Abstract:
:India is endemic for foot-and-mouth disease (FMD) and in recent years a unique group within serotype A, carrying a codon deletion at an antigenically critical site in capsid protein VP3 has emerged (VP3(59)-deletion group). This tempted us to analyze the noncoding region, which is an under represented area, though critically associated with virus biology and pathogenesis. Analysis of the large fragment of 5' untranslated region (LF-5' UTR) of type A FMD virus revealed discrepancy in the overall tree topology between LF-5' UTR and 1D region possibly due to independent evolution of coding and noncoding regions. The VP3(59)-deletion group maintained its phylogenetic distinctness even at the LF-5' UTR. Eighteen lineage specific signatures detected here support independent evolutionary paths for the lineages. Extensive deletions of 45 and 89 nucleotides corresponding to the pseudoknot region were noticed. Conservation pattern in the 'A(253)AACA' motif in the cre/bus stem-loop indicates the importance of first three 'A' residues in VPg uridylylation. Of the three polypyrimidine tract binding protein (PTB) binding sites mapped on the internal ribosome entry site (IRES), the pyrimidine tract (Py tract) in the loop of domain 2 was found to be maximally conserved and it might be the major PTB binding site. Strikingly, a deletion group lineage specific transversion was noticed in the Py tract at the 3' end of IRES without significantly affecting its in vitro infectious titer. Hence, we presume that for efficient cap-independent viral translation, either a minimum number of pyrimidine residues rather than a complete Py tract or a Py tract tolerating transversions only at specific locations and a core motif 'CUUU' within the Py tract is essential.
journal_name
Virus Genesjournal_title
Virus genesauthors
Mohapatra JK,Sahu A,Barik SK,Sanyal A,Pattnaik Bdoi
10.1007/s11262-009-0366-xsubject
Has Abstractpub_date
2009-08-01 00:00:00pages
81-9issue
1eissn
0920-8569issn
1572-994Xjournal_volume
39pub_type
杂志文章相关文献
VIRUS GENES文献大全abstract::Sacbrood virus (SBV) represents a serious threat to the health of managed honeybees. We determined four complete SBV genomic sequences (AmSBV-Kor1, AmSBV-Kor2, AcSBV-Kor3, and AcSBV-Kor4) isolated from Apis mellifera and Apis cerana in various regions of South Korea. A phylogenetic tree was constructed from the comple...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-015-1268-8
更新日期:2016-04-01 00:00:00
abstract::Gallid herpesvirus-1 (GaHV-1), commonly named infectious laryngotracheitis (ILT) virus, causes the respiratory disease in chickens known as ILT. The molecular determinants associated with differences in pathogenicity of GaHV-1 strains are not completely understood, and a comparison of genomic sequences of isolates tha...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-011-0696-3
更新日期:2012-04-01 00:00:00
abstract::Canine distemper (CD) is a highly contagious, often fatal, multisystemic, and incurable disease in dogs and other carnivores, which is caused by canine distemper virus (CDV). Although vaccines have been used as the principal means of controlling the disease, CD has been reported in vaccinated animals. The hemoagglutin...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-014-1062-z
更新日期:2014-08-01 00:00:00
abstract::The complete nucleotide sequence of mumps virus isolated in Korea, Dg1062/Korea/98 (Dg1062), was determined. As other mumps viruses, its genome was to be 15,384 nucleotides (nts) in length and encoded seven proteins. The both 5' and 3' ends were confirmed to be 55 and 24 nts by RACE method, respectively. The full-leng...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1023/B:VIRU.0000016859.04203.88
更新日期:2004-03-01 00:00:00
abstract::Adeno-associated virus (AAV) is a human parvovirus that in laboratory and animal models has the ability to suppress the oncogenic phenotype of a variety of viruses and cellular derived oncogenes. The inhibitory effects of AAV have been mapped to its rap gene (Rep78 protein). Furthermore, seroepidemiologic data indicat...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/BF00370000
更新日期:1996-01-01 00:00:00
abstract::Cauliflower mosaic virus (CaMV) gene I encodes a protein (P1) that has been implicated in the control of virus movement in infected plants. To assist in the characterization of the mechanism of action of P1, gene I has been expressed efficiently in Spodoptera frugiperda (Sf) cells using recombinant baculovirus. Contro...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/BF01703753
更新日期:1992-01-01 00:00:00
abstract::Currently, virus-based vectors, namely derivatives of the adenovirus, are frequently used in a wide variety of ex vivo or local gene therapeutic applications. However, the efficacy of virus-based vectors in systemic applications is presently still extremely limited. Complex interactions of the various vector types wit...
journal_title:Virus genes
pub_type: 杂志文章,评审
doi:10.1007/s11262-017-1498-z
更新日期:2017-10-01 00:00:00
abstract::Protein 2A is a non-structural protein of coxsackievirus B3 (CVB3), an important human pathogen that can cause a variety of human diseases. Protein 2A not only participates in viral life cycle, but also regulates host cell functions; however, the underlying mechanisms remain poorly understood. In order to better under...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-015-1270-1
更新日期:2016-04-01 00:00:00
abstract::Although Sapovirus (Caliciviridae) has been accepted as one of the causes of acute gastroenteritis worldwide, little is known about the genetic characteristics of the whole genome of sapoviruses in China, especially those that infect humans. Here we report the complete genome sequence of a sapovirus strain, Human/Zhej...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-016-1343-9
更新日期:2016-10-01 00:00:00
abstract::The foot-and-mouth disease virus (FMDV) nonstructural protein 3A plays an important role in viral replication, virulence, and host range. It has been shown that deletions of 10 or 19-20 amino acids in the C-terminal half of 3A attenuate serotype O and C FMDVs, which replicate poorly in bovine cells but normally in por...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-017-1480-9
更新日期:2017-12-01 00:00:00
abstract::Bornaviruses (family Bornaviridae) are non-segmented negative-strand RNA viruses. Avian bornaviruses (ABVs), which are causative agents of proventricular dilatation disease, are a genetically diverse group with at least 15 genotypes, including parrot bornaviruses (PaBVs) and aquatic bird bornavirus 1(ABBV-1). Borna di...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-015-1240-7
更新日期:2015-10-01 00:00:00
abstract::Yellow oat-grass plants (Trisetum flavescens L.) with mild mosaic and pronounced dwarfing symptoms were observed at different locations in the Czech Republic. Electron microscope observations of symptomatic plants revealed the presence of filamentous particles and inclusion bodies characteristic of the family Potyviri...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-009-0373-y
更新日期:2009-08-01 00:00:00
abstract::Pandemic H1N1 2009 (pH1N1), influenza virus containing triple reassortant internal genes (TRIG) from avian, human, and swine influenza viruses emerged in 2009 as a highly infectious virus that was able to be transmitted from humans to pigs. During June 2010-May 2012, influenza virus surveillance was conducted in Thai ...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-013-0927-x
更新日期:2013-08-01 00:00:00
abstract::Porcine astrovirus (PAstV) belongs to genetically divergent lineages within the genus Mamastrovirus. In this study, 25/129 (19.4 %) domestic pig and 1/146 (0.7 %) wild boar fecal samples tested in South Korea were positive for PAstV. Positive samples were mainly from pigs under 6 weeks old. Bayesian inference (BI) tre...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-012-0816-8
更新日期:2013-02-01 00:00:00
abstract::The 5' non-coding region (5'-NCR) of 27 classical swine fever virus (CSFV) isolates from Lao People's Democratic Republic (Lao PDR) during 1997 and 1999 were amplified by RT-PCR. A 150-bp region of the 5'-NCR amplicons was analysed and compared with reference CSFV of European and Asian origin and a phylogenetic dendro...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-005-3253-0
更新日期:2005-12-01 00:00:00
abstract::Several important biological processes are performed by distinct functional domains found on replication-associated protein (Rep) encoded by AC1 of geminiviruses. Two truncated forms of replicase (tAC1) gene, capable of expressing only the N-terminal 669 bp (5'AC1) and C-terminal 783 bp (3'AC1) nucleotides cloned unde...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-011-0569-9
更新日期:2011-04-01 00:00:00
abstract::The UL24 gene of herpes simplex virus type 2 (HSV-2) is predicted to encode a 281 amino acid protein with a molecular mass of 30.5 kDa. In this study, the HSV-2 UL24 gene product has been identified by using a rabbit polyclonal antiserum produced against a recombinant protein containing the full-length UL24 gene produ...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1023/a:1011118424474
更新日期:2001-06-01 00:00:00
abstract::Viroids, the smallest and simplest agents of infectious disease, cause a number of economically important diseases of crop plants. Present evidence indicates that most of these diseases originated recently (in the 20th century) by chance transfer of viroids from endemically infected wild plants or by use of viroid-inf...
journal_title:Virus genes
pub_type: 杂志文章,评审
doi:10.1007/BF01728653
更新日期:1995-01-01 00:00:00
abstract::The complete nucleotide sequence of a virus isolated from soybean (Glycine max (L.) Merr.) in China, previously identified as a new strain of Tobacco necrosis virus A (TNV-A) based on its biological, serological properties, and coat protein (CP) sequence and named as TNV-A C, was determined and compared with that of T...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-007-0185-x
更新日期:2008-02-01 00:00:00
abstract::Two virus strains, tentatively designated as ON-6/P/05 and ON-7/E/05, were isolated from blood samples of healthy cattle in the Yaeyama Islands, located in the southwestern-most region of Japan, in 2005. Ultrastructural observations of infected baby hamster (BHK-21) cells revealed that the viruses had features consist...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-018-1592-x
更新日期:2018-10-01 00:00:00
abstract::Endogenous retrovirus-like sequences that are homologous to the multigenic murine and Syrian hamster intracisternal type A particle (IAP) genes can be detected in very few copies in the Chinese hamster (CH) genome. They were cloned from a CHO gene library and two recombinants, harboring the major IAP-like DNA genes ch...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/BF00570029
更新日期:1990-12-01 00:00:00
abstract::Emerging pseudorabies virus (PRV) variant has led to frequent outbreaks of PRV infection among Bartha-K61-vaccinated swine population in Chinese swine farms and caused high mortality in pigs of all age since late 2011. Here, we generated a gE/gI-deleted PRV (rPRVXJ-delgI/gE-EGFP) based on PRV variant strain (PRV-XJ) t...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-017-1454-y
更新日期:2017-08-01 00:00:00
abstract::Mal de Río Cuarto virus (MRCV) is a newly described species of the genus Fijivirus, family Reoviridae. Compared with other plant-infecting genus of the family, the function and localization of MRCV and other Fijivirus proteins are poorly understood. Through analysis of viral particle purifications, we positively ident...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-009-0345-2
更新日期:2009-06-01 00:00:00
abstract::Brazil is one of the largest silk producers in the world. The domesticated silkworm (Bombyx mori) was formally introduced into the country in the twentieth century, and the state of Paraná is the main national producer. During larval stages, B. mori can be afflicted by many different infectious diseases, which lead to...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-014-1112-6
更新日期:2014-12-01 00:00:00
abstract::Torque teno viruses (TTVs) are classified into the Anellovirus genus of the Circoviridae family. In addition to TTV isolates, TTV genogroup 3 also includes the 8 virus strains known as SENV-A to H. In this study, the prevalence of TTV group 3 viruses and that of SENV-D and H in particular were determined among the sta...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-009-0369-7
更新日期:2009-08-01 00:00:00
abstract::Betasatellites are single-stranded circular DNAs associated with a number of monopartite begomoviruses. Betasatellites rely on the helper begomoviruses for replication and movement in plant tissues and plant-to-plant transmission by vectors. Their genomes are approximately half the size of the helper viruses and consi...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-016-1354-6
更新日期:2016-10-01 00:00:00
abstract::All known sequences of the DNA encoding the major cervical cancer-causing human papillomavirus type 16 (HPV16) L1 capsid protein contain initiation codons which would allow translation to begin at either nucleotide 5559 or 5637. However the formation of virus-like particles (VLPs) only occurs efficiently when the init...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-004-4579-8
更新日期:2005-01-01 00:00:00
abstract::Sugarcane bacilliform virus (SCBV), which causes leaf freckle in sugarcane, is a member of the genus Badnavirus. Studies were conducted to characterize SCBV in Saccharum officinarum germplasm and cultivated varieties in India by sequencing the complete genomes of five isolates. Genome lengths ranged from 7,553 to 7,88...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-013-0890-6
更新日期:2013-06-01 00:00:00
abstract::The presence of Cucumber mosaic virus (CMV) satellite RNA dramatically changes symptoms on some hosts. A satellite RNA present in a strain of CMV (PepY-CMV) that induced chlorosis in pepper (Capsicum annuum) was shown to induce chlorosis in pepper in combination with another strain (Fny-CMV) that by itself induced a g...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1007/s11262-011-0608-6
更新日期:2011-08-01 00:00:00
abstract::The immunity of a combined DNA vaccine of HSV-2 glycoproteins B2 (gB2) and D2 (gD2) genes in comparison to individual vaccines was studied with regard to protecting against the HSV infection. Two recombinant DNA vaccines of the pHS2-gB2 or pHS2-gD2 were constructed and formulated. The neutralizing antibody titers appe...
journal_title:Virus genes
pub_type: 杂志文章
doi:10.1023/a:1020113902834
更新日期:2002-10-01 00:00:00