Structure-activity relationships of piscidin 4, a piscine antimicrobial peptide.

Abstract:

:Piscidin 4, an antimicrobial peptide recently isolated from mast cells of hybrid striped bass (Morone chrysops female × Morone saxatilis male), is unusual in that it is twice as long (44 amino acids) as the typical members of the piscidin family. We previously showed that native piscidin 4 had a modified amino acid at position 20, but synthetic piscidin 4 (having an unmodified Trp at position 20) had similar potent activity against a number of both human and fish bacterial pathogens. In this study, the structure and membrane topology of synthetic piscidin 4 were examined using liposomes as model bilayers. Circular dichroism analyses revealed that it had a disordered structure in aqueous solution and folded to form a relatively weak α-helical structure in both membrane-mimetic trifluoroethanol solutions and liposome suspensions. Fluorescence data (piscidin 4 embedded in liposomes) and leakage experiments indicated that piscidin 4 interacted strongly with the hydrophobic part of the liposome. Binding of piscidin 4 to liposomes induced significant blue shifts of the emission spectra of the single Trp residue (Trp20). Quenching of Trp20 by water-soluble quencher (either acrylamide or I-) indicated that the fluorescence of Trp20 decreased more in the presence of liposomes than in buffer solution, thus revealing that Trp20 is less accessible to the quenchers in the presence of liposomes. The relative leakage abilities of piscidin 4 (1 μM) with liposomes were in the following order: DPPC (100%)≥EYPC (94%)>DPPC/DPPG (65%)>EYPC/EYPG (0%). This high activity against DPPC and EYPC liposomes was contrary to our data suggesting that piscidin 4 has a much weaker tendency to form an α-helix than other piscidins, such as piscidin 1. However, the structural similarity of protozoan membranes to EYPC liposomes might explain our discovery of the potent activity of piscidin 4 against the important skin/gill parasite ich (Ichthyophthirius multifiliis), but its negligible hemolytic activity against vertebrate membranes (hybrid striped bass or human erythrocytes). It also suggests that other conformation(s) in addition to the α-helix of this peptide may be responsible for its selective activity. This differential toxicity also suggests that piscidin 4 plays a significant role in the innate defense system of hybrid striped bass and may be capable of functioning extracellularly.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Park NG,Silphaduang U,Moon HS,Seo JK,Corrales J,Noga EJ

doi

10.1021/bi101395j

subject

Has Abstract

pub_date

2011-04-26 00:00:00

pages

3288-99

issue

16

eissn

0006-2960

issn

1520-4995

journal_volume

50

pub_type

杂志文章
  • Structural study of spectrin from human erythrocyte membranes.

    abstract::Human erythrocyte spectrin prepared from fresh blood is a mixture of different association states. Depending on the manner of preparation, the two-chain dimer or the tetramer predominates. These forms are not in rapid thermodynamic equilibrium. The molecular weight of the dimer by sedimentation and diffusion and by li...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00644a028

    authors: Kam Z,Josephs R,Eisenberg H,Gratzer WB

    更新日期:1977-12-13 00:00:00

  • Ceruloplasmin copper induces oxidant damage by a redox process utilizing cell-derived superoxide as reductant.

    abstract::Oxidative damage by transition metals bound to proteins may be an important pathogenic mechanism. Ceruloplasmin (Cp) is a Cu-containing plasma protein thought to be involved in oxidative modification of lipoproteins. We have previously shown that Cp increased cell-mediated low-density lipoprotein (LDL) oxidation by a ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981137t

    authors: Mukhopadhyay CK,Fox PL

    更新日期:1998-10-06 00:00:00

  • Identification of a region of the ileal-type sodium/bile acid cotransporter interacting with a competitive bile acid transport inhibitor.

    abstract::Drug intervention that prevents reabsorption of circulating bile acids by the apical (ileal) sodium/bile acid cotransporter (ASBT) may be a promising new therapy for lowering of plasma cholesterol. 2164U90 is a benzothiazepine-based competitive inhibitor of bile acid transport with K(i) values of approximately 10 and ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0205404

    authors: Hallén S,Björquist A,Ostlund-Lindqvist AM,Sachs G

    更新日期:2002-12-17 00:00:00

  • FeNO structure in distal pocket mutants of myoglobin based on resonance Raman spectroscopy.

    abstract::FeNO vibrational frequencies were investigated for a series of myoglobin mutants using isotope-edited resonance Raman spectra of (15/14)NO adducts, which reveal the FeNO and NO stretching modes. The latter give rise to doublet bands, as a result of Fermi resonances with coincident porphyrin vibrations; these doublets ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026395b

    authors: Coyle CM,Vogel KM,Rush TS 3rd,Kozlowski PM,Williams R,Spiro TG,Dou Y,Ikeda-Saito M,Olson JS,Zgierski MZ

    更新日期:2003-05-06 00:00:00

  • Significant catalytic roles for Glu47 and Gln 110 in all four of the C-C bond-making and -breaking steps of the reactions of acetohydroxyacid synthase II.

    abstract::Acetohydroxy acid synthase (AHAS) is a thiamin diphosphate (ThDP)-dependent enzyme that catalyzes the first common step in the biosynthesis of branched-chain amino acids, condensation of pyruvate with a second 2-ketoacid to form either acetolactate or acetohydroxybutyrate. AHAS isozyme II from Escherichia coli is spec...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi102051h

    authors: Vyazmensky M,Steinmetz A,Meyer D,Golbik R,Barak Z,Tittmann K,Chipman DM

    更新日期:2011-04-19 00:00:00

  • Mechanism Underlying Anti-Markovnikov Addition in the Reaction of Pentalenene Synthase.

    abstract::Most terpene synthase reactions follow Markovnikov rules for formation of high-energy carbenium ion intermediates. However, there are notable exceptions. For example, pentalenene synthase (PS) undergoes an initial anti-Markovnikov cyclization reaction followed by a 1,2-hydride shift to form an intermediate humulyl cat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00518

    authors: Matos JO,Kumar RP,Ma AC,Patterson M,Krauss IJ,Oprian DD

    更新日期:2020-09-08 00:00:00

  • The stretching frequencies of bound alkyl isocyanides indicate two distinct ligand orientations within the distal pocket of myoglobin.

    abstract::The FTIR spectra for alkyl isocyanides (CNRs) change from a single nu(CN) band centered at approximately 2175 cm(-1) to two peaks at approximately 2075 and approximately 2125 cm(-1) upon binding to sperm whale myoglobin (Mb). The low- and high-frequency peaks have been assigned to in and out conformations, respectivel...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100172c

    authors: Blouin GC,Olson JS

    更新日期:2010-06-22 00:00:00

  • Circular dichroism studies on the interaction of tryptophan synthase with pyridoxal 5'-phosphate.

    abstract::The interaction between the beta 2 subunit of tryptophan synthase and the coenzyme pyridoxal 5'-phosphate (PLP) is characterized by induced circular dichroism (CD) in the near-UV (260-285 nm) and in the visible region (320-480 nm, extrinsic Cotton effect). Because of its high mean residue ellipticity ([theta] = 56 deg...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00525a017

    authors: Balk H,Merkl I,Bartholmes P

    更新日期:1981-10-27 00:00:00

  • Substrate binding to chloramphenicol acetyltransferase: evidence for negative cooperativity from equilibrium and kinetic constants for binary and ternary complexes.

    abstract::Chloramphenicol acetyltransferase (CAT) catalyzes the acetyl-CoA-dependent acetylation of chloramphenicol by a ternary complex mechanism with a rapid equilibrium and essentially random order of addition of substrates. Such a kinetic mechanism for a two-substrate reaction provides an opportunity to compare the affinity...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00108a029

    authors: Ellis J,Bagshaw CR,Shaw WV

    更新日期:1991-11-05 00:00:00

  • Stopped-flow analysis on anion binding to blue-form halorhodopsin from Natronobacterium pharaonis: comparison with the anion-uptake process during the photocycle.

    abstract::Pharaonis halorhodopsin (phR), the light-driven chloride ion pump from Natronobacterium pharaonis with C-terminal histidine tag, was expressed in Escherichia coli cells. The protein was solubilized with 0.1% n-dodecyl beta-D-maltopyranoside and purified with a nickel column. Removal of Cl- from the medium yields blue ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011788g

    authors: Sato M,Kanamori T,Kamo N,Demura M,Nitta K

    更新日期:2002-02-19 00:00:00

  • Mammalian folylpoly-gamma-glutamate synthetase. 1. Purification and general properties of the hog liver enzyme.

    abstract::Folylpolyglutamate synthetase was purified 30,000-150,000-fold from hog liver. Purification required the use of protease inhibitors, and the protein was purified to homogeneity in two forms. Both forms of the enzyme were monomers of Mr 62,000 and had similar specific activities. The specific activity of the homogeneou...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00376a024

    authors: Cichowicz DJ,Shane B

    更新日期:1987-01-27 00:00:00

  • Recognition of G-U mismatches by tris(4,7-diphenyl-1,10-phenanthroline)rhodium(III).

    abstract::The coordination complex tris(4,7-diphenyl-1,10-phenanthroline)rhodium(III) [Rh(DIP)3(3+)], which promotes RNA cleavage upon photoactivation, has been shown to target specifically guanine-uracil (G-U) mismatches in double-helical regions of folded RNAs. Photoactivated cleavage by Rh(DIP)3(3+) has been examined on a se...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00139a001

    authors: Chow CS,Barton JK

    更新日期:1992-06-23 00:00:00

  • Kinetic and equilibrium alpha-secondary tritium isotope effects on reactions catalyzed by dCMP hydroxymethylase from bacteriophage T4.

    abstract::Deoxycytidylate (dCMP) hydroxymethylase (CH) catalyzes the formation of 5-(hydroxymethyl)-dCMP, essential for DNA synthesis in phage T4, from dCMP and methylenetetrahydrofolate (CH2THF). The nucleotide analog 5-fluorodeoxuridylate (FdUMP) stoichiometrically inactivates CH by formation of a covalent complex containing ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00248a014

    authors: Graves KL,Hardy LW

    更新日期:1994-11-08 00:00:00

  • Purification, characterization, and fibrinogen cleavage sites of three fibrinolytic enzymes from the venom of Crotalus basiliscus basiliscus.

    abstract::Three distinct fibrinolytic enzymes have been purified from the venom of Crotalus basiliscus basiliscus (the Mexican west coast rattlesnake). The high-performance liquid chromatography-based purification comprised the following steps: (a) hydrophobic interaction chromatography; (b) hydroxylapatite chromatography; (c) ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00134a003

    authors: Retzios AD,Markland FS Jr

    更新日期:1992-05-19 00:00:00

  • Structure and mechanism of copper- and nickel-substituted analogues of metallo-beta-lactamase L1.

    abstract::In an effort to further probe metal binding to metallo-beta-lactamase L1 (mbetal L1), Cu- (Cu-L1) and Ni-substituted (Ni-L1) L1 were prepared and characterized by kinetic and spectroscopic studies. Cu-L1 bound 1.7 equiv of Cu and small amounts of Zn(II) and Fe. The EPR spectrum of Cu-L1 exhibited two overlapping, axia...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802295z

    authors: Hu Z,Spadafora LJ,Hajdin CE,Bennett B,Crowder MW

    更新日期:2009-04-07 00:00:00

  • Phosphinothricin-tripeptide synthetases from Streptomyces viridochromogenes.

    abstract::Phosphinothricyl-alanyl-alanine (Pt tripeptide (Ptt), bialaphos) is a metabolite produced by Streptomyces viridochromogenes and Streptomyces hygroscopicus. It contains the unique phosphinoamino acid phosphinothricin (Pt), which after cleavage from Ptt is active as an inhibitor of glutamine synthetase. We have isolated...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9719410

    authors: Grammel N,Schwartz D,Wohlleben W,Keller U

    更新日期:1998-02-10 00:00:00

  • Time-dependent inhibition of Bacillus stearothermophilus alanine racemase by (1-aminoethyl)phosphonate isomers by isomerization to noncovalent slowly dissociating enzyme-(1-aminoethyl)phosphonate complexes.

    abstract::An alanine racemase encoded by a gene from the thermophilic Gram-positive bacterium Bacillus stearothermophilus is overproduced to 0.3% of the soluble protein when carried on plasmid pICR4 in Escherichia coli [Inagaki, K., Tanizawa, K., Badet, B., Walsh, C. T., Tanaka, H., & Soda, K. (1986) Biochemistry (third paper o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00359a029

    authors: Badet B,Inagaki K,Soda K,Walsh CT

    更新日期:1986-06-03 00:00:00

  • Organization and interaction of cholesterol and phosphatidylcholine in model bilayer membranes.

    abstract::The molecular organization of sterols in liposomes of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) at 37 degrees C is examined by utilizing the fluorescent analogue of cholesterol cholesta-5,7,9-trien-3 beta-ol (cholestatrienol). (1) Cholestatrienol is shown to be indistinguishable from native cholesterol i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00456a027

    authors: Hyslop PA,Morel B,Sauerheber RD

    更新日期:1990-01-30 00:00:00

  • Cellular and enzymic synthesis of sphingomyelin.

    abstract::The synthesis of sphingomyelin was studied in baby hamster kidney cells and in subcellular fractions derived from rat liver. During pulse-chase experiments with [3H]choline in tissue culture cells, the specific radioactivity of sphingomyelin continued to increase after the specific activities of phosphocholine and cyt...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00540a027

    authors: Voelker DR,Kennedy EP

    更新日期:1982-05-25 00:00:00

  • Postulated role of calsequestrin in the regulation of calcium release from sarcoplasmic reticulum.

    abstract::Ca2+ release from heavy sarcoplasmic reticulum (SR) vesicles was induced by 2 mM caffeine, and the amount (A) and the rate constant (k) of Ca2+ release were investigated as a function of the extent of Ca2+ loading. Under both passive and active loading conditions, the A value increased monotonically in parallel to Ca2...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00442a033

    authors: Ikemoto N,Ronjat M,Mészáros LG,Koshita M

    更新日期:1989-08-08 00:00:00

  • Structural domains of apolipoprotein(a) and its interaction with apolipoprotein B-100 in the lipoprotein(a) particle.

    abstract::The structural domains of human apolipoprotein(a) [apo(a)] and its interaction with apolipoprotein B-100 (apo B-100) in the lipoprotein(a) [Lp(a)] particle were investigated by limited proteolysis with thermolysin and cathepsin D. We characterized the proteolytic products by sodium dodecyl sulfate-polyacrylamide gradi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00177a026

    authors: Huby T,Doucet C,Dieplinger H,Chapman J,Thillet J

    更新日期:1994-03-22 00:00:00

  • Probing adenine rings and backbone linkages using base specific isotope-edited Raman spectroscopy: application to group II intron ribozyme domain V.

    abstract::Raman difference spectroscopy is used to probe the properties of a 36-nt RNA molecule, "D5", which lies at the heart of the catalytic apparatus in group II introns. For D5 that has all of its adenine residues labeled with (13)C and (15)N and utilizing Raman difference spectroscopy, we identify the conformationally sen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi902117w

    authors: Chen Y,Eldho NV,Dayie TK,Carey PR

    更新日期:2010-04-27 00:00:00

  • Solution structure of oxidized cytochrome c6 from the green alga Monoraphidium braunii.

    abstract::Cytochrome c6 from Monoraphidium braunii, an 89-amino acid electron transfer protein, has been investigated by NMR in solution, in its oxidized form, at pH 7 and 300 K. By using a combination of COSY, TOCSY, and NOESY experiments, 84% of the proton resonances have been assigned. A total of 1668 experimental NOE constr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972765y

    authors: Banci L,Bertini I,De la Rosa MA,Koulougliotis D,Navarro JA,Walter O

    更新日期:1998-04-07 00:00:00

  • Ligand stabilization of the beta 2 adrenergic receptor: effect of DTT on receptor conformation monitored by circular dichroism and fluorescence spectroscopy.

    abstract::Treatment of the beta 2 adrenergic receptor with the reducing agent dithiothreitol (DTT) is known to abolish ligand binding to the receptor. Interestingly, the loss of binding can be prevented by preoccupation of the receptor with ligand. It is unclear, however, whether the ligand blocks access of DTT to the receptor,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961619+

    authors: Lin S,Gether U,Kobilka BK

    更新日期:1996-11-19 00:00:00

  • Next-Generation Peptide Nucleic Acid Chimeras Exhibit High Affinity and Potent Gene Silencing.

    abstract::We present a new design of mixed-backbone antisense oligonucleotides (ASOs) containing both DNA and peptide nucleic acid (PNA). Previous generations of PNA-DNA chimeras showed low binding affinity, reducing their potential as therapeutics. The addition of a 5'-wing of locked nucleic acid as well as the combination of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00827

    authors: Debacker AJ,Sharma VK,Meda Krishnamurthy P,O'Reilly D,Greenhill R,Watts JK

    更新日期:2019-02-12 00:00:00

  • Characterization of the 2-[(R)-2-hydroxypropylthio]ethanesulfonate dehydrogenase from Xanthobacter strain Py2: product inhibition, pH dependence of kinetic parameters, site-directed mutagenesis, rapid equilibrium inhibition, and chemical modification.

    abstract::Although the short-chain dehydrogenase/reductase (SDR) superfamily contains a very large number of members defined in annotated databases and by biochemical and structural studies, very few SDR enzymes have been identified that have a homologous partner catalyzing the same reaction but with an opposite stereospecifici...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0118005

    authors: Clark DD,Ensign SA

    更新日期:2002-02-26 00:00:00

  • Fluoride inhibition of Klebsiella aerogenes urease: mechanistic implications of a pseudo-uncompetitive, slow-binding inhibitor.

    abstract::Klebsiella aerogenes urease uses a dinuclear nickel active site to catalyze the hydrolysis of urea. Here, we describe the steady-state and pre-steady-state kinetics of urease inhibition by fluoride. Urease is slowly inhibited by fluoride in both the presence and absence of substrate. Steady-state rate studies yield pa...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992287m

    authors: Todd MJ,Hausinger RP

    更新日期:2000-05-09 00:00:00

  • A LIN28-dependent structural change in pre-let-7g directly inhibits dicer processing.

    abstract::Several recent studies have provided evidence that LIN28, a cytoplasmic RNA-binding protein, inhibits the biogenesis of members of the let-7 microRNA family at the Dicer step in both mammals and Caenorhabditis elegans. However, the precise mechanism of inhibition is still poorly understood. Here we report on an in vit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200851d

    authors: Lightfoot HL,Bugaut A,Armisen J,Lehrbach NJ,Miska EA,Balasubramanian S

    更新日期:2011-09-06 00:00:00

  • Recognition of ATGA sequences by the unfused aromatic dication DB293 forming stacked dimers in the DNA minor groove.

    abstract::Furamidine and related diamidines represent a promising series of drugs active against widespread parasites, in particular the Pneumocystic carinii pathogen. In this series, the phenylfuranbenzimidazole diamidine derivative DB293 was recently identified as the first unfused aromatic dication capable of forming stacked...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0108453

    authors: Bailly C,Tardy C,Wang L,Armitage B,Hopkins K,Kumar A,Schuster GB,Boykin DW,Wilson WD

    更新日期:2001-08-21 00:00:00

  • The Inflection Point Hypothesis: The Relationship between the Temperature Dependence of Enzyme-Catalyzed Reaction Rates and Microbial Growth Rates.

    abstract::The temperature dependence of biological rates at different scales (from individual enzymes to isolated organisms to ecosystem processes such as soil respiration and photosynthesis) is the subject of much historical and contemporary research. The precise relationship between the temperature dependence of enzyme rates ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00530

    authors: Prentice EJ,Hicks J,Ballerstedt H,Blank LM,Liáng LNL,Schipper LA,Arcus VL

    更新日期:2020-09-29 00:00:00