The rutin catabolic pathway with special emphasis on quercetinase.

Abstract:

:The aim of this review is to give a general account on the oxidative microbial degradation of flavonols. Since now 50 years, various research groups have deciphered the way microorganisms aerobically deal with this important class of flavonoids. Flavonols such as rutin and quercetin are abundantly found in vegetal tissues and exudates, and it was thus patent that various microorganisms will bear the enzymatic machinery necessary to cope with these vegetal secondary metabolites. After initial studies focussed on the general metabolic capacity of various microorganisms towards flavonols, the so called rutin catabolic pathway was rapidly established in moulds. Enzymes of the path as well as substrates and products were known at the beginning of the seventies. Then during 30 years, only sporadic studies were focused on this pathway, before a new burst of interest at the beginning of the new century arose with structural, genomic and theoretical studies mainly conducted towards quercetinase. This is the goal of this work to relate this 50 years journey at the crossroads of microbiology, biochemistry, genetic and chemistry. Some mention of the potential usefulness of the enzymes of the path as well as micro-organisms bearing the whole rutin catabolic pathway is also discussed.

journal_name

Biodegradation

journal_title

Biodegradation

authors

Tranchimand S,Brouant P,Iacazio G

doi

10.1007/s10532-010-9359-7

subject

Has Abstract

pub_date

2010-11-01 00:00:00

pages

833-59

issue

6

eissn

0923-9820

issn

1572-9729

journal_volume

21

pub_type

杂志文章,评审
  • Biostimulation of anaerobic BTEX biodegradation under fermentative methanogenic conditions at source-zone groundwater contaminated with a biodiesel blend (B20).

    abstract::Field experiments were conducted to assess the potential for anaerobic biostimulation to enhance BTEX biodegradation under fermentative methanogenic conditions in groundwater impacted by a biodiesel blend (B20, consisting of 20 % v/v biodiesel and 80 % v/v diesel). B20 (100 L) was released at each of two plots through...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-012-9589-y

    authors: Ramos DT,da Silva ML,Chiaranda HS,Alvarez PJ,Corseuil HX

    更新日期:2013-06-01 00:00:00

  • Expanded thermodynamic true yield prediction model: adjustments and limitations.

    abstract::Bacterial yield prediction is critical for bioprocess optimization and modeling of natural biological systems. In previous work, an expanded thermodynamic true yield prediction model was developed through incorporating carbon balance and nitrogen balance along with electron balance and energy balance. In the present w...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-007-9119-5

    authors: Xiao J,VanBriesen JM

    更新日期:2008-02-01 00:00:00

  • L-Tryptophan catabolism by Rubrivivax benzoatilyticus JA2 occurs through indole 3-pyruvic acid pathway.

    abstract::Rubrivivax benzoatilyticus JA2 utilizes L: -tryptophan as the sole source of nitrogen for growth, and it has a doubling time of approximately 11 h (compared to 8 h with ammonium chloride). With cell free extracts in the presence of 2-oxoglutarate, indole-3-pyruvic acid, indole-3-acetaldehyde, indole-3-acetic acid, isa...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-010-9347-y

    authors: Kumavath RN,Ramana ChV,Sasikala Ch

    更新日期:2010-09-01 00:00:00

  • Cometabolic biotransformation of fenpropathrin by Clostridium species strain ZP3.

    abstract::A novel bacterial strain capable of degrading the pyrethroid pesticide fenpropathrin was isolated from mixed wastewater and sludge samples. Phylogenetic analysis of the 16S rDNA sequence revealed that the organism belongs to the genus Clostridium. The organism can co-metabolically transform fenpropathrin at 100 mg l(-...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-010-9444-y

    authors: Zhang S,Yin L,Liu Y,Zhang D,Luo X,Cheng J,Cheng F,Dai J

    更新日期:2011-09-01 00:00:00

  • Kinetics of aerobic cometabolism of chlorinated solvents.

    abstract::The objectives of this paper are to review the wide range of kinetic models that have been introduced to describe the cometabolic oxidation of chlorinated solvents, to compare modeling approaches and associated experimental data, and to discuss knowledge gaps in the general topic of cometabolism kinetics. To begin, a ...

    journal_title:Biodegradation

    pub_type: 杂志文章,评审

    doi:10.1023/a:1012075322466

    authors: Alvarez-Cohen L,Speitel GE Jr

    更新日期:2001-01-01 00:00:00

  • Biogas properties and enzymatic analysis during anaerobic fermentation of Phragmites australis straw and cow dung: influence of nickel chloride supplement.

    abstract::The importance of nickel (added as NiCl2) on mesophilic anaerobic fermentation of Phragmites australis straw and cow dung was demonstrated by investigating the biogas properties, pH values, organic matter degradation [chemical oxygen demand (COD)] and enzyme activities (cellulase, protease and dehydrogenase) during th...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-016-9774-5

    authors: Tian Y,Zhang H,Chai Y,Wang L,Mi X,Zhang L,Ware MA

    更新日期:2017-02-01 00:00:00

  • In vitro comparative analysis of monocrotophos degrading potential of Aspergillus flavus, Fusarium pallidoroseum and Macrophomina sp.

    abstract::Fungal degradation is emerging as a new powerful tool for the removal of potent neurotoxin pesticide, monocrotophos. Therefore, the present study is aimed at comparative characterization of monocrotophos degrading ability of three different fungal strains. Fungal strains were isolated from local agricultural soil by e...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-013-9672-z

    authors: Jain R,Garg V,Yadav D

    更新日期:2014-06-01 00:00:00

  • The overproduction of 2,4-DTBP accompanying to the lack of available form of phosphorus during the biodegradative utilization of aminophosphonates by Aspergillus terreus.

    abstract::Although information about the ability of some filamentous fungi to biodegrade organophosphonates is available, the knowledge about accompanying changes in fungal metabolism is very limited. The aim of our study was to determine the utilization of the chosen, structurally diverse aminophosphonates by Aspergillus terre...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-014-9716-z

    authors: Lenartowicz P,Kafarski P,Lipok J

    更新日期:2015-02-01 00:00:00

  • 2,4,6-trichlorophenol (TCP) photobiodegradation and its effect on community structure.

    abstract::The mechanisms occurring in a photolytic circulating-bed biofilm reactor (PCBBR) treating 2,4,6-trichlorophenol (TCP) were investigated using batch experiments following three protocols: photodegradation alone (P), biodegradation alone (B), and intimately coupled photodegradation and biodegradation (P&B). Initially, t...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-012-9534-0

    authors: Zhang Y,Pu X,Fang M,Zhu J,Chen L,Rittmann BE

    更新日期:2012-07-01 00:00:00

  • The anaerobic biodegradation of diethanolamine by a nitrate reducing bacterium.

    abstract::The ability of bacterial cultures to degrade diethanolamine under anoxic conditions with nitrate as an electron acceptor was investigated. A mixed culture capable of anaerobic degradation of diethanolamine was obtained from river sediments by enrichment culture. From this a single bacterial strain was isolated which c...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/BF00058178

    authors: Knapp JS,Jenkey ND,Townsley CC

    更新日期:1996-06-01 00:00:00

  • Kinetics of biodegradation of diethylketone by Arthrobacter viscosus.

    abstract::The performance of an Arthrobacter viscosus culture to remove diethylketone from aqueous solutions was evaluated. The effect of initial concentration of diethylketone on the growth of the bacteria was evaluated for the range of concentration between 0 and 4.8 g/l, aiming to evaluate a possible toxicological effect. Th...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-011-9488-7

    authors: Costa F,Quintelas C,Tavares T

    更新日期:2012-02-01 00:00:00

  • Feasibility study of degradation of phenol in a fluidized bed bioreactor with a cyclodextrin polymer as biofilm carrier.

    abstract::This work is focused on the evaluation of a beta-cyclodextrin polymer as a carrier medium in a fluidized bed bioreactor treating aqueous phenol as a model pollutant. The insoluble polymer support was obtained in the shape of spherical beads by crosslinking beta-cyclodextrin with epichlorohydrin. A batch of swollen pol...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-007-9164-0

    authors: Sevillano X,Isasi JR,Peñas FJ

    更新日期:2008-07-01 00:00:00

  • Biodegradation of diesel fuel by a microbial consortium in the presence of 1-alkoxymethyl-2-methyl-5-hydroxypyridinium chloride homologues.

    abstract::Fast development of ionic liquids as gaining more and more attention valuable chemicals will undoubtedly lead to environmental pollution. New formulations and application of ionic liquids may result in contamination in the presence of hydrophobic compounds, such as petroleum mixtures. We hypothesize that in the presen...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-009-9253-3

    authors: Chrzanowski L,Stasiewicz M,Owsianiak M,Szulc A,Piotrowska-Cyplik A,Olejnik-Schmidt AK,Wyrwas B

    更新日期:2009-09-01 00:00:00

  • Bacterial degradation of 3-chloroacrylic acid and the characterization of cis- and trans-specific dehalogenases.

    abstract::A coryneform bacterium that is able to utilize cis- and trans-3-chloroacrylic acid as sole carbon source for growth was isolated from freshwater sediment. The organism was found to produce two inducible dehalogenases, one specific for the cis- and the other for trans-3-chloroacrylic acid. Both dehalogenases were purif...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/BF00124488

    authors: van Hylckama Vlieg JE,Janssen DB

    更新日期:1991-01-01 00:00:00

  • Development of a PCR method for the detection and quantification of benzoyl-CoA reductase genes and its application to monitored natural attenuation.

    abstract::Benzoyl coenzyme A reductase (BCR) catalyzes dearomatization of benzoyl coenzyme A (benzoyl-CoA), which is the central step in the anaerobic degradative pathways for a variety of aromatic compounds. This study developed a PCR method for the detection and quantification of BCR genes in bacterial strains and environment...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-005-0826-5

    authors: Hosoda A,Kasai Y,Hamamura N,Takahata Y,Watanabe K

    更新日期:2005-12-01 00:00:00

  • Microbial energetics and stoichiometry for biodegradation of aromatic compounds involving oxygenation reactions.

    abstract::Oxygenation reactions significantly alter the energy and electron flows and, consequently, the overall stoichiometry for the microbial utilization of aromatic compounds. Oxygenation reactions do not yield a net release of electrons, but require an input of electrons to reduce oxygen molecules. The biodegradation pathw...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1023/a:1011162830401

    authors: Woo SH,Rittmann BE

    更新日期:2000-01-01 00:00:00

  • Effect of fluctuations in salinity on anaerobic biomass and production of soluble microbial products (SMP(s)).

    abstract::This study investigated the acclimation potential of batch fed anaerobic biomass with salinities of 0-50 gNaCl l(-1). Anaerobic biomass was acclimatized to salinities up to 20 gNaCl l(-1)over a period of 35 days, with 3 consecutive feedings. After this period the biomass was subjected to non-saline conditions to simul...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-008-9210-6

    authors: Vyrides I,Stuckey DC

    更新日期:2009-04-01 00:00:00

  • Color measurements as a reliable method for estimating chlorophyll degradation to phaeopigments.

    abstract::The application of biocides is a traditional method of controlling biodecay of outdoor cultural heritage. Chlorophyll degradation to phaeopigments is used to test the biocidal efficacy of the antimicrobial agents. In the present study, the usefulness of color measurements in estimating chlorophyll degradation was inve...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-010-9402-8

    authors: Sanmartín P,Villa F,Silva B,Cappitelli F,Prieto B

    更新日期:2011-07-01 00:00:00

  • Biodegradation of the major color containing compounds in distillery wastewater by an aerobic bacterial culture and characterization of their metabolites.

    abstract::This study deals the biodegradation of the major color containing compounds extracted from distillery wastewater (DWW) by an aerobic bacterial consortium comprising Bacillus licheniformis (DQ79010), Bacillus sp. (DQ779011) and Alcaligenes sp. (DQ779012) and characterization of metabolic products. The degradation of co...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-010-9336-1

    authors: Bharagava RN,Chandra R

    更新日期:2010-09-01 00:00:00

  • Evaluation of 4-bromophenol biodegradation in mixed pollutants system by Arthrobacter chlorophenolicus A6 in an upflow packed bed reactor.

    abstract::Bromophenol is listed as priority pollutant by U.S. EPA, however, there is no report so far on its removal in mixed pollutants system by any biological reactor operated in continuous mode. Furthermore, bromophenol along with chlorophenol and nitrophenol are usually the major constituents of paper pulp and pesticide in...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-014-9693-2

    authors: Sahoo NK,Pakshirajan K,Ghosh PK

    更新日期:2014-09-01 00:00:00

  • Biodegradation of hexazinone by two isolated bacterial strains (WFX-1 and WFX-2).

    abstract::Two hexazinone-degrading bacterial strains were isolated from soil by enrichment culture technique, and identified as Pseudomonas sp. and Enterobacter cloacap, respectively. The two purified isolates, designated as WFX-1 and WFX-2, could rapidly degrade hexazinone with half-lives of 3.08 and 2.95 days in mineral salts...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-005-9002-1

    authors: Wang X,Zhou S,Wang H,Yang S

    更新日期:2006-08-01 00:00:00

  • Cupriavidus necator JMP134 rapidly reduces furfural with a Zn-dependent alcohol dehydrogenase.

    abstract::Ethanol is a renewable biofuel, and it can be produced from lignocellulosic biomass. The biomass is usually converted to hydrolysates that consist of sugar and sugar derivatives, such as furfural. Yeast ferments sugar to ethanol, but furfural higher than 3 mM is inhibitory. It can take several days for yeast cells to ...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-011-9476-y

    authors: Li Q,Metthew Lam LK,Xun L

    更新日期:2011-11-01 00:00:00

  • On the biosorption, by brown seaweed, Lobophora variegata, of Ni(II) from aqueous solutions: equilibrium and thermodynamic studies.

    abstract::The biosorption equilibrium isotherms of Ni(II) onto marine brown algae Lobophora variegata, which was chemically-modified by CaCl(2) were studied and modeled. To predict the biosorption isotherms and to determine the characteristic parameters for process design, twenty-three one-, two-, three-, four- and five-paramet...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-010-9333-4

    authors: Basha S,Jaiswar S,Jha B

    更新日期:2010-09-01 00:00:00

  • Biotransformation kinetics of Pseudomonas putida for cometabolism of phenol and 4-chlorophenol in the presence of sodium glutamate.

    abstract::A kinetic model to describe the degradation of phenol and cometabolic transformation of 4-chlorophenol (4-cp) in the presence of sodium glutamate (SG) has been developed and validated experimentally. The integrated model accounts for cell growth, toxicity of 4-cp, cross-inhibitions among the three substrates, and the ...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1023/a:1013170322269

    authors: Wang SJ,Loh KC

    更新日期:2001-01-01 00:00:00

  • Molecular genetics of methane oxidation.

    abstract::Biological methane oxidation is carried out by methanotrophs, bacteria that utilize methane as their sole carbon and energy source. The enzyme they contain that is responsible for methane oxidation is methane monooxygenase, the most well studied being the soluble methane monooxygenase enzyme complexes from Methylococc...

    journal_title:Biodegradation

    pub_type: 杂志文章,评审

    doi:10.1007/BF00696456

    authors: Murrell JC

    更新日期:1994-12-01 00:00:00

  • Conversion and degradation of shellfish wastes by Serratia sp. TKU016 fermentation for the production of enzymes and bioactive materials.

    abstract::A chitosanase and a protease were purified from the culture supernatant of Serratia sp. TKU016 with shrimp shell as the sole carbon/nitrogen source. The molecular masses of the chitosanase and protease determined by SDS-PAGE were approximately 65 and 53 kDa, respectively. The chitosanase was inhibited completely by Mn...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-009-9303-x

    authors: Wang SL,Chang TJ,Liang TW

    更新日期:2010-06-01 00:00:00

  • Characterization of polychlorinated alkane mixtures--a Monte Carlo modeling approach.

    abstract::A Monte Carlo model was developed to characterize the molecular composition of polychlorinated alkane mixtures. The model is based upon a simulation of the free-radical chlorination process by which polychlorinated alkane mixtures are produced industrially from n-alkanes. In the model, the free-radical chlorination re...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-007-9099-5

    authors: Jensen SR,Brown WA,Heath E,Cooper DG

    更新日期:2007-12-01 00:00:00

  • Adhesion to the hydrocarbon phase increases phenanthrene degradation by Pseudomonas fluorescens LP6a.

    abstract::Microbial adhesion is an important factor that can influence biodegradation of poorly water soluble hydrocarbons such as phenanthrene. This study examined how adhesion to an oil-water interface, as mediated by 1-dodecanol, enhanced phenanthrene biodegradation by Pseudomonas fluorescens LP6a. Phenanthrene was dissolved...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-010-9421-5

    authors: Abbasnezhad H,Foght JM,Gray MR

    更新日期:2011-06-01 00:00:00

  • Abatement of volatile organic sulfur compounds in odorous emissions from the bio-industry.

    abstract::Compounds of interest in this work are methanethiol (MeSH), dimethyl sulfide (Me2S), dimethyl polysulfides (Me2Sx) and carbon disulfide (CS2) since these volatiles have been identified as predominant odorants in the emission of a wide range of activities in the bio-industry (e.g. aerobic waste water treatment plants, ...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1023/a:1008281609966

    authors: Smet E,Van Langenhove H

    更新日期:1998-01-01 00:00:00

  • Identification and characterization of hydroxyquinone hydratase activities from Sphingobium chlorophenolicum ATCC 39723.

    abstract::Hydroxyquinol, a common metabolite of aromatic compounds, is readily auto-oxidized to hydroxyquinone. Enzymatic activities that metabolized hydroxyquinone were observed from the cell extracts of Sphingobium chlorophenolicum ATCC 39723. An enzyme capable of transforming hydroxyquinone was partially purified, and its ac...

    journal_title:Biodegradation

    pub_type: 杂志文章

    doi:10.1007/s10532-004-2058-5

    authors: Bohuslavek J,Chanama S,Crawford RL,Xun L

    更新日期:2005-08-01 00:00:00