and using Thermus and Baci...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.me08105
更新日期:2008-01-01 00:00:00
abstract::Termites depend nutritionally on their gut microbes, and protistan, bacterial, and archaeal gut communities have been extensively studied. However, limited information is available on viruses in the termite gut. We herein report the complete genome sequence (99,517 bp) of a phage obtained during a genome analysis of "...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME16175
更新日期:2017-06-24 00:00:00
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journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.me14026
更新日期:2014-01-01 00:00:00
abstract::The simultaneous extraction of plant organelle (mitochondria and plastid) genes during the DNA extraction step is a major limitation in investigating the community structures of bacteria associated with plants because organelle SSU rRNA genes are easily amplified by PCR using primer sets that are specific to bacteria....
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.me14061
更新日期:2014-09-17 00:00:00
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journal_title:Microbes and environments
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更新日期:2014-01-01 00:00:00
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journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME18077
更新日期:2018-12-28 00:00:00
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journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME17041
更新日期:2018-09-29 00:00:00