Modelling the geographical distribution of co-infection risk from single-disease surveys.

Abstract:

BACKGROUND:The need to deliver interventions targeting multiple diseases in a cost-effective manner calls for integrated disease control efforts. Consequently, maps are required that show where the risk of co-infection is particularly high. Co-infection risk is preferably estimated via Bayesian geostatistical multinomial modelling, using data from surveys screening for multiple infections simultaneously. However, only few surveys have collected this type of data. METHODS:Bayesian geostatistical shared component models (allowing for covariates, disease-specific and shared spatial and non-spatial random effects) are proposed to model the geographical distribution and burden of co-infection risk from single-disease surveys. The ability of the models to capture co-infection risk is assessed on simulated data sets based on multinomial distributions assuming light- and heavy-dependent diseases, and a real data set of Schistosoma mansoni-hookworm co-infection in the region of Man, Côte d'Ivoire. The data were restructured as if obtained from single-disease surveys. The estimated results of co-infection risk, together with independent and multinomial model results, were compared via different validation techniques. RESULTS:The results showed that shared component models result in more accurate estimates of co-infection risk than models assuming independence in settings of heavy-dependent diseases. The shared spatial random effects are similar to the spatial co-infection random effects of the multinomial model for heavy-dependent data. CONCLUSIONS:In the absence of true co-infection data geostatistical shared component models are able to estimate the spatial patterns and burden of co-infection risk from single-disease survey data, especially in settings of heavy-dependent diseases.

journal_name

Stat Med

journal_title

Statistics in medicine

authors

Schur N,Gosoniu L,Raso G,Utzinger J,Vounatsou P

doi

10.1002/sim.4243

subject

Has Abstract

pub_date

2011-06-30 00:00:00

pages

1761-76

issue

14

eissn

0277-6715

issn

1097-0258

journal_volume

30

pub_type

杂志文章
  • Predictive accuracy of risk factors and markers: a simulation study of the effect of novel markers on different performance measures for logistic regression models.

    abstract::The change in c-statistic is frequently used to summarize the change in predictive accuracy when a novel risk factor is added to an existing logistic regression model. We explored the relationship between the absolute change in the c-statistic, Brier score, generalized R(2) , and the discrimination slope when a risk f...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.5598

    authors: Austin PC,Steyerberg EW

    更新日期:2013-02-20 00:00:00

  • Confidence intervals for an exposure adjusted incidence rate difference with applications to clinical trials.

    abstract::To summarize safety data such as clinical adverse experiences in clinical trials with a moderate to long-term follow-up, we may use a measurement which accounts for the potential differences in the follow-up duration between treatment groups. The incidence rate, which uses the total person-time follow-up in a treatmen...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.2335

    authors: Liu GF,Wang J,Liu K,Snavely DB

    更新日期:2006-04-30 00:00:00

  • Practical issues in data monitoring of clinical trials: summary of responses to a questionnaire at NIH.

    abstract::A targeted poll was undertaken to compare and contrast models of data monitoring of randomized clinical trials sponsored by the National Institutes of Health. In an attempt to represent the institutes which conduct clinical trials, twelve individuals were selected and asked to respond to a questionnaire specifically p...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780120520

    authors: Geller NL,Stylianou M

    更新日期:1993-03-01 00:00:00

  • Joint estimation of multiple disease-specific sensitivities and specificities via crossed random effects models for correlated reader-based diagnostic data: application of data cloning.

    abstract::We present a model for describing correlated binocular data from reader-based diagnostic studies, where the same group of readers evaluates the presence or absence of certain diseases on binocular organs (e.g., fellow eyes) of patients. Multiple random effects are incorporated to meaningfully delineate various associa...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.6584

    authors: Withanage N,de Leon AR,Rudnisky CJ

    更新日期:2015-12-20 00:00:00

  • Adjusting for verification bias in diagnostic test evaluation: a Bayesian approach.

    abstract::Obtaining accurate estimates of the performance of a diagnostic test for some population of patients might be difficult when the sample of subjects used for this purpose is not representative for the whole population. Thus, in the motivating example of this paper a test is evaluated by comparing its results with those...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.3099

    authors: Buzoianu M,Kadane JB

    更新日期:2008-06-15 00:00:00

  • Semiparametric Bayesian variable selection for gene-environment interactions.

    abstract::Many complex diseases are known to be affected by the interactions between genetic variants and environmental exposures beyond the main genetic and environmental effects. Study of gene-environment (G×E) interactions is important for elucidating the disease etiology. Existing Bayesian methods for G×E interaction studie...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.8434

    authors: Ren J,Zhou F,Li X,Chen Q,Zhang H,Ma S,Jiang Y,Wu C

    更新日期:2020-02-28 00:00:00

  • Joint analysis of mixed types of outcomes with latent variables.

    abstract::We propose a joint modeling approach to investigating the observed and latent risk factors of mixed types of outcomes. The proposed model comprises three parts. The first part is an exploratory factor analysis model that summarizes latent factors through multiple observed variables. The second part is a proportional h...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.8840

    authors: Pan D,Wei Y,Song X

    更新日期:2020-12-09 00:00:00

  • Analyzing longitudinal data with patients in different disease states during follow-up and death as final state.

    abstract::This paper considers the analysis of longitudinal data complicated by the fact that during follow-up patients can be in different disease states, such as remission, relapse or death. If both the response of interest (for example, quality of life (QOL)) and the amount of missing data depend on this disease state, ignor...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.3755

    authors: le Cessie S,de Vries EG,Buijs C,Post WJ

    更新日期:2009-12-30 00:00:00

  • Application of a two-stage random effects model to longitudinal pulmonary function data from sarcoidosis patients.

    abstract::We applied a two-stage random effects model to pulmonary function data from 31 sarcoidosis patients to illustrate its usefulness in analysing unbalanced longitudinal data. For the first stage, repeated measurements of percentage of predicted forced vital capacity (FVC%) from an individual were modelled as a function o...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780080206

    authors: Vacek PM,Mickey RM,Bell DY

    更新日期:1989-02-01 00:00:00

  • Assessing heterogeneity and correlation of paired failure times with the bivariate frailty model.

    abstract::We consider bivariate survival times for heterogeneous populations, where heterogeneity induces deviations in an individual's risk of an event as well as associations between survival times. The heterogeneity is characterized by a bivariate frailty model. We measure the heterogeneity effects through deviations associa...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/(sici)1097-0258(19990430)18:8<907::aid-sim

    authors: Xue X,Ding Y

    更新日期:1999-04-30 00:00:00

  • A standardization method to adjust for the effect of patient selection in phase II clinical trials.

    abstract::New combination regimens evaluated in phase II cancer clinical trials often show promising results compared to the standard therapy for a disease system. Selection of patients with a better prognosis can be a prominent factor for this optimism. For most disease systems, prognostic variables that are related to the out...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.706

    authors: Mazumdar M,Fazzari M,Panageas KS

    更新日期:2001-03-30 00:00:00

  • Constructing multiple test procedures for partially ordered hypothesis sets.

    abstract::A popular method to control multiplicity in confirmatory clinical trials is to use a so-called hierarchical, or fixed sequence, test procedure. This requires that the null hypotheses are ordered a priori, for example, in order of clinical importance. The procedure tests the hypotheses in this order using alpha-level t...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.2905

    authors: Edwards D,Madsen J

    更新日期:2007-12-10 00:00:00

  • Bounds on natural direct effects in the presence of confounded intermediate variables.

    abstract::In epidemiological studies we often want to learn about the direct effect of an exposure on an outcome, i.e. the effect that is not relayed by a specific intermediate variable. In the literature, there are two common definitions of direct effects; controlled and natural. When the intermediate variable and the outcome ...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.3493

    authors: Sjölander A

    更新日期:2009-02-15 00:00:00

  • Rank-based estimating equations with general weight for accelerated failure time models: an induced smoothing approach.

    abstract::The induced smoothing technique overcomes the difficulties caused by the non-smoothness in rank-based estimating functions for accelerated failure time models, but it is only natural when the estimating function has Gehan's weight. For a general weight, the induced smoothing method does not provide smooth estimating f...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.6415

    authors: Chiou S,Kang S,Yan J

    更新日期:2015-04-30 00:00:00

  • On design considerations and randomization-based inference for community intervention trials.

    abstract::This paper discusses design considerations and the role of randomization-based inference in randomized community intervention trials. We stress that longitudinal follow-up of cohorts within communities often yields useful information on the effects of intervention on individuals, whereas cross-sectional surveys can us...

    journal_title:Statistics in medicine

    pub_type: 杂志文章,评审

    doi:10.1002/(SICI)1097-0258(19960615)15:11<1069::AID-S

    authors: Gail MH,Mark SD,Carroll RJ,Green SB,Pee D

    更新日期:1996-06-15 00:00:00

  • Some statistical issues in project prioritization in the pharmaceutical industry.

    abstract::Various aspects of portfolio management and project prioritization within the pharmaceutical industry are examined. It is shown that the cost and probability architecture of a project is a crucial aspect of its value. An appropriate simple tool for ranking projects is the Pearson index. Various difficulties are consid...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0258(19961230)15:24<2689::AID-S

    authors: Senn S

    更新日期:1996-12-30 00:00:00

  • Correcting for regression in assessing the response to treatment in a selected population.

    abstract::Previous work on the consequences of regression to the mean for the interpretation of responses to treatment is extended to the situation where the response measured is the proportional change in some variable. Methods for correcting for the bias are discussed. ...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780060203

    authors: Curnow RN

    更新日期:1987-03-01 00:00:00

  • Covariate adjusted mixture models and disease mapping with the program DismapWin.

    abstract::The analysis and recognition of disease clustering in space and its representation on a map is an important problem in epidemiology. An approach using mixture models to identify spatial heterogeneity in disease risk and map construction within an empirical Bayes framework is described. Once heterogeneity is detected, ...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/(sici)1097-0258(19960415)15:7/9<919::aid-s

    authors: Schlattmann P,Dietz E,Böhning D

    更新日期:1996-04-15 00:00:00

  • Estimating patterns of CD4 lymphocyte decline using data from a prevalent cohort of HIV infected individuals.

    abstract::In natural history studies of chronic disease, it is of interest to understand the evolution of key variables that measure aspects of disease progression. This is particularly true for immunological variables among persons infected with the human immunodeficiency virus (HIV). The natural time scale for such studies is...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780131103

    authors: Vittinghoff E,Malani HM,Jewell NP

    更新日期:1994-06-15 00:00:00

  • Model mis-specification and overestimation of the intraclass correlation coefficient in cluster randomized trials.

    abstract::Intraclass correlation coefficient (ICC) estimates must be provided when reporting the results of a cluster randomized trial. This study demonstrates that estimating this parameter with one-way ANOVA and an underlying mixed-effects statistical model leads to biased estimates. The bias depends on the effect size of the...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.2260

    authors: Giraudeau B

    更新日期:2006-03-30 00:00:00

  • Cancer immunotherapy trial design with cure rate and delayed treatment effect.

    abstract::Cancer immunotherapy trials have two special features: a delayed treatment effect and a cure rate. Both features violate the proportional hazard model assumption and ignoring either one of the two features in an immunotherapy trial design will result in substantial loss of statistical power. To properly design immunot...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.8440

    authors: Wei J,Wu J

    更新日期:2020-03-15 00:00:00

  • An overall strategy based on regression models to estimate relative survival and model the effects of prognostic factors in cancer survival studies.

    abstract::Relative survival provides a measure of the proportion of patients dying from the disease under study without requiring the knowledge of the cause of death. We propose an overall strategy based on regression models to estimate the relative survival and model the effects of potential prognostic factors. The baseline ha...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.2656

    authors: Remontet L,Bossard N,Belot A,Estève J,French network of cancer registries FRANCIM.

    更新日期:2007-05-10 00:00:00

  • An easy-to-implement approach for analyzing case-control and case-only studies assuming gene-environment independence and Hardy-Weinberg equilibrium.

    abstract::The case-control study is a simple and an useful method to characterize the effect of a gene, the effect of an exposure, as well as the interaction between the two. The control-free case-only study is yet an even simpler design, if interest is centered on gene-environment interaction only. It requires the sometimes pl...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4028

    authors: Lee WC,Wang LY,Cheng KF

    更新日期:2010-10-30 00:00:00

  • A community trial strategy for evaluating treatment for symptomatic conditions.

    abstract::A method has been developed for simultaneously comparing the usefulness of many treatments of established value for symptomatic medical conditions. Medical assessment of outcome is not employed. Instead patients are required to assess treatments prescribed during the course of ordinary general practice rather than und...

    journal_title:Statistics in medicine

    pub_type: 临床试验,杂志文章,随机对照试验

    doi:10.1002/sim.4780040104

    authors: Charlton JR,D'Souza MF,Tooley M,Silver R

    更新日期:1985-01-01 00:00:00

  • Designing a pilot sequential multiple assignment randomized trial for developing an adaptive treatment strategy.

    abstract::There is growing interest in how best to adapt and readapt treatments to individuals to maximize clinical benefit. In response, adaptive treatment strategies (ATS), which operationalize adaptive, sequential clinical decision making, have been developed. From a patient's perspective an ATS is a sequence of treatments, ...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4512

    authors: Almirall D,Compton SN,Gunlicks-Stoessel M,Duan N,Murphy SA

    更新日期:2012-07-30 00:00:00

  • The many weak instruments problem and Mendelian randomization.

    abstract::Instrumental variable estimates of causal effects can be biased when using many instruments that are only weakly associated with the exposure. We describe several techniques to reduce this bias and estimate corrected standard errors. We present our findings using a simulation study and an empirical application. For th...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.6358

    authors: Davies NM,von Hinke Kessler Scholder S,Farbmacher H,Burgess S,Windmeijer F,Smith GD

    更新日期:2015-02-10 00:00:00

  • Common sense and figures: the rhetoric of validity in medicine (Bradford Hill Memorial Lecture 1999).

    abstract::Austin Bradford Hill was once a friend to The Lancet, but, as occasionally happens, friends fall out. The great legacy of his association with the journal, however, was Principles of Medical Statistics. As each edition was succeeded by another--the first in 1937, the last in 1991--he seemed to shift his view about the...

    journal_title:Statistics in medicine

    pub_type:

    doi:10.1002/1097-0258(20001215)19:23<3149::aid-sim617>

    authors: Horton R

    更新日期:2000-12-15 00:00:00

  • Variance estimation of a survival function for interval-censored survival data.

    abstract::Interval-censored survival data often occur in medical studies, especially in clinical trials. In this case, many authors have considered estimation of a survival function. There is, however, relatively little discussion on estimating the variance of estimated survival functions. For right-censored data, a special cas...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.719

    authors: Sun J

    更新日期:2001-04-30 00:00:00

  • Adjustments to the Mantel-Haenszel chi-square statistic and odds ratio variance estimator when the data are clustered.

    abstract::Dependence between observations on a dichotomous variable renders invalid the usual chi-square tests of independence and inflates the variances of parameter estimates. Such a situation occurs, for example, when subjects consist of members of the same family or with repeated observations on the same person. In this pap...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.4780060408

    authors: Donald A,Donner A

    更新日期:1987-06-01 00:00:00

  • Estimating the cumulative mean function for history process with time-dependent covariates and censoring mechanism.

    abstract::In this paper, an approach to estimating the cumulative mean function for history process with time dependent covariates and right censored time-to-event variable is developed using the combined technique of joint modeling and inverse probability weighting method. The consistency of proposed estimator is derived. Theo...

    journal_title:Statistics in medicine

    pub_type: 杂志文章

    doi:10.1002/sim.6998

    authors: Deng D

    更新日期:2016-11-10 00:00:00