Isolation and regional mapping of NotI and EagI clones from human chromosome 21.

Abstract:

:NotI and EagI boundary libraries were constructed for human chromosome 21. One hundred forty-seven clones were isolated from the somatic cell hybrid 72532X-6 and localized using a hybrid mapping panel. After identification of those clones, which were isolated more than once, as well as those probes derived from a previously unrecognized integrated non-chromosome-21 fragment, 58 individual boundary clones (plus 2 additional NotI-EcoRI clones isolated from a flow-sorted library) were localized to 11 separate regions. The distribution of these probes is highly nonrandom, with 50% of the clones located in the distal band 21q22.3. Two probes, Not50 and Eag101, map to regions in the very proximal long arm which may contain the gene responsible for familial Alzheimer's disease (AD1), and Not50 would appear to be more proximal than D21S16 (E9). Twenty-eight probes map to the region between superoxide dismutase (SOD1) and the ETS2 oncogene, which appears to contain genes responsible for many of the phenotypic features of Down syndrome. Twenty clones contain (GT)n repeats, as determined by hybridization to a CA polymer, and should provide additional highly polymorphic probes. Closure of gaps in the physical linkage map of chromosome 21 should be facilitated by the isolation of these probes, as they identify many of the unmethylated CpG-rich islands that have hindered pulsed-field gel analysis. They will also be useful in identifying a set of genes in proximity to NotI and EagI restriction sites, as well as conserved DNA sequences for comparative mapping studies.

journal_name

Genomics

journal_title

Genomics

authors

Gao JZ,Erickson P,Patterson D,Jones C,Drabkin H

doi

10.1016/0888-7543(91)90497-3

subject

Has Abstract

pub_date

1991-05-01 00:00:00

pages

166-72

issue

1

eissn

0888-7543

issn

1089-8646

journal_volume

10

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • Genome-wide identification and comprehensive analysis of Excretory/Secretory proteins in nematodes provide potential drug targets for parasite control.

    abstract::Nematodes are responsible for causing severe diseases in plants, humans and other animals. Infection is associated with the release of Excretory/Secretory (ES) proteins into host cytoplasm and interference with the host immune system which make them attractive targets for therapeutic use. The identification of ES prot...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2018.03.007

    authors: Gahoi S,Singh S,Gautam B

    更新日期:2019-05-01 00:00:00

  • Regional localization of over 300 loci on human chromosome 22 using a somatic cell hybrid mapping panel.

    abstract::A somatic cell hybrid panel, consisting of 25 cell lines, has been developed to localize loci subregionally on chromosome 22. Over 300 markers in the form of STSs or hybridization probes have been assigned to one of 24 unique regions or "bins" using this panel. This ordered collection of markers will aid in the assemb...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0358

    authors: Budarf ML,Eckman B,Michaud D,McDonald T,Gavigan S,Buetow KH,Tatsumura Y,Liu Z,Hilliard C,Driscoll D,Goldmuntz E,Meese E,Zwarthoff EC,Williams S,McDermid H,Dumanski JP,Biegel J,Bell CJ,Emanuel BS

    更新日期:1996-07-15 00:00:00

  • Construction and screening of a cosmid library generated from a somatic cell hybrid bearing human chromosome 15.

    abstract::A cosmid library has been constructed with DNA isolated from a mouse/human hybrid cell line designated A15, which was previously characterized and shown to retain chromosome 15 as the only human material. The library was generated and stored as 34 independent pools of primary colonies at 8-10,000 colonies per pool. Sc...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.4517

    authors: McDaniel LD,Zhang B,Kubiczek E,Ritter M,Huang J,Berard C,Leana-Cox J,Schwartz S,Schultz RA

    更新日期:1997-02-15 00:00:00

  • The proximity of DNA sequences in interphase cell nuclei is correlated to genomic distance and permits ordering of cosmids spanning 250 kilobase pairs.

    abstract::The physical distance between DNA sequences in interphase nuclei was determined using eight cosmids containing fragments of the Chinese hamster genome that span 273 kb surrounding the dihydrofolate reductase (DHFR) gene. The distance between these sequences at the molecular level has been determined previously by rest...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(89)90112-2

    authors: Trask B,Pinkel D,van den Engh G

    更新日期:1989-11-01 00:00:00

  • Human tryptophan oxygenase localized to 4q31: possible implications for alcoholism and other behavioral disorders.

    abstract::A human tryptophan oxygenase clone was isolated by screening a liver cDNA library with a rat tryptophan oxygenase cDNA clone. Analysis showed extensive homology between the rat and the human DNA and protein sequences. The combined use of cell hybrids and in situ hydridization indicated that human tryptophan oxygenase ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90257-f

    authors: Comings DE,Muhleman D,Dietz GW Jr,Donlon T

    更新日期:1991-02-01 00:00:00

  • Characterization of a new mRNA species from the human histamine N-methyltransferase gene.

    abstract::Histamine N-methyltransferase (HNMT), a cytosolic histamine-metabolizing enzyme, is the only known product of the 50-kb human HNMT. Here, a detailed investigation of HNMT products revealed the existence of a new brain mRNA product of HNMT. This species, named HNMT-Short (HNMT-S), encodes a 126-amino-acid protein. Nort...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(03)00236-2

    authors: Barnes WG,Grinde E,Crawford DR,Herrick-Davis K,Hough LB

    更新日期:2004-01-01 00:00:00

  • miRNA biomarkers for predicting overall survival outcomes for head and neck squamous cell carcinoma.

    abstract::Head and neck squamous cell carcinoma (HNSCC) is a malignant tumor of the upper aerodigestive tract. The loss and gain of miRNA function promote cancer development through various mechanisms. RNA sequencing (RNA-seq) and miRNAs sequencing data from the Cancer Genome Atlas (TCGA) was used to show the dysfunctional miRN...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.12.002

    authors: Wu ZH,Zhong Y,Zhou T,Xiao HJ

    更新日期:2021-01-01 00:00:00

  • Knockdown of Gh_A05G1554 (GhDHN_03) and Gh_D05G1729 (GhDHN_04) Dehydrin genes, Reveals their potential role in enhancing osmotic and salt tolerance in cotton.

    abstract::In this investigation, whole-genome identification and functional characterization of the cotton dehydrin genes was carried out. A total of 16, 7, and 7 dehydrin proteins were identified in G. hirsutum, G. arboreum and G. raimondii, respectively. Through RNA sequence data and RT-qPCR validation, Gh_A05G1554 (GhDHN_03)...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2019.11.003

    authors: Kirungu JN,Magwanga RO,Pu L,Cai X,Xu Y,Hou Y,Zhou Y,Cai Y,Hao F,Zhou Z,Wang K,Liu F

    更新日期:2020-03-01 00:00:00

  • Chromosomal mapping of five highly conserved murine homologues of the Drosophila RING finger gene seven-in-absentia.

    abstract::Seven-in-absentia (sina) is epistatic to all other known genes in the sevenless-ras signaling pathway, which mediates R7 photoreceptor formation in the Drosophila eye. The murine genome contains several closely related sina homologues (Siah1A-D, Siah2) that are also likely to participate in ras signaling. As part of a...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.4642

    authors: Holloway AJ,Della NG,Fletcher CF,Largespada DA,Copeland NG,Jenkins NA,Bowtell DD

    更新日期:1997-04-15 00:00:00

  • Structural organization and complete nucleotide sequence of the gene encoding human acid sphingomyelinase (SMPD1).

    abstract::Acid sphingomyelinase (ASM; HGMW-approved symbol, SMPD1) is the lysosomal phosphodiesterase that hydrolyzes sphingomyelin to ceramide and phosphocholine. The deficient activity of this enzyme results in Types A and B Niemann-Pick disease (NPD). The full-length cDNA encoding human ASM has been isolated and characterize...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(92)90366-z

    authors: Schuchman EH,Levran O,Pereira LV,Desnick RJ

    更新日期:1992-02-01 00:00:00

  • Identification of a psoriasis susceptibility candidate gene by linkage disequilibrium mapping with a localized single nucleotide polymorphism map.

    abstract::Psoriasis is a chronic inflammatory disease of the skin with both genetic and environmental risk factors. Here we describe the creation of a single-nucleotide polymorphism (SNP) map spanning 900-1200 kb of chromosome 3q21, which had been previously recognized as containing a psoriasis susceptibility locus, PSORS5. We ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2002.6720

    authors: Hewett D,Samuelsson L,Polding J,Enlund F,Smart D,Cantone K,See CG,Chadha S,Inerot A,Enerback C,Montgomery D,Christodolou C,Robinson P,Matthews P,Plumpton M,Wahlstrom J,Swanbeck G,Martinsson T,Roses A,Riley J,Purvi

    更新日期:2002-03-01 00:00:00

  • Chromosomal distribution of the human cardiovascular transcriptome.

    abstract::On the basis of previous observations in chromosomes 21 and 22, we hypothesize that there is a tissue-specific organization of cardiovascular gene transcripts in the human genome. To examine the distribution of heart-derived transcripts, we assigned a nonredundant set of 4628 fetal and 3574 adult known and uncharacter...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(03)00008-9

    authors: Barrans JD,Ip J,Lam CW,Hwang IL,Dzau VJ,Liew CC

    更新日期:2003-05-01 00:00:00

  • X-linked recessive atrophic macular degeneration from RPGR mutation.

    abstract::We mapped a new X-linked recessive atrophic macular degeneration locus to Xp21.1-p11.4 and show allelic involvement of the gene RPGR, which normally causes severe peripheral retinal degeneration leading to global blindness. Ten affected males whom we examined had primarily macular atrophy causing progressive loss of v...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2002.6815

    authors: Ayyagari R,Demirci FY,Liu J,Bingham EL,Stringham H,Kakuk LE,Boehnke M,Gorin MB,Richards JE,Sieving PA

    更新日期:2002-08-01 00:00:00

  • Structure and evolution of the human prosaposin chromosomal gene.

    abstract::The gene for prosaposin was characterized by sequence analysis of chromosomal DNA to gain insight into the evolution of this locus that encodes four highly conserved sphingolipid activator proteins or saposins. The 13 exons ranged in size from 57 to 1200 bp, while the introns were from 91 to 3812 bp in length. The reg...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(92)90247-p

    authors: Rorman EG,Scheinker V,Grabowski GA

    更新日期:1992-06-01 00:00:00

  • Haplotype analysis of the apolipoprotein gene cluster on human chromosome 11.

    abstract::Members of the apolipoprotein gene cluster (APOA1/C3/A4/A5) on human chromosome 11q23 play an important role in lipid metabolism. Polymorphisms in both APOA5 and APOC3 are strongly associated with plasma triglyceride concentrations. The close genomic locations of these two genes as well as their functional similarity ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2003.11.016

    authors: Olivier M,Wang X,Cole R,Gau B,Kim J,Rubin EM,Pennacchio LA

    更新日期:2004-05-01 00:00:00

  • Human-mouse homologies in the region of the polycystic kidney disease gene (PKD1).

    abstract::Autosomal dominant polycystic kidney disease (PKD1) is linked to the alpha-globin locus near the telomere of chromosome 16p. We established the existence of a conserved linkage group in mouse by mapping conserved sequences and cDNAs from the region surrounding the PKD1 gene in the mouse genome. Results obtained with t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(92)90198-2

    authors: Himmelbauer H,Pohlschmidt M,Snarey A,Germino GG,Weinstat-Saslow D,Somlo S,Reeders ST,Frischauf AM

    更新日期:1992-05-01 00:00:00

  • Pathogenic 12-kb copy-neutral inversion in syndromic intellectual disability identified by high-fidelity long-read sequencing.

    abstract::We report monozygotic twin girls with syndromic intellectual disability who underwent exome sequencing but with negative pathogenic variants. To search for variants that are unrecognized by exome sequencing, high-fidelity long-read genome sequencing (HiFi LR-GS) was applied. A 12-kb copy-neutral inversion was precisel...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.10.038

    authors: Mizuguchi T,Okamoto N,Yanagihara K,Miyatake S,Uchiyama Y,Tsuchida N,Hamanaka K,Fujita A,Miyake N,Matsumoto N

    更新日期:2020-11-04 00:00:00

  • A novel ribosomal S6-kinase (RSK4; RPS6KA6) is commonly deleted in patients with complex X-linked mental retardation.

    abstract::Large deletions in Xq21 often are associated with contiguous gene syndromes consisting of X-linked deafness type 3 (DFN3), mental retardation (MRX), and choroideremia (CHM). The identification of deletions associated with classic CHM or DFN3 facilitated the positional cloning of the underlying genes, REP-1 and POU3F4,...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.6004

    authors: Yntema HG,van den Helm B,Kissing J,van Duijnhoven G,Poppelaars F,Chelly J,Moraine C,Fryns JP,Hamel BC,Heilbronner H,Pander HJ,Brunner HG,Ropers HH,Cremers FP,van Bokhoven H

    更新日期:1999-12-15 00:00:00

  • Molecular genetic mapping of the mouse male sterility and histoincompatibility (mshi) mutation on proximal chromosome 10.

    abstract::The recessive male sterility and histoincompatibility (mshi) mutation in the mouse generates pleiotropic effects on histocompatibility and male reproduction, while female mutants appear to be reproductively normal. We have mapped the mshi mutation to mouse Chromosome (Chr) 10 by analysis of 126 progeny from an intrasp...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.4475

    authors: Turner JP,Carpentino JE,Cantwell AM,Hildebrandt AL,Myrie KA,King TR

    更新日期:1997-01-01 00:00:00

  • Detection of three rare frameshift mutations in the cystic fibrosis gene in an African-American (CF444delA), an Italian (CF2522insC), and a Soviet (CF3821delT).

    abstract::We have identified three new frameshift mutations in the CFTR gene in patients with cystic fibrosis (CF). The first one involves the deletion of an adenine nucleotide in exon 4 in an African-American patient (CF444delA), the second involves the insertion of a cytosine nucleotide in exon 13 in an Italian patient (CF252...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90510-l

    authors: White MB,Krueger LJ,Holsclaw DS Jr,Gerrard BC,Stewart C,Quittell L,Dolganov G,Baranov V,Ivaschenko T,Kapronov NI

    更新日期:1991-05-01 00:00:00

  • Confirmation of linkage of Friedreich ataxia to chromosome 9 and identification of a new closely linked marker.

    abstract::A linkage analysis with chromosome 9 markers was performed in 33 families with Friedreich ataxia (FA). Linkage with D9S15, previously established by S. Chamberlain et al. (1988, Nature London 334:248-249) was confirmed in our sample (z(theta) = 6.82 at theta = 0.02) while INFB (interferon-beta gene) shows looser linka...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(89)90323-6

    authors: Fujita R,Agid Y,Trouillas P,Seck A,Tommasi-Davenas C,Driesel AJ,Olek K,Grzeschik KH,Nakamura Y,Mandel JL,Hanauer A

    更新日期:1989-01-01 00:00:00

  • Construction and characterization of a bovine bacterial artificial chromosome library.

    abstract::A bacterial artificial chromosome (BAC) library has been constructed for use in bovine genome mapping using constructed for use in bovine genome mapping using the pBeloBAC11 vector. Currently, the library consists of 23,040 clones, which achieves a 70% probability (P=0.70) of the library containing a specific unique D...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.9986

    authors: Cai L,Taylor JF,Wing RA,Gallagher DS,Woo SS,Davis SK

    更新日期:1995-09-20 00:00:00

  • Pseudomonas putida modulates the expression of miRNAs and their target genes in response to drought and salt stresses in chickpea (Cicer arietinum L.).

    abstract::MicroRNAs are small non-coding regulatory RNA molecules that play an important role in the modulation of gene expression during various environmental stresses. Pseudomonas putida RA, a plant growth promoting rhizobacteria (PGPR) colonizes the root surface of plants improving their growth and development during abiotic...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2018.01.007

    authors: Jatan R,Chauhan PS,Lata C

    更新日期:2019-07-01 00:00:00

  • Nonhomologous recombination between the cytochrome b558 heavy chain gene (CYBB) and LINE-1 causes an X-linked chronic granulomatous disease.

    abstract::We cloned and characterized a genomic DNA fragment including the deletion junction of a chronic granulomatous disease patient with a 25-kb deletion extending to the 5' two-thirds of CYBB. The 3' breakpoint of the deletion exists in exon 7 of CYBB. A LINE-1 element lies at 5 kb upstream of CYBB in normal persons, and t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5510

    authors: Kumatori A,Faizunnessa NN,Suzuki S,Moriuchi T,Kurozumi H,Nakamura M

    更新日期:1998-10-15 00:00:00

  • The human homologue of the Drosophila tailless gene (TLX): characterization and mapping to a region of common deletion in human lymphoid leukemia on chromosome 6q21.

    abstract::Deletion of the long arm of chromosome 6 (6q) is one of the most common chromosomal abnormalities in human hematological malignancies. Two distinct regions of minimal deletion have been identified by loss of heterozygosity studies at 6q25 to 6q27 (RMD-1) and at 6q21 to 6q23 (RMD-2), suggesting the presence of one or m...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5270

    authors: Jackson A,Panayiotidis P,Foroni L

    更新日期:1998-05-15 00:00:00

  • Construction of a gene map of the nephronophthisis type 1 (NPHP1) region on human chromosome 2q12-q13.

    abstract::A gene for the autosomal recessive kidney disorder juvenile nephronophthisis (NPH) is located on chromosome 2q between markers D2S1893 and D2S1888. Recently, the presence of large homozygous deletions was described in the majority of NPH patients. We constructed an integrated YAC/PAC contig of 54 markers and 30 PAC cl...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.5102

    authors: Nothwang HG,Stubanus M,Adolphs J,Hanusch H,Vossmerbäumer U,Denich D,Kübler M,Mincheva A,Lichter P,Hildebrandt F

    更新日期:1998-01-15 00:00:00

  • Genetic dissection of "OLETF," a rat model for non-insulin-dependent diabetes mellitus: quantitative trait locus analysis of (OLETF x BN) x OLETF.

    abstract::To identify genetic determinants relevant to non-insulin-dependent diabetes mellitus (NIDDM), we performed a genome-wide analysis for quantitative trait loci (QTLs) using 359 backcross progeny of the Otsuka Long-Evans Tokushima Fatty (OLETF) rat. The OLETF strain is a well-studied animal model of obese NIDDM, with fea...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.5789

    authors: Watanabe TK,Okuno S,Oga K,Mizoguchi-Miyakita A,Tsuji A,Yamasaki Y,Hishigaki H,Kanemoto N,Takagi T,Takahashi E,Irie Y,Nakamura Y,Tanigami A

    更新日期:1999-06-15 00:00:00

  • Localization of the properdin structural locus to Xp11.23-Xp21.1.

    abstract::Properdin is a serum protein belonging to the alternative pathway of complement activation whose absence is often associated with fatal bacterial infections. Properdin deficiency segregates with an X-linked recessive pattern and its position has been recently refined by genetic linkage analysis to the proximal part of...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(89)90085-2

    authors: Goundis D,Holt SM,Boyd Y,Reid KB

    更新日期:1989-07-01 00:00:00

  • Genome-wide analysis of AP2/ERF transcription factors in pineapple reveals functional divergence during flowering induction mediated by ethylene and floral organ development.

    abstract::The APETALA2/ethylene-responsive factor (AP2/ERF) has important roles in regulating developmental processes and hormone signaling transduction in plants. Pineapple demonstrates a special sensitivity to ethylene, and AP2/ERFs may contribute to this distinct sensitivity of pineapples to ethylene. However, little informa...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.10.040

    authors: Zhang H,Pan X,Liu S,Lin W,Li Y,Zhang X

    更新日期:2021-01-20 00:00:00

  • Physical mapping by PFGE localizes the COL3A1 and COL5A2 genes to a 35-kb region on human chromosome 2.

    abstract::The genes encoding the alpha 1 chain of Type III collagen (COL3A1) and the alpha 2 chain of Type V (COL5A2) collagen have been mapped to the long arm of human chromosome 2. Linkage analysis in CEPH families indicated that these two genes are close to each other, with no recombination in 37 informative meioses. In the ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(90)90302-b

    authors: Cutting GR,McGinniss MJ,Kasch LM,Tsipouras P,Antonarakis SE

    更新日期:1990-10-01 00:00:00