9-(5',6'-dideoxy-beta-D-ribo-hex-5'-ynofuranosyl)adenine, a novel irreversible inhibitor of S-adenosylhomocysteine hydrolase.

Abstract:

:The acetylenic analogue of adenosine 9-(5',6'-dideoxy-beta-D-ribo-hex-5'-ynofuranosyl)adenine has been synthesized, and its behavior as an inhibitor of bovine S-adenosylhomocysteine hydrolase has been examined. Incubation of the enzyme with excess inhibitor caused a time-dependent, irreversible inactivation of the enzyme that was accompanied by the reduction of two equivalents of NAD+ to NADH and the loss of the two remaining equivalents of NAD+. With use of radiolabeled inhibitor, it was established that 4 equiv of the acetylenic analog bind irreversibly to the enzyme and that 4 equiv were required to inactivate the enzyme completely. The inactivated enzyme could not be reactivated by incubation with NAD+. Denaturation studies revealed that 2 equiv of the inhibitor are bound more tightly to the enzyme than the remainder, suggesting the formation of a covalent linkage between the oxidized inhibitor and the enzyme. The putative covalent linkage was found to be acid sensitive but stable to mild base. The linkage could not be stabilized by treatment of the enzyme-inhibitor complex with either borohydride or cyanoborohydride. A Kl of 173 nM was measured for the inhibitor, making it one of the more potent inhibitors that have been reported. The enzyme used in these studies was isolated by modification of an affinity chromatography method reported by Narayanan and Borchardt [(1988) Biochim. Biophys. Acta 965, 22-28]. The affinity chromatography unexpectedly led to the isolation of two forms of the enzyme. The major form contained 4.0 mol of nucleotide cofactor/mol of enzyme tetramer, while the minor form carried only 2.0 mol/tetramer.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Parry RJ,Muscate A,Askonas LJ

doi

10.1021/bi00105a025

subject

Has Abstract

pub_date

1991-10-15 00:00:00

pages

9988-97

issue

41

eissn

0006-2960

issn

1520-4995

journal_volume

30

pub_type

杂志文章
  • Elucidation of the chemical nature of the steady-state intermediates in the mechanism of carboxypeptidase A.

    abstract::Cryospectrokinetic studies of zinc and cobalt carboxypeptidase A disclosed two intermediates in the hydrolysis of both peptides and depsipeptides and furnished all the rate and equilibrium constants for the reaction scheme E + S in equilibrium ES1 in equilibrium ES2---E + P [Auld, D. S., Galdes, A., Geoghegan, K. F., ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00351a020

    authors: Galdes A,Auld DS,Vallee BL

    更新日期:1986-02-11 00:00:00

  • T antigen origin-binding domain of simian virus 40: determinants of specific DNA binding.

    abstract::To better understand origin recognition and initiation of DNA replication, we have examined by NMR complexes formed between the origin-binding domain of SV40 T antigen (T-ag-obd), the initiator protein of the SV40 virus, and cognate and noncognate DNA oligomers. The results reveal two structural effects associated wit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi030228+

    authors: Bradshaw EM,Sanford DG,Luo X,Sudmeier JL,Gurard-Levin ZA,Bullock PA,Bachovchin WW

    更新日期:2004-06-08 00:00:00

  • Escherichia coli single-stranded DNA binding protein is mobile on DNA: 1H NMR study of its interaction with oligo- and polynucleotides.

    abstract::The interaction of the Escherichia coli single-stranded DNA binding protein (SSB) with oligo- and poly-nucleotides has been studied by 270-MHz 1H NMR spectroscopy and fast kinetic techniques. d(pT)8 and poly(dT) were used to study noncooperative and cooperative binding, respectively. The H6, H1', and CH3 resonances of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00320a036

    authors: Römer R,Schomburg U,Krauss G,Maass G

    更新日期:1984-12-04 00:00:00

  • Identification of lung major GTP-binding protein as Gi2 and its distribution in various rat tissues determined by immunoassay.

    abstract::Antisera were raised in rabbits against the 40-kDa alpha subunit of bovine lung GTP-binding protein, which were identified as the alpha subunit of Gi2 (Gi2 alpha) by the analysis of the partial amino acid sequence. Antibodies were purified with a Gi2 alpha-coupled Sepharose column and then were passed through a Gi1 al...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00437a035

    authors: Asano T,Morishita R,Semba R,Itoh H,Kaziro Y,Kato K

    更新日期:1989-05-30 00:00:00

  • 6-(Methoxymethylene)penicillanic acid: inactivator of RTEM beta-lactamase from Escherichia coli.

    abstract::The Z and E isomers of 6-(methoxymethylene)-penicillanic acid have been synthesized, and their interaction with the RTEM beta-lactamase has been studied. The Z isomer is an inhibitor and an inactivator of the enzyme, and there is some similarity between its behavior and that of other mechanism-based inactivators such ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00319a025

    authors: Brenner DG,Knowles JR

    更新日期:1984-11-20 00:00:00

  • Calcium-sensitive binding of heavy meromyosin to regulated actin requires light chain 2 and the head-tail junction.

    abstract::Sedimentation in a preparative ultracentrifuge was used to determine the affinity of heavy meromyosin, HMM, for regulated actin, F-actin plus troponin-tropomyosin, in the presence of MgATP at pH 7.0, 20 degrees C, and mu = 18 mM. HMM was prepared from vertebrate striated muscle myosin by a mild chymotryptic digestion....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00275a003

    authors: Wagner PD,Stone DB

    更新日期:1983-03-15 00:00:00

  • Kinetic Characterization of Prenyl-Flavin Synthase from Saccharomyces cerevisiae.

    abstract::We have characterized the kinetics and substrate requirements of prenyl-flavin synthase from yeast. This enzyme catalyzes the addition of an isopentenyl unit to reduced flavin mononucleotide (FMN) to form an additional six-membered ring that bridges N5 and C6 of the flavin nucleus, thereby converting the flavin from a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b01131

    authors: Arunrattanamook N,Marsh ENG

    更新日期:2018-02-06 00:00:00

  • Structural and functional characterization of the inhibition of urokinase by alpha 2-macroglobulin.

    abstract::We have investigated the interaction of alpha 2-macroglobulin (alpha 2M) with the serine proteinase urokinase, an activator of plasminogen. Urokinase formed sodium dodecyl sulfate stable complexes with purified alpha 2M and with alpha 2M in plasma. These complexes could be visualized after polyacrylamide gel electroph...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00336a014

    authors: Straight DL,Hassett MA,McKee PA

    更新日期:1985-07-16 00:00:00

  • Molecular characterization of the AP180 coated vesicle assembly protein.

    abstract::Recently, a new clathrin assembly protein (AP180) has been purified from coated vesicles of bovine brain (Ahle & Ungewickell, 1986). This protein has been shown to promote polymerization of clathrin into a homogeneous population of baskets under conditions where pure clathrin does not polymerize by itself. We have pur...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00416a040

    authors: Prasad K,Lippoldt RE

    更新日期:1988-08-09 00:00:00

  • Differential scanning calorimetry and CD spectrometry of acclimation temperature-associated types of carp light meromyosin.

    abstract::Differential scanning calorimetry and CD spectrometry were employed to study the thermal unfolding of light meromyosin (LMM) prepared from carp acclimated to different temperatures. The transition temperatures given by the major peaks at pH 8.0 in 0.6 M KCl for LMM from carp acclimated to 10 degrees C were 32.5 and 39...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9701181

    authors: Nakaya M,Kakinuma M,Watabe S,Ooi T

    更新日期:1997-07-29 00:00:00

  • Activity and crystal structure of Arabidopsis thaliana UDP-N-acetylglucosamine acyltransferase.

    abstract::The UDP-N-acetylglucosamine (UDP-GlcNAc) acyltransferase, encoded by lpxA, catalyzes the first step of lipid A biosynthesis in Gram-negative bacteria, the (R)-3-hydroxyacyl-ACP-dependent acylation of the 3-OH group of UDP-GlcNAc. Recently, we demonstrated that the Arabidopsis thaliana orthologs of six enzymes of the b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi3002242

    authors: Joo SH,Chung HS,Raetz CR,Garrett TA

    更新日期:2012-05-29 00:00:00

  • Circular dichroic and kinetic differentiation of DNA binding modes of distamycin.

    abstract::DNA binding modes of distamycin (DST) were investigated via comparative binding studies with oligomeric duplexes of the form d(GCG-X-GCG).d(CGC-Y-CGC), where Y is complementary to X and X = 4- or 5-base binding site. It was found that 1:1 and 2:1 drug-duplex complexes exhibit distinctly different circular dichroic (CD...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980950l

    authors: Chen FM,Sha F

    更新日期:1998-08-11 00:00:00

  • Ciliary dynein conformational changes as evidenced by the extrinsic fluorescent probe 8-anilino-1-naphthalenesulfonate.

    abstract::The binding of 8-anilino-1-naphthalenesulfonate (ANS) to ciliary dynein ATPase leads to a marked increase in the dye's fluorescence intensity, accompanied by a blue shift in the observed fluorescence emission maximum. We found that dynein has 37 +/- 3 ANS binding sites and that experimentally applied ANS concentration...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00347a012

    authors: Saucier AC,Mariotti S,Anderson SA,Purich DL

    更新日期:1985-12-17 00:00:00

  • Jeltraxin, a frog egg jelly glycoprotein, has calcium-dependent lectin properties and is related to human serum pentraxins CRP and SAP.

    abstract::The egg jelly that encapsulates amphibian eggs is essential for fertilization, but its molecular composition and roles remain largely unknown. We identified a calcium-dependent lectin from the pentraxin superfamily in the egg jelly coat from the South American burrowing frog, Lepidobatrachus laevis. This lectin, jeltr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035314o

    authors: Peavy TR,Hernandez C,Carroll EJ Jr

    更新日期:2003-11-11 00:00:00

  • Water-mediated substrate/product discrimination: the product complex of thymidylate synthase at 1.83 A.

    abstract::In an irreversible enzyme-catalyzed reaction, strong binding of the products would lead to substantial product inhibition. The X-ray crystal structure of the product complex of thymidylate synthase (1.83-A resolution, R factor = 0.183 for all data between 7.0 and 1.83 A) identifies a bound water molecule that serves t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00172a029

    authors: Fauman EB,Rutenber EE,Maley GF,Maley F,Stroud RM

    更新日期:1994-02-15 00:00:00

  • Selective photoinduced uncoupling of the response of adenylate cyclase to gonadotropins by 5-iodonaphthyl 1-azide.

    abstract::5-Iodonaphthyl 1-azide (INA) has been previously shown to selectively label, on photolysis, only those proteins in contact with the membrane lipids. Low concentrations (less than 10 microM) of INA added to rat ovarian plasma membranes induced, on photoactivation, a selective and complete loss of the response of the ad...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00298a016

    authors: Raviv Y,Bercovici T,Gitler C,Salomon Y

    更新日期:1984-01-31 00:00:00

  • Proton nuclear magnetic resonance investigation of cross-linked asymmetrically modified hemoglobins: influence of the salt bridges on tertiary and quaternary structures of hemoglobin.

    abstract::Asymmetrically modified hemoglobins, [alpha(des-Arg)beta]A[alpha beta]cXL, [alpha(des-Arg-Tyr)beta]A[alpha beta]cXL, [alpha(des-Arg)beta(NES)]A[alpha beta]cXL, and [alpha(des-Arg)beta]A[alpha beta(NES)]cXL, have been prepared from chemically modified human normal adult hemoglobin (Hb A) and mutant hemoglobin C (beta 6...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00306a027

    authors: Miura S,Ho C

    更新日期:1984-05-22 00:00:00

  • A heuristic approach to the analysis of enzymic catalysis: reaction of delta-(L-alpha-aminoadipoyl)-L-cysteinyl-D-alpha-aminobutyrate and delta-(L-alpha-aminoadipoyl)-L-cysteinyl-D-allylglycine catalyzed by isopenicillin N synthase isozymes.

    abstract::Isopenicillin N synthase (IPNS) catalyzes the oxidative cyclization of delta-(L-alpha-aminoadipoyl)-L-cysteinyl-D-valine to isopenicillin N. It is proposed that the multiple products produced from certain substrate analogues result from pathway branching after formation of a ferryl oxene intermediate. We have been int...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00022a031

    authors: Blackburn JM,Sutherland JD,Baldwin JE

    更新日期:1995-06-06 00:00:00

  • Structural studies of acetylated and control inner core histones.

    abstract::The role of acetylation on the conformation and association state of the inner core histone octamer isolated from HeLa cells was examined. Preparation of suitable quantities of pure acetylated and control inner core histones from HeLa cells required the development of a new preparative procedure. The results from size...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00384a041

    authors: Prevelige PE Jr,Fasman GD

    更新日期:1987-05-19 00:00:00

  • Crystal structures of nitroalkane oxidase: insights into the reaction mechanism from a covalent complex of the flavoenzyme trapped during turnover.

    abstract::Nitroalkane oxidase (NAO) from Fusarium oxysporum catalyzes the oxidation of neutral nitroalkanes to the corresponding aldehydes or ketones with the production of H(2)O(2) and nitrite. The flavoenzyme is a new member of the acyl-CoA dehydrogenase (ACAD) family, but it does not react with acyl-CoA substrates. We presen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051966w

    authors: Nagpal A,Valley MP,Fitzpatrick PF,Orville AM

    更新日期:2006-01-31 00:00:00

  • Structure and dynamics of an acid-denatured protein G mutant.

    abstract::NMR studies of protein denatured states provide insights into potential initiation sites for folding that may be too transient to be observed kinetically. We have characterized the structure and dynamics of the acid-denatured state of protein G by using a F30H mutant of G(B1) which is on the margin of stability. At 5 ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9920230

    authors: Sari N,Alexander P,Bryan PN,Orban J

    更新日期:2000-02-08 00:00:00

  • Purified native subunits of bacterial luciferase are active in the bioluminescence reaction but fail to assemble into the alpha beta structure.

    abstract::We have expressed the alpha and beta subunits of bacterial luciferase, encoded by luxA and luxB, from separate plasmids in Escherichia coli and developed an efficient purification scheme that yields many milligrams of protein of greater than 90% homogeneity. Earlier experiments showed that subunits synthesized separat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00070a010

    authors: Sinclair JF,Waddle JJ,Waddill EF,Baldwin TO

    更新日期:1993-05-18 00:00:00

  • Electrophoretic mobilities and diffusion coefficients of hemoglobin at high pH.

    abstract::Diffusion studies by photon correlation of scattered laser light confirm the dissociation of the tetrameric form of human carboxyhemoglobin to dimers above pH 10 and provide new estimates of the subunit dissociation equilibrium constants in this pH range. Electrophoretic light-scattering experiments under the same con...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00616a014

    authors: Haas DD,Ware BR

    更新日期:1978-11-14 00:00:00

  • Inactivation of steroid sulfatase by an active site-directed inhibitor, estrone-3-O-sulfamate.

    abstract::Steroid sulfatases are responsible for the hydrolysis of 3beta-hydroxy steroid sulfates, such as cholesterol and pregnenolone sulfate, and have an important role in regulating the synthesis of estrogenic steroids, from estrone sulfate and dehydroepiandrosterone sulfate, in endocrine-dependent tumors. Although little i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00036a025

    authors: Purohit A,Williams GJ,Howarth NM,Potter BV,Reed MJ

    更新日期:1995-09-12 00:00:00

  • Thermodynamic studies of the core histones: stability of the octamer subunits is not altered by removal of their terminal domains.

    abstract::We have investigated the role of the labile terminal domains of the core histones on the stability of the subunits of the protein core of the nucleosome by studying the thermodynamic behavior of the products of limited trypsin digestion of these subunits. The thermal stabilities of the truncated H2A-H2B dimer and the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0110140

    authors: Karantza V,Freire E,Moudrianakis EN

    更新日期:2001-10-30 00:00:00

  • Modifying the substrate specificity of staphylococcal lipases.

    abstract::The lipase from Staphylococcus hyicus (SHL) displays a high phospholipase activity whereas the homologous S. aureus lipase (SAL) is not active or hardly active on phospholipid substrates. Previously, it has been shown that elements within the region comprising residues 254-358 are essential for the recognition of phos...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990096d

    authors: van Kampen MD,Verheij HM,Egmond MR

    更新日期:1999-07-20 00:00:00

  • A ParE-ParC fusion protein is a functional topoisomerase.

    abstract::Type II topoisomerases are responsible for DNA unlinking during DNA replication and chromosome segregation. Although eukaryotic enzymes are homodimers and prokaryotic enzymes are heterotetramers, both prokaryotic and eukaryotic type II topoisomerases belong to a single protein family. The amino- and carboxyl-terminal ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0155201

    authors: Lavasani LS,Hiasa H

    更新日期:2001-07-24 00:00:00

  • Regulation of phosphatidate phosphatase activity from the yeast Saccharomyces cerevisiae by phospholipids.

    abstract::Regulation of Saccharomyces cerevisiae membrane-associated phosphatidate phosphatase (3-sn-phosphatidate phosphohydrolase, EC 3.1.3.4) activity by phospholipids was examined using purified enzyme and Triton X-100/phospholipid-mixed micelles. Anionic phospholipids activated phosphatidate phosphatase activity whereas zw...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952808f

    authors: Wu WI,Carman GM

    更新日期:1996-03-26 00:00:00

  • Heme speciation in alkaline ferric FixL and possible tyrosine involvement in the signal transduction pathway for regulation of nitrogen fixation.

    abstract::The pH-dependent behavior of the ferric forms of two soluble truncations of Rhizobium meliloti FixL, FixL (heme and kinase domains, functional), and FixLN (heme domain) are examined by UV-visible, resonance Raman, and electron paramagnetic resonance spectroscopy. Global analysis of UV-visible data indicates that the p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981439v

    authors: Lukat-Rodgers GS,Rexine JL,Rodgers KR

    更新日期:1998-09-29 00:00:00

  • Investigation of the mechanism of iron release from the C-lobe of human serum transferrin: mutational analysis of the role of a pH sensitive triad.

    abstract::The transferrins (TFs) are a family of proteins that are widely distributed in vertebrates, where they serve a major role in iron binding and transport. Most TFs are composed of two homologous lobes, the N- and C-lobes, each able to bind a single iron atom. Human serum transferrin (hTF) binds iron in the blood and del...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi027071q

    authors: Halbrooks PJ,He QY,Briggs SK,Everse SJ,Smith VC,MacGillivray RT,Mason AB

    更新日期:2003-04-08 00:00:00