Hemorrhagic toxins from Western diamondback rattlesnake (Crotalus atrox) venom: isolation and characterization of five toxins and the role of zinc in hemorrhagic toxin e.

Abstract:

:Five previously unknown hemorrhagic proteins, designated hemorrhagic toxins a,b,c,d, and e, were isolated from the venom of the western diamondback rattlesnake (Crotalus atrox). Molecular weights of hemorrhagic toxins a-e were determined to be 68 000, 24 000, 24 000, 24 000, and 25 700, respectively, by sodium dodecyl sulfate-phosphate gel electrophoresis using various polyacrylamide gel concentrations. Amino acid composition showed a total of 636, 200, 213, 214, and 219 amino acids for hemorrhagic toxins a-e, respectively. All the hemorrhagic toxins were found to lose their hemorrhagic activities with the metal chelators ethylenediaminetetraacetic acid and 1, 10-phenanthroline. All the hemorrhagic toxins were found to contain approximately 1 mol of zinc/mol of toxin, and they were all demonstrated to be proteolytic when dimethylcasein and dimethylhemoglobin were used as substrates. When zinc was removed from hemorrhagic toxin e with 1,10-phenanthroline, both both the proteolytic and hemorrhagic activities were equally inhibited. When the apohemorrhagic toxin e thus produced was incubated with zinc, the hemorrhagic and proteolytic activities were regenerated to the same extent. CD, UV, and Raman spectroscopy were used to study the structure of native hemorrhagin toxin e as well as the structural changes caused by zinc removal. From CD spectroscopy the native toxin was estimated to consist of 23% alpha helix, 6% beta structure, and 71% random-coil conformation. When over 90% of the zinc was removed, the alpha-helix content dropped from 23 to 7%.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Bjarnason JB,Tu AT

doi

10.1021/bi00609a033

subject

Has Abstract

pub_date

1978-08-08 00:00:00

pages

3395-404

issue

16

eissn

0006-2960

issn

1520-4995

journal_volume

17

pub_type

杂志文章
  • Identification of polyphosphate recognition sites communicating with actin sites on the skeletal myosin subfragment 1 heavy chain.

    abstract::Using the thrombin-cut [68-30 kilodalton (kDa)] myosin subfragment 1 (S-1) whose heavy chain has been selectively split within the central 50-kDa region, at Lys-560, with concomitant specific alterations of the ATPase and actin binding properties [Chaussepied, P., Mornet, D., Audemard, E., Derancourt, J., & Kassab, R....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00369a013

    authors: Chaussepied P,Mornet D,Kassab R

    更新日期:1986-10-21 00:00:00

  • Characterization of Caenorhabditis elegans Nucleosome Assembly Protein 1 Uncovers the Role of Acidic Tails in Histone Binding.

    abstract::Nucleosome assembly proteins (Naps) influence chromatin dynamics by directly binding to histones. Here we provide a comprehensive structural and biochemical analysis of a Nap protein from Caenorhabditis elegans (CeNap1). CeNap1 naturally lacks the acidic N-terminal tail and has a short C-terminal tail compared to many...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b01033

    authors: Sarkar P,Zhang N,Bhattacharyya S,Salvador K,D'Arcy S

    更新日期:2019-01-15 00:00:00

  • One-Enzyme Reverse Transcription qPCR Using Taq DNA Polymerase.

    abstract::Taq DNA polymerase, one of the first thermostable DNA polymerases to be discovered, has been typecast as a DNA-dependent DNA polymerase commonly employed for PCR. However, Taq polymerase belongs to the same DNA polymerase superfamily as the Molony murine leukemia virus reverse transcriptase and has in the past been sh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00778

    authors: Bhadra S,Maranhao AC,Paik I,Ellington AD

    更新日期:2020-12-15 00:00:00

  • Role of the conserved quartets of residues located in the N- and C-terminal halves of the transposon Tn10-encoded metal-tetracycline/H+ antiporter of Escherichia coli.

    abstract::In the putative secondary structure of the transposon Tn10-encoded metal-tetracycline/H+ antiporter [Yamaguchi, et al. (1992) J. Biol. Chem. 267, 7490-7498], Tyr50-XXX-Gln54 in transmembrane helix 2 and Gly80-XXX-Asp84 in helix 3 are thought to face each other in the N-terminal region. At the corresponding positions i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00072a027

    authors: Yamaguchi A,Akasaka T,Kimura T,Sakai T,Adachi Y,Sawai T

    更新日期:1993-06-01 00:00:00

  • A network of conserved interactions regulates the allosteric signal in a glutamine amidotransferase.

    abstract::We have combined equilibrium and steered molecular dynamics (SMD) simulations with principal component and correlation analyses to probe the mechanism of allosteric regulation in imidazole glycerol phosphate (IGP) synthase. An evolutionary analysis of IGP synthase revealed a conserved network of interactions leading f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061708e

    authors: Amaro RE,Sethi A,Myers RS,Davisson VJ,Luthey-Schulten ZA

    更新日期:2007-02-27 00:00:00

  • DNA charge transport within the cell.

    abstract::The unique characteristics of DNA charge transport (CT) have prompted an examination of roles for this chemistry within a biological context. Not only can DNA CT facilitate long-range oxidative damage of DNA, but redox-active proteins can couple to the DNA base stack and participate in long-range redox reactions using...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi501520w

    authors: Grodick MA,Muren NB,Barton JK

    更新日期:2015-02-03 00:00:00

  • Kinetic and spectroscopic properties of the YZ* radical in Ca2+- and Cl--depleted photosystem II preparations.

    abstract::Depletion of Ca2+ and/or Cl- ions from PSII membranes blocks the electron-transfer reactions that precede O2 evolution on the oxidizing side of the enzyme. Illumination of these inhibited preparations at 273 K generates a paramagnetic species that is detectable by low-temperature (T < 20 K) EPR as a signal in the g = ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972980e

    authors: Lydakis-Simantiris N,Dorlet P,Ghanotakis DF,Babcock GT

    更新日期:1998-05-05 00:00:00

  • Critical side-chain interactions at a subunit interface in the Arc repressor dimer.

    abstract::In the Arc repressor dimer, the side chains of Ile37 and Val41 in alpha-helix B pack against each other and against the symmetry-related side chains of Ile37' and Val41' in alpha-helix B' to form part of the hydrophobic core and the dimer interface. Following combinatorial mutagenesis of these positions, only the wild...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00010a025

    authors: Milla ME,Sauer RT

    更新日期:1995-03-14 00:00:00

  • Engineering of the nonspecific phospholipase C from Bacillus cereus: replacement of glutamic acid-4 by alanine results in loss of interfacial catalysis and enhanced phosphomonoesterase activity.

    abstract::The nonspecific phospholipase C from Bacillus cereus is a zinc metalloenzyme that catalyzes the hydrolysis of phospholipids to yield diacylglycerol and a phosphate monoester. Glu-4 has been proposed as a potential candidate for the general base in the hydrolysis reaction and was shown to interact with the substrate he...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972751s

    authors: Tan CA,Roberts MF

    更新日期:1998-03-24 00:00:00

  • Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2).

    abstract::G.U pairs occur frequently and have many important biological functions. The stability of symmetric tandem G.U motifs depends both on the adjacent Watson-Crick base pairs, e.g., 5'G > 5'C, and the sequence of the G.U pairs, i.e., 5'-UG-3' > 5'-GU-3', where an underline represents a nucleotide in a G.U pair [Wu, M., Mc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:

    authors: Chen X,McDowell JA,Kierzek R,Krugh TR,Turner DH

    更新日期:2000-08-01 00:00:00

  • ATP cross-linked to Escherichia coli single-strand DNA-binding protein can be utilized by the catalytic center of primase as initiating nucleotide for primer RNA synthesis on phage G4oric template.

    abstract::We report a new observation of the role of Escherichia coli single-strand DNA binding protein (SSB) in synthesis of primer RNA (pRNA) catalyzed by.E.coli primase on the SSB-coated phage G4oric template. Using a set of ATP priming substrates with reactive groups attached to the 5' gamma-phosphate on different length "a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972455f

    authors: Godson GN,Mustaev AA,Sun W

    更新日期:1998-03-17 00:00:00

  • NMR determination of pKa values for Asp, Glu, His, and Lys mutants at each variable contiguous enzyme-inhibitor contact position of the turkey ovomucoid third domain.

    abstract::From the larger set of 191 variants at all the variable contact positions in the turkey ovomucoid third domain, we selected a subset that consists of Asp, Glu, His, and Lys residues at eight of the nine contiguous P6-P3' positions (residues 13-21), the exception being P3-Cys16 which is involved in a conserved disulfid...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0269512

    authors: Song J,Laskowski M Jr,Qasim MA,Markley JL

    更新日期:2003-03-18 00:00:00

  • Differential regulation of WASP and N-WASP by Cdc42, Rac1, Nck, and PI(4,5)P2.

    abstract::The Wiskott-Aldrich syndrome protein (WASP) and neural WASP (N-WASP) are key players in regulating actin cytoskeleton via the Arp2/3 complex. It has been widely reported that the WASP proteins are activated by Rho family small GTPase Cdc42 and that Rac1 acts through SCAR/WAVE proteins. However, a systematic study of t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi062152y

    authors: Tomasevic N,Jia Z,Russell A,Fujii T,Hartman JJ,Clancy S,Wang M,Beraud C,Wood KW,Sakowicz R

    更新日期:2007-03-20 00:00:00

  • Fluorescence energy transfer between Ca2+ transport ATPase molecules in artificial membranes.

    abstract::The purified ATPase of sarcoplasmic reticulum was covalently labeled with N-iodoacetyl-N'-(5-sulfo-1-naphthyl)ethylenediamine (1,5-IAEDANS) or with iodoacetamidofluorescein (IAF). In reconstituted vesicles containing both types of ATPase molecules fluorescence energy transfer was observed from the IAEDANS (donor) to t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00626a003

    authors: Vanderkooi JM,Ierokomas A,Nakamura H,Martonosi A

    更新日期:1977-04-05 00:00:00

  • Photooxidation of cytochrome b559 in oxygen-evolving photosystem II.

    abstract::Cytochrome b559 (cyt b559) is an intrinsic and essential component of the photosystem II (PSII) protein complex, but its function, stoichiometry, and electron-transfer kinetics in the physiological system are not well-defined. In this study, we have used flash-detection optical spectroscopy to measure the kinetics and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00161a025

    authors: Buser CA,Diner BA,Brudvig GW

    更新日期:1992-11-24 00:00:00

  • Gal repressor-operator-HU ternary complex: pathway of repressosome formation.

    abstract::DNA transaction reactions require formation of nucleoprotein complexes that involve multifaceted DNA-protein and protein-protein interactions. Genetic and biochemical studies suggested that the higher order Gal repressosome structure, which governs the transcription of two tandem galpromoters in Escherichia coli, invo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi047720t

    authors: Roy S,Dimitriadis EK,Kar S,Geanacopoulos M,Lewis MS,Adhya S

    更新日期:2005-04-12 00:00:00

  • Interaction and localization of the retinitis pigmentosa protein RP2 and NSF in retinal photoreceptor cells.

    abstract::RP2 is a ubiquitously expressed protein encoded by a gene associated with X-linked retinitis pigmentosa (XLRP), a retinal degenerative disease that causes severe vision loss. Previous in vitro studies have shown that RP2 binds to ADP ribosylation factor-like 3 (Arl3) and activates its intrinsic GTPase activity, but th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1005249

    authors: Holopainen JM,Cheng CL,Molday LL,Johal G,Coleman J,Dyka F,Hii T,Ahn J,Molday RS

    更新日期:2010-09-07 00:00:00

  • Subunit dissociation as a possible mechanism of glucocorticoid receptor activation.

    abstract::For the elucidation of the mechanism of steroid hormone receptor activation, the hydrodynamic properties of the unactivated and activated forms of the nonproteolyzed glucocorticoid receptor from the mouse AtT-20 pituitary tumor cell line were determined. The unactivated, molybdate-stabilized receptor has the following...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00277a038

    authors: Vedeckis WV

    更新日期:1983-04-12 00:00:00

  • Resonance Raman interrogation of the consequences of heme rotational disorder in myoglobin and its ligated derivatives.

    abstract::Resonance Raman spectroscopy is employed to characterize heme site structural changes arising from conformational heterogeneity in deoxyMb and ligated derivatives, i.e., the ferrous CO (MbCO) and ferric cyanide (MbCN) complexes. The spectra for the reversed forms of these derivatives have been extracted from the spect...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801779d

    authors: Rwere F,Mak PJ,Kincaid JR

    更新日期:2008-12-02 00:00:00

  • Molecular properties of p-(dimethylamino)benzaldehyde bound to liver alcohol dehydrogenase: a Raman spectroscopic study.

    abstract::We have studied the binding nature of an aromatic aldehyde to the catalytic site of liver alcohol dehydrogenase from horse (LADH) using preresonance Raman spectroscopy. The compound p-(dimethylamino)benzaldehyde (DABA) is converted to the corresponding alcohol in the presence of nicotinamide adenine dinucleotide (NADH...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00410a023

    authors: Callender R,Chen D,Lugtenburg J,Martin C,Rhee KW,Sloan D,Vandersteen R,Yue KT

    更新日期:1988-05-17 00:00:00

  • Structural dynamics of soluble chloride intracellular channel protein CLIC1 examined by amide hydrogen-deuterium exchange mass spectrometry.

    abstract::Chloride intracellular channel protein 1 (CLIC1) functions as an anion channel in plasma and nuclear membranes when its soluble monomeric form converts to an integral-membrane form. The transmembrane region of CLIC1 is located in its thioredoxin-like domain 1, but the mechanism whereby the protein converts to its memb...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9010607

    authors: Stoychev SH,Nathaniel C,Fanucchi S,Brock M,Li S,Asmus K,Woods VL Jr,Dirr HW

    更新日期:2009-09-08 00:00:00

  • Translesional synthesis on DNA templates containing an estrogen quinone-derived adduct: N2-(2-hydroxyestron-6-yl)-2'-deoxyguanosine and N6-(2-hydroxyestron-6-yl)-2'-deoxyadenosine.

    abstract::Miscoding properties induced by estrogen quinone-derived DNA adducts were analyzed using an in vitro experimental system to quantify base substitutions and deletions. Site-specifically modified oligodeoxynucleotides containing a single N2-(2-hydroxyestron-6-yl)-2'-deoxyguanosine (2-OHE1-N2-dG) or N6-(2-hydroxyestron-6...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981235e

    authors: Terashima I,Suzuki N,Dasaradhi L,Tan CK,Downey KM,Shibutani S

    更新日期:1998-09-29 00:00:00

  • Analyzing topography of membrane-inserted diphtheria toxin T domain using BODIPY-streptavidin: at low pH, helices 8 and 9 form a transmembrane hairpin but helices 5-7 form stable nonclassical inserted segments on the cis side of the bilayer.

    abstract::Low pH-induced membrane insertion by diphtheria toxin T domain is crucial for A chain translocation into the cytoplasm. To define the membrane topography of the T domain, the exposure of biotinylated Cys residues to the cis and trans bilayer surfaces was examined using model membrane vesicles containing a deeply inser...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049354j

    authors: Rosconi MP,Zhao G,London E

    更新日期:2004-07-20 00:00:00

  • Reactions of the sarcoplasmic reticulum calcium adenosinetriphosphatase with adenosine 5'-triphosphate and Ca2+ that are not satisfactorily described by an E1-E2 model.

    abstract::Phosphorylation of the sarcoplasmic reticulum calcium ATPase, E, is first order with kb = 70 +/- 7 s-1 after free enzyme was mixed with saturating ATP and 50 microM Ca2+; this is one-third the rate constant of 220 s-1 for phosphorylation of enzyme preincubated with calcium, cE.Ca2, after being mixed with ATP under the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00398a019

    authors: Stahl N,Jencks WP

    更新日期:1987-12-01 00:00:00

  • Structural Diversity of Amyloid Fibrils and Advances in Their Structure Determination.

    abstract::Protein amyloid fibrils are originally identified as pathological entities in a variety of neurodegenerative diseases such as Alzheimer's disease and Parkinson's disease. Recent studies have revealed that amyloid fibrils also serve as functional protein assemblies to fulfill a wide range of biological functions. Decip...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.9b01069

    authors: Li D,Liu C

    更新日期:2020-02-11 00:00:00

  • Duplex oligodeoxyribonucleotides cross-linked by mitomycin C at a single site: synthesis, properties, and cross-link reversibility.

    abstract::Oligodeoxyribonucleotides cross-linked by reductively activated mitomycin C (MC) were prepared and purified for the first time. The cross-linked products were structurally characterized by nucleoside and MC-nucleoside adduct analysis. Optimal conditions were established for the cross-linking reaction, resulting in hig...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00464a015

    authors: Borowy-Borowski H,Lipman R,Chowdary D,Tomasz M

    更新日期:1990-03-27 00:00:00

  • Effects of temperature and glycerol on the resonance Raman spectra of cytochrome c peroxidase and selected mutants.

    abstract::The high-frequency resonance Raman spectra of FeIII yeast native cytochrome c peroxidase (CCP) and five of its mutants [CCP(MI), Phe-51, Leu-48, Lys-48, Asn-235, and Phe-191] were recorded in phosphate buffer, pH 7.0, and in glycerol/phosphate mixtures at 295 and 10 K. Glycerol induces heme coordination changes in som...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00438a024

    authors: Smulevich G,Mantini AR,English AM,Mauro JM

    更新日期:1989-06-13 00:00:00

  • Interactions between phospholipids and NADH:ubiquinone oxidoreductase (complex I) from bovine mitochondria.

    abstract::NADH:ubiquinone oxidoreductase (complex I) from bovine heart mitochondria is a highly complicated, energy transducing, membrane-bound enzyme. It contains 46 different subunits and nine redox cofactors: a noncovalently bound flavin mononucleotide and eight iron-sulfur clusters. The mechanism of complex I is not known. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051809x

    authors: Sharpley MS,Shannon RJ,Draghi F,Hirst J

    更新日期:2006-01-10 00:00:00

  • Allosteric regulation of glycogen synthase kinase 3β: a theoretical study.

    abstract::Glycogen synthase kinase 3β (GSK-3β) is a serine-threonine kinase belonging to the CMGC family that plays a key role in many biological processes, such as glucose metabolism, cell cycle regulation, and proliferation. Like most protein kinases, GSK-3β is regulated via multiple pathways and sites. We performed all-atom ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100822q

    authors: Buch I,Fishelovitch D,London N,Raveh B,Wolfson HJ,Nussinov R

    更新日期:2010-12-28 00:00:00

  • Endocytosis and degradation of bovine apo- and holo-lactoferrin by isolated rat hepatocytes are mediated by recycling calcium-dependent binding sites.

    abstract::We characterized endocytosis of iron-saturated (holo) and iron-depleted (apo) 125I-labeled bovine lactoferrin (Lf) by isolated rat hepatocytes. Hepatocytes ingested both Lf forms--determined by EGTA/dextran sulfate removal of surface-bound Lf--at maximal endocytic rates of 1.85 and 1.52 fmol cell-1 min-1 for 125I-apo-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00212a046

    authors: McAbee DD,Nowatzke W,Oehler C,Sitaram M,Sbaschnig E,Opferman JT,Carr J,Esbensen K

    更新日期:1993-12-14 00:00:00