The representation of heart development in the gene ontology.

Abstract:

:An understanding of heart development is critical in any systems biology approach to cardiovascular disease. The interpretation of data generated from high-throughput technologies (such as microarray and proteomics) is also essential to this approach. However, characterizing the role of genes in the processes underlying heart development and cardiovascular disease involves the non-trivial task of data analysis and integration of previous knowledge. The Gene Ontology (GO) Consortium provides structured controlled biological vocabularies that are used to summarize previous functional knowledge for gene products across all species. One aspect of GO describes biological processes, such as development and signaling. In order to support high-throughput cardiovascular research, we have initiated an effort to fully describe heart development in GO; expanding the number of GO terms describing heart development from 12 to over 280. This new ontology describes heart morphogenesis, the differentiation of specific cardiac cell types, and the involvement of signaling pathways in heart development. This work also aligns GO with the current views of the heart development research community and its representation in the literature. This extension of GO allows gene product annotators to comprehensively capture the genetic program leading to the developmental progression of the heart. This will enable users to integrate heart development data across species, resulting in the comprehensive retrieval of information about this subject. The revised GO structure, combined with gene product annotations, should improve the interpretation of data from high-throughput methods in a variety of cardiovascular research areas, including heart development, congenital cardiac disease, and cardiac stem cell research. Additionally, we invite the heart development community to contribute to the expansion of this important dataset for the benefit of future research in this area.

journal_name

Dev Biol

journal_title

Developmental biology

authors

Khodiyar VK,Hill DP,Howe D,Berardini TZ,Tweedie S,Talmud PJ,Breckenridge R,Bhattarcharya S,Riley P,Scambler P,Lovering RC

doi

10.1016/j.ydbio.2011.03.011

subject

Has Abstract

pub_date

2011-06-01 00:00:00

pages

9-17

issue

1

eissn

0012-1606

issn

1095-564X

pii

S0012-1606(11)00175-8

journal_volume

354

pub_type

杂志文章
  • Identification of a major polypeptide component of the sea urchin fertilization envelope.

    abstract::A monoclonal antibody (MAb No. 25-16), raised against purified cortical secretory vesicles (CVs) from the eggs of Strongylocentrotus purpuratus, has been used to identify a previously uncharacterized CV-derived polypeptide component of the sea urchin fertilization envelope (FE). MAb No. 25-16, an IgG1, bound to a grou...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(89)90210-8

    authors: Vater CA,Jackson RC

    更新日期:1989-03-01 00:00:00

  • Differential regulation of gamma-crystallin genes during mouse lens development.

    abstract::Using gene-specific probes derived from four mouse gamma-crystallin cDNAs, we have examined the regulation of different members of the mouse gamma-crystallin gene family during lens development. Our analysis revealed that, while the different gamma-crystallin genes appear to be coordinately activated during embryogene...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(87)90227-2

    authors: Murer-Orlando M,Paterson RC,Lok S,Tsui LC,Breitman ML

    更新日期:1987-01-01 00:00:00

  • Identification of DNA-binding protein(s) in the developing heart.

    abstract::An antiserum (anti-H2) directed at the second helix of the helix-loop-helix (HLH) protein MyoD1 reacts with a protein expressed during avian cardiac myocyte differentiation. Indirect immunohistochemical whole mount staining with anti-H2 detected a protein expressed in stage 11 hearts, but not in hearts of older embryo...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.1993.1088

    authors: Litvin J,Montgomery MO,Goldhamer DJ,Emerson CP Jr,Bader DM

    更新日期:1993-04-01 00:00:00

  • Constitutive activation of hedgehog signaling adversely affects epithelial cell fate during palatal fusion.

    abstract::Cleft palate is one of the most common craniofacial congenital defects in humans. It is associated with multiple genetic and environmental risk factors, including mutations in the genes encoding signaling molecules in the sonic hedgehog (Shh) pathway, which are risk factors for cleft palate in both humans and mice. Ho...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2018.07.003

    authors: Li J,Yuan Y,He J,Feng J,Han X,Jing J,Ho TV,Xu J,Chai Y

    更新日期:2018-09-01 00:00:00

  • Human NUP98-HOXA9 promotes hyperplastic growth of hematopoietic tissues in Drosophila.

    abstract::Acute myeloid leukemia (AML) is a complex malignancy with poor prognosis. Several genetic lesions can lead to the disease. One of these corresponds to the NUP98-HOXA9 (NA9) translocation that fuses sequences encoding the N-terminal part of NUP98 to those encoding the DNA-binding domain of HOXA9. Despite several studie...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2016.11.003

    authors: Baril C,Gavory G,Bidla G,Knævelsrud H,Sauvageau G,Therrien M

    更新日期:2017-01-01 00:00:00

  • Ectopic induction of dorsal mesoderm by overexpression of Xwnt-8 elevates the neural competence of Xenopus ectoderm.

    abstract::The ectoderm of early Xenopus gastrula is competent to become induced to neural tissue, but dorsal ectoderm is more neural competent than ventral ectoderm. It is a tenable, but as yet untested possibility that the higher neural competence of dorsal gastrula ectoderm is dependent on the presence of the dorsal mesoderm....

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(92)90168-g

    authors: Otte AP,Moon RT

    更新日期:1992-07-01 00:00:00

  • Growing dictyate oocytes, but not early preimplantation embryos, of the mouse display high levels of DNA homologous recombination by single-strand annealing and lack DNA nonhomologous end joining.

    abstract::We have investigated the ability of growing dictyate oocytes and early preimplantation embryos of the mouse to process extrachromosomal DNA molecules with free ends by intranuclearly microinjecting DNA fragments containing a region of homology of various extent at either the 5' or 3' terminus. Homologous recombination...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.2001.0199

    authors: Fiorenza MT,Bevilacqua A,Bevilacqua S,Mangia F

    更新日期:2001-05-01 00:00:00

  • Forkhead transcription factor Foxf2 (LUN)-deficient mice exhibit abnormal development of secondary palate.

    abstract::The forkhead genes encode a transcription factor involved in embryogenesis and pattern formation in multicellular organisms. They are mammalian transcriptional regulators that bind DNA as a monomer through their forkhead domain. The Foxf2 (LUN) mRNA is expressed in the mesenchyme directly adjacent to the ectoderm-deri...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/s0012-1606(03)00176-3

    authors: Wang T,Tamakoshi T,Uezato T,Shu F,Kanzaki-Kato N,Fu Y,Koseki H,Yoshida N,Sugiyama T,Miura N

    更新日期:2003-07-01 00:00:00

  • Characterization of Xenopus RalB and its involvement in F-actin control during early development.

    abstract::We describe the characterization and a functional analysis in Xenopus development of RalB, a small G protein. RalB RNA and protein are detectable during oogenesis and early development, but the gene is expressed only weakly in adult tissues. The RalB transcripts are processed by poly(A) extension during oocyte maturat...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.1999.9254

    authors: Moreau J,Lebreton S,Iouzalen N,Mechali M

    更新日期:1999-05-15 00:00:00

  • The effects of angiotensin II and specific angiotensin receptor blockers on embryonic cardiac development and looping patterns.

    abstract::The role of angiotensin II (Ang II) in the early embryonic development of the heart has not been examined. We have used RT-PCR to identify mRNA for angiotensinogen, angiotensin-converting enzyme, and the Ang II AT1 and AT2 receptors in embryonic day 10.25 Sprague-Dawley rats, and have used confocal microscopy to local...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.1997.8764

    authors: Price RL,Carver W,Simpson DG,Fu L,Zhao J,Borg TK,Terracio L

    更新日期:1997-12-15 00:00:00

  • Post-transcriptional mechanisms contribute to Etv2 repression during vascular development.

    abstract::etv2 is an endothelial-specific ETS transcription factor that is essential for vascular differentiation and morphogenesis in vertebrates. While recent data suggest that Etv2 is dynamically regulated during vascular development, little is known about the mechanisms involved in this process. Here, we find that etv2 tran...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2013.08.028

    authors: Moore JC,Sheppard-Tindell S,Shestopalov IA,Yamazoe S,Chen JK,Lawson ND

    更新日期:2013-12-01 00:00:00

  • Developmental change of a depolarization-induced sodium permeability in the oocyte of Xenopus laevis.

    abstract::In the full grown oocyte of Xenopus laevis, a sodium permeability can be induced by depolarization to positive potential with current injection. Voltage-clamp analysis has shown that depolarization causes a long-lasting modification of the membrane during which voltage-gated sodium channels become functional. In the p...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(83)90302-0

    authors: Baud C

    更新日期:1983-10-01 00:00:00

  • Notch signaling during larval and juvenile development in the polychaete annelid Capitella sp. I.

    abstract::Notch signaling is involved in a large range of developmental processes, and has been functionally implicated in body plan segmentation in two of the three diverse segmented taxa, the vertebrates and arthropods. Here we investigate expression of Notch, Delta, and hes gene homologues during larval and juvenile developm...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2008.04.015

    authors: Thamm K,Seaver EC

    更新日期:2008-08-01 00:00:00

  • Cell adhesion molecule SC1/DMGRASP is expressed on growing axons of retina ganglion cells and is involved in mediating their extension on axons.

    abstract::We determined expression and function of a cell membrane protein in the developing chick retinotectal system identified by a monoclonal antibody (mAb 4H5) and the corresponding antiserum. Our data revealed that the protein shares a series of properties, including the N-terminal amino acid sequence, with a cell adhesio...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.1994.1284

    authors: Pollerberg GE,Mack TG

    更新日期:1994-10-01 00:00:00

  • The patterns on chondrogenesis of cells from facial primordia of chick embryos in micromass culture.

    abstract::Chondrogenesis of mesenchymal cells from the frontonasal mass, mandibles and maxillae of stage-24 chick embryos has been investigated in micromass (high-density) cultures. Distinct differences in the amount and pattern of cartilage differentiation are found. In cultures of frontonasal mass cells, a central sheet of ca...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(86)90349-0

    authors: Wedden SE,Lewin-Smith MR,Tickle C

    更新日期:1986-09-01 00:00:00

  • PDGFB regulates the development of the labyrinthine layer of the mouse fetal placenta.

    abstract::PDGFB is a growth factor which is vital for the completion of normal prenatal development. In this study, we report the phenotypic analysis of placentas from mouse conceptuses that lack a functional PDGFB or PDGFRbeta gene. Placentas of both types of mutant exhibit changes in the labyrinthine layer, including dilated ...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.1999.9306

    authors: Ohlsson R,Falck P,Hellström M,Lindahl P,Boström H,Franklin G,Ahrlund-Richter L,Pollard J,Soriano P,Betsholtz C

    更新日期:1999-08-01 00:00:00

  • Evolutionary developmental biology its roots and characteristics.

    abstract::The rise of evolutionary developmental biology was not the progressive isolation and characterization of developmental genes and gene networks. Many obstacles had to be overcome: the idea that all genes were more or less involved in development; the evidence that developmental processes in insects had nothing in commo...

    journal_title:Developmental biology

    pub_type: 历史文章,杂志文章

    doi:10.1016/j.ydbio.2011.03.013

    authors: Morange M

    更新日期:2011-09-01 00:00:00

  • Multiple roles for activin-like kinase-2 signaling during mouse embryogenesis.

    abstract::The members of the transforming growth factor-beta (TGF-beta) superfamily are secreted proteins that interact with cell-surface receptors to elicit signals that regulate a variety of biological processes during vertebrate embryogenesis. Alk2, also known as ActRIA, Tsk7L, and SKR1, encodes a type I TGF-beta family rece...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.1999.9378

    authors: Mishina Y,Crombie R,Bradley A,Behringer RR

    更新日期:1999-09-15 00:00:00

  • Development of the excitation-contraction coupling apparatus in skeletal muscle: association of sarcoplasmic reticulum and transverse tubules with myofibrils.

    abstract::The formation and maintenance of the highly regular organization of membrane systems and proteins in striated muscle require specific membrane-membrane and membrane-cytoskeleton interactions. The development of T-tubules and sarcoplasmic reticulum (SR) was followed in gastrocnemius muscle fibers from chicken embryos b...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.1993.1292

    authors: Flucher BE,Takekura H,Franzini-Armstrong C

    更新日期:1993-11-01 00:00:00

  • The novel Smad protein Expansion regulates the receptor tyrosine kinase pathway to control Drosophila tracheal tube size.

    abstract::Tubes with distinct shapes and sizes are critical for the proper function of many tubular organs. Here we describe a unique phenotype caused by the loss of a novel, evolutionarily-conserved, Drosophila Smad-like protein, Expansion. In expansion mutants, unicellular and intracellular tracheal branches develop bubble-li...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2014.06.016

    authors: Iordanou E,Chandran RR,Yang Y,Essak M,Blackstone N,Jiang L

    更新日期:2014-09-01 00:00:00

  • Hoxd13 binds in vivo and regulates the expression of genes acting in key pathways for early limb and skeletal patterning.

    abstract::5' HoxD genes are required for the correct formation of limb skeletal elements. Hoxd13, the most 5'-located HoxD gene, is important for patterning the most distal limb region, and its mutation causes human limb malformation syndromes. The mechanisms underlying the control of developmental processes by Hoxd13, and by H...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2008.02.048

    authors: Salsi V,Vigano MA,Cocchiarella F,Mantovani R,Zappavigna V

    更新日期:2008-05-15 00:00:00

  • Development and sensitivity to serotonin of Drosophila serotonergic varicosities in the central nervous system.

    abstract::Serotonin is a classical small-molecule neurotransmitter with known effects on developmental processes. Previous studies have shown a developmental role for serotonin in the fly peripheral nervous system. In this study, we show that serotonin can modulate the development of serotonergic varicosities within the fly cen...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2005.07.025

    authors: Sykes PA,Condron BG

    更新日期:2005-10-01 00:00:00

  • The fub-1 mutation blocks initial myofibril formation in zebrafish muscle pioneer cells.

    abstract::The earliest muscle in zebrafish arises from iterated sets of two to six cells in each somite, the muscle pioneers (MP). MP develop synchronously in young trunk myotomes adjacent to the notochord, precisely where the horizontal myoseptum will form. They elongate without cell fusion and differentiate hours earlier than...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(91)90314-s

    authors: Felsenfeld AL,Curry M,Kimmel CB

    更新日期:1991-11-01 00:00:00

  • Differential susceptibilities of spinal cord neurons to retinoic acid-induced survival and differentiation.

    abstract::In a previous study, we demonstrated trophic effects of vitamin A and its active metabolite, retinoic acid (RA), on perinatal rat spinal cord neurons and astrocytes in vitro. We now report that RA increases the survival of cholinergic neurons without affecting that of GABAergic neurons. These results were supported by...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(91)90435-6

    authors: Wuarin L,Sidell N

    更新日期:1991-04-01 00:00:00

  • The Drosophila Wilms׳ Tumor 1-Associating Protein (WTAP) homolog is required for eye development.

    abstract::Sine Oculis (So), the founding member of the SIX family of homeobox transcription factors, binds to sequence specific DNA elements and regulates transcription of downstream target genes. It does so, in part, through the formation of distinct biochemical complexes with Eyes Absent (Eya) and Groucho (Gro). While these c...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2014.03.012

    authors: Anderson AM,Weasner BP,Weasner BM,Kumar JP

    更新日期:2014-06-15 00:00:00

  • The role of Nanos homologue in gametogenesis and blastogenesis with special reference to male germ cell formation in the colonial ascidian, Botryllus primigenus.

    abstract::We examined the structure, expression, and possible functions of a nanos homologue during gametogenesis and blastogenesis in the colonial ascidian Botryllus primigenus. An approximately 1.3-kb-long cDNA was cloned; it was termed BpNos since the deduced amino acid sequence (288 aa) contained 2 Nanos-like CCHC zinc fing...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2008.08.023

    authors: Sunanaga T,Satoh M,Kawamura K

    更新日期:2008-12-01 00:00:00

  • An octamer element is required for the expression of the alpha H2B histone gene during the early development of the sea urchin.

    abstract::Early (alpha) histone genes are one of several histone gene families in the sea urchin genome. They are expressed at high levels in blastula-stage embryos and are inactivated by the early gastrula stage. By microinjecting mutant early H2B genes into sea urchin zygotes and monitoring their transcriptional activity in b...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(92)90248-f

    authors: Bell J,Char BR,Maxson R

    更新日期:1992-04-01 00:00:00

  • The interaction of epithelial Ihha and mesenchymal Fgf10 in zebrafish esophageal and swimbladder development.

    abstract::Developmental patterning and growth of the vertebrate digestive and respiratory tracts requires interactions between the epithelial endoderm and adjacent mesoderm. The esophagus is a specialized structure that connects the digestive and respiratory systems and its normal development is critical for both. Shh signaling...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2011.08.024

    authors: Korzh S,Winata CL,Zheng W,Yang S,Yin A,Ingham P,Korzh V,Gong Z

    更新日期:2011-11-15 00:00:00

  • Early skeletal muscle development proceeds normally in parthenogenetic mouse embryos.

    abstract::In mouse chimeras with parthenogenetic cell contribution, the skeletal musculature appears to be largely devoid of parthenogenetically derived cells. To analyze the appearance and early distribution of myotomal cells in parthenotes, we determined the expression of the muscle-specific transcription factors myogenin, MY...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.1994.1004

    authors: Fundele R,Bober E,Arnold HH,Grim M,Bender R,Wilting J,Christ B

    更新日期:1994-01-01 00:00:00

  • Signals and myogenic regulatory factors restrict pax3 and pax7 expression to dermomyotome-like tissue in zebrafish.

    abstract::Pax3/7 paired homeodomain transcription factors are important markers of muscle stem cells. Pax3 is required upstream of myod for lateral dermomyotomal cells in the amniote somite to form particular muscle cells. Later Pax3/7-dependent cells generate satellite cells and most body muscle. Here we analyse early myogenes...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2006.10.009

    authors: Hammond CL,Hinits Y,Osborn DP,Minchin JE,Tettamanti G,Hughes SM

    更新日期:2007-02-15 00:00:00